Gene detail

Detailed information of LLU|FUN_006985-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_006985-T1	IRE1-RELATED	scaffold_1419	23784	53199	+

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_006985-T1

ATGAGTGGTGTCCCACTGTCGAACGACGAAGAAAACTTTTGGCATCTGGTACGTGTACTGCATCATGATGTGCCGAACAGGCTTCGTGAGTTATTTAAACAGAAATTTCATCAACGATTTAACTTAGCATGGGGCGACAACCAGGCGTCCGGACAATTTTTCGTCGCAAACCTCTGTAACACGAGACGCATAGGTCAACATATCATCGACATTATTAGACAGGGTGACACAGCTCTCTTCGACAGCACAACTCTGTTTACGTGTCTGCTGTACACTAGGATTTTGCACCCGAAGCTTAGATATGGCACGAGGACCCCACCTATTCAAGATAATGAACGTGTCGATGAACTGCGGGAGATGCGAAATGAGTTGGCCCATTCCACTTCAGCATCTTTGCCGCGCGCGACCTTCTACCAGAAATTGGCGTTATTAAATATCATCTATGCGCAACTGCACTGGGACCCCACGTTGATGAGACAGTTGGCAGGAGACCCCATTGTCACTGCGGAGTGCGTCCACCTCAAACAACAACTTGATGCCGAGAGGCAGCGATACAATGGGCTTGAAGTGATGGTGCAGGCGCTTGATGGGACGGTGCAGGCGCTTGACGGGACGGTGCAGGCGCTTGACGGGACGGTGCAGGCGCTTGACGGGATGGTGCAGGCGACTGATGTGATGGTGCAGACACTTGACGGGACAGTGCAAGCGATAGATGGGATGGTGCAGGACAATGAACAGAGGCTGAATAGCACAGCAGATGGACTAACTCGCTCCAGACGCCGAAGCTCTGACCTGGATTATACTGATGACTTCGCTCCGTTCGCTGACACGATACAAGAAACAGAATTTTACTTCATCAAGGGGAAATACGGCGAAGATCTCGCTCGGCCGAAACACGAGTTACAGAAATGGAGGTCAAATCTGAAAGTGGCACAAAAGAGAATGATTGAACGCCATGTAAAGAAGAAGAATGAAGAAGAAGAAAACACCAGTTTCCGGAGTCTATCAGACATTTTCTTTAACTTGCGGATGCACTCTAATAGGGAAACGTACAAACAGCTAGAACTGAGGACACATCACGACATCCTGCAGTGGGAGAAGGAAATAGATTCATGTCATCCAATCAGCGTACGTGGTCTGTTTGAAGCAGATAAGCCAGGTATGATGGCACCAGTCAGGATCTTAGTACTTGGAAAGGCTGGCTGTGGCAAAAGCCTGCTGAGTATGCACATTGTAGACCAGTGGTTGGATAATGCATTGTTGCCAGACGACATTCATCATGTATTCCTTTTTAATCTAAGGGATCTGTCAGGCATCAAGACATGCTCACTGGAAGATCTCTTCTTCAGGTACCAGGATTGTGTGATGCCAAGTCCTGAAGCCATCAGTGAATTCTTCCAGCAAATGGTTGCTGAACCACAGGAAACCCTCATAATTTTTGATGAATTCAACGCAGCTACAATGTTGCCATTCGAAAGAGAAGCATTTGCATACAGTAGACAAGTTGAAATGCCCAGGTTGATAGCATCTATCATTAATGGATTCACCATTCCATCCACCAGAGTCCTGGTGATGTCCCGACCAGGTGGCATCACCATTGATGTCTATGATACGAAAGCCGAAATATACGGGTTTACTCAAGAGAGGATGTCTGACTACATCAAGAAATTTAGTGGTGGAAATCATACACTGCAGAAATCAATAGAAGAGTACATTGACCAAAATGTAAATGTGTGCAGCATTTGCTATGTTCCGGTACATTTGAATATGGTTTGTCGCATTGTGAAACAACGCATGCAACATGAACCTAATCCACGATTACCAGAGACACACACAGAGATGCTTGTCAGTTATGTCACTAACTTTCTTGTCAATCAACATCCGCACTTCAAAGATCACAAAGTAGACAAAACGATGGATGTGATTGCGGAATTGAAGGGCTCTGTTCTTAGTCATGCCAGGATGGCCCAGTATGGAATGAAACAAGTTCCTATTCAGGTCACATATTCAACGAAAGAAATCCACGACTTTCAGTTGGACCATGTTGCTATGCAATGTGGTCTTTTGTTGGAATCGAGACATCCAGGCACTGTCATGTTCACACCAGCTGTTACGTCAGCGTACTACTTCCAAAGCCTTGTAGTACAGGAGTTTCTGGCTGCAGTAGCATTAGTAACCAACATCAAACAAGTGCGGCGTATGATGGCCACAGCCTCTGCCAGACAACTTGGCCGTGTTCTCATGTTCATAGCTGGTTTGCTGGGTAACAGTAAGAATCACCCATTCCTCTGTTCATTGCAAAATAGTCAGAGGAAATTATTTCAACGGTCAATCCAGCAGAACAGAGCTGAATCCTTAGTAAAGCTCATGAAGTTAGTTGTTGCACGAGAACGGACCAAGGAGGCTAGAACAGGAGACAAATCTGCAGTTCACATGGCTGGCACAATGCTGCTAATGATGATGATACAAGAATCTCGCCAGCGTGAACTCTGGCGCCATGCGTCAGACTACGTTTTGCAAGGTGGCAAGGAACTGAATCTAAAAGATTATCACGTCAGCCCTGCGGAACTGCATGCGTTGGTTTACGTACTACCAGAAACTAGTATAACATCACTGAAGCTCAATGGCAACCCTGACCTCCACGGCCCAGCGGTGATGACGGCCCTCAGTGACAGCCTGGTCCAATTGATCAGGCTGGAGGAACTGTGTATGGGCCAATGTGAACTGGATGACAATGACATAGTTCTACTGGCCTCATCTCTACCTTCACTGATGCGTCTGAGGACTCTAATGTTAGACCATAACTCTATCGGTGACATTGGCGCCCTCCGTTTGTCAGATGTGGCTGTCACACTGCCTCGCCTTGAGAAACTCGGGCTCCACTTCAACCTGTTGACAGAGGCGGGAATGAAGGGCGTGAGGCAGGCGGCACATGCCAAACCCTGGCTGCAGTTACTGATGTTGGACATCCAGCGACCACCAGGGCAGGTGCTGTACCACCCTGACCTTGTCATGCACTATCAACACCTAGATGACACGGGACAATCTGCTTTGAGTCGGCTACACAGGTGTCCCTTGGACATGTGGTGGAGCCAGAGAGATAGTGGAAGAGAGAGAGTAAGAGGGGGAGAGATGAAGAGAAGCAGAAAGAGAGGGAAGGAGGAAAGGAGTCTGCCCCGTTCACTAGTGACTCTTTCCACTCCAACAGGTGCGAGGAGAACCATTGCATCGACTGTTGTGGGCATCCGTAGATGGTCAATTTCTCCAGTAGTACAGGCTGTTCAACAACCACATGACTGCATCAAGCAGGAACTACACCAACAACAGTTGCAAAAGTGGCAGAGCAAACAAGGTGAAGACATCTTGCAGCAGCAGCAGCAGCAGTTGCAAAAATGGCAGAGCAAACAAGGTGAAGACATCGTGCAGCAGCAACAGTTGCAAAAGCGACAGAACAAACAAAGTGAAGGCATCTTGCAGCAGCATCAGTTGCAAAAGTGGCAAAGCAAACGAGGTGAATATGTCTTGGAGCAGCAACAGTTGCCAAAGCAGCAGAGCAAACAAAGTGAAGACATCTTGCAGCAGCAGCAACAGTTGCAAAAGTGGCAGAGCAATCAAGGTGAAGACATCTTGCAGCAGCAGCAGTTGCAAAAGCGGCAGAGCAAACAAAGTGAAGACATCTTGCAGCAGCAGTTGCAAAAATGGCAGAGCACACAAGGTGAAGACATCTTGCAGCAGCAACAGTTGCAAAAGCGACAGAGCAAACAAAGTGAAGGCATCTTGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAAAAGCGGCAGAGCAAACAAGGTGAAGATATCTTGCAGCAGCAGCAGTTGCAAAAGCGGCAAAGCAAACAAAGTGAAGACATCTTGCAGCAGCAGCAGTTGCAAAAATGGCAGAGCAAACAAGGTGAAGACATCTTGCAGCAGCAACAGTTGCAAAAGCGACAGAGCAAACAAAGTGAAGGCATCTTGCAGCAGCAACAGTTGCAAAAGTGGCAGAGCAAAAGAGGTGAATACGTCTTGGAGCAGCAACAGTTGCAAAAGTGGCAGAGCAAACAAGGTGAAGACATCTTGCAGCAGCAACAGTTTAAAAAGTGGCAGAGCAAACAAGGTGAAGACATCTTGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAAAAGCGGCAGAGCAAACACGGTGAAGACATCTTGCAGCAGCAGCAGCAGTTGCAAAAGCGGCAGAGCAAACACGGTGAAGACATCTTGCAGCAACAGCAGTTGCAAAAGCGGCAGAGCAAACATGGTGAAGACATCTTGCAGCAGCAGCAGTTGCAAAAGCGGCAGAGCAAACAAAGTGAAGACATCTTGCAGCAGCAGCAGCAGCAGTTGCAAACGCGGCAGAGCAAACAAGGTGAAGACATCTTGCAGCAGCAGCAGCAGCAGTTGCAAAAATGGCAGAGCAAACAAGGTGAAGACATTGTGCAGCTGCAACAGTTGCGACAGAGCAAACAAAGTGAAGGCATCTTGCAGCAGCAACAGCTGCAAAAGTGGCAGAGCAAACAAAGCGAAAGCATCTTGCAGCAGCAACAGTTGCAAAAGTGGCAGAGCAAACAAAGCGAAAGCATCTTGCAGCAGCAACAGTTGCAAAAGCAGCAGCAGCACAAACAAAGTGAAGACATATTGCAGCAGGAGCTGCAAAAACAACAGAGCAAAGGAGATGAAGACATTTTGCAACAGCATCATCATCATCAGCAGCACCAGATGGAGCAGCACCAGCAGCAGCTACAGCAGCTGCAAAAGGTGCAGAAAAAACAAGGTGAAGACATCTTGCATATGCAGCAAGTCAAAGCAGGCAACGTGGCTGGACGTAATAGGACATCATGCAAATGGGCAAAATTCCCCCAACTGAATGAAGACCACACTGCAAAGCTAACAAAACTAGATGAACTGCAGCAGCAGCAGCCACATAAATTGGTACAGGACCTTCACCAGATCTGCATGCGGGACGACACACAAGTGTACGTCGGTCTCATCAGAGATGGGCGAGCGGTAGCCGTGAAGAGAGTGAGGAAGTCATTCTACGAGCGGGTAGAACGGGAAGTGGACACTCTATTAGAACTGCGTCATCATCCCAACATTGTGCAGTACATGATGGTAGAAAAAGACAACGACATGGACACCTACATTGCTTTGGAGTTGTGCGATTTCAATGTCGAACAATGGCTCCTGCAGAAATTGGTGAAAGAAATGGATGAGAAAGACTGGCGCAGAAAGGCTGCTGGTTTGGTCCGAGGCTTGTTAAGTGGACTTGACTACATGCATACTTTAGAACCCCGCCATATTGTGCACAGAGATTTAAAGCCACAAAATGTGTTTGTGATTTCTTCCAATGGAGAGGAGTGCATCAAGATTGCAGACTTTGATCTCAGTCGTCCCCTTCAGCCAGATAGGAGTGCATTTGAGACAACTGGTACAGGGACAGCATTCTGGATGCCAAAAGAGGTGCTTCAATCGATGTATGAGCAACAGACCAACCAAAAGACACCCTTCCAATGCAAAGCCAGTGGTGACATACAGTCGGCTGGTATGGTGTGTTTTTACATCATGTCTCGGGGTATTCATCCCTATGCACAAGATGGCAAATTTGTACACGCACATGCCAGGATTATGGATGGAAGCTATGAATTGTCAGCTGTTGAAGACCCAGTGGCTTGTGACCTAGTCGAGCACATGCTGGCAGATAAACCAATCGAACGATCATCAGCAGGACAGCTGCTAAGCCATCCGTACCTGAAGCAAGTAGAATCTGTGTTCAAATCTGAATATGAGAAGTTGCAATGCTTGGGTAAAGGAAAACTGGGGAAGGTGTTTAAGGCACACCACAAGGATGGTCAATACTATGCTATCAAACGCATCCACCTCAACAAAAGTGATGAAGCGAAACAGAACGCTGAGCATGAGGTAACAACACTAGCAGCACTATCAGATCACACAGGCATTGTACGCTACCACCATTCATGGACTGAGAGTCCACCGCTAATTTGGCTGAAGCAGTTTGACAGCCTCATCCCTTATGTGGATGACAGCAAAACAACCGGTGATGAGACGGAATCATTTGATGAGCAAGAAGGGAGACGTCATGATTGGCTTGATCCAGGTCAATTGCTCTATGTGAAAATGGAGCTCTGTCAGCAAACTCTCAAAGCCTGGCTCAAAGAAAACATGGATCATGACCAGAAACAAGTGCGGAAGATCTTCCATCAGATAATTGGTGCTGTTCACGATGTACATGAGCATGGTCTCAAGCACAGATACATCAAGGTATGTTTGTTATGTTAA

Transcript

LLU|FUN_006985-T1

Protein

LLU|FUN_006985-T1

MSGVPLSNDEENFWHLVRVLHHDVPNRLRELFKQKFHQRFNLAWGDNQASGQFFVANLCNTRRIGQHIIDIIRQGDTALFDSTTLFTCLLYTRILHPKLRYGTRTPPIQDNERVDELREMRNELAHSTSASLPRATFYQKLALLNIIYAQLHWDPTLMRQLAGDPIVTAECVHLKQQLDAERQRYNGLEVMVQALDGTVQALDGTVQALDGTVQALDGMVQATDVMVQTLDGTVQAIDGMVQDNEQRLNSTADGLTRSRRRSSDLDYTDDFAPFADTIQETEFYFIKGKYGEDLARPKHELQKWRSNLKVAQKRMIERHVKKKNEEEENTSFRSLSDIFFNLRMHSNRETYKQLELRTHHDILQWEKEIDSCHPISVRGLFEADKPGMMAPVRILVLGKAGCGKSLLSMHIVDQWLDNALLPDDIHHVFLFNLRDLSGIKTCSLEDLFFRYQDCVMPSPEAISEFFQQMVAEPQETLIIFDEFNAATMLPFEREAFAYSRQVEMPRLIASIINGFTIPSTRVLVMSRPGGITIDVYDTKAEIYGFTQERMSDYIKKFSGGNHTLQKSIEEYIDQNVNVCSICYVPVHLNMVCRIVKQRMQHEPNPRLPETHTEMLVSYVTNFLVNQHPHFKDHKVDKTMDVIAELKGSVLSHARMAQYGMKQVPIQVTYSTKEIHDFQLDHVAMQCGLLLESRHPGTVMFTPAVTSAYYFQSLVVQEFLAAVALVTNIKQVRRMMATASARQLGRVLMFIAGLLGNSKNHPFLCSLQNSQRKLFQRSIQQNRAESLVKLMKLVVARERTKEARTGDKSAVHMAGTMLLMMMIQESRQRELWRHASDYVLQGGKELNLKDYHVSPAELHALVYVLPETSITSLKLNGNPDLHGPAVMTALSDSLVQLIRLEELCMGQCELDDNDIVLLASSLPSLMRLRTLMLDHNSIGDIGALRLSDVAVTLPRLEKLGLHFNLLTEAGMKGVRQAAHAKPWLQLLMLDIQRPPGQVLYHPDLVMHYQHLDDTGQSALSRLHRCPLDMWWSQRDSGRERVRGGEMKRSRKRGKEERSLPRSLVTLSTPTGARRTIASTVVGIRRWSISPVVQAVQQPHDCIKQELHQQQLQKWQSKQGEDILQQQQQQLQKWQSKQGEDIVQQQQLQKRQNKQSEGILQQHQLQKWQSKRGEYVLEQQQLPKQQSKQSEDILQQQQQLQKWQSNQGEDILQQQQLQKRQSKQSEDILQQQLQKWQSTQGEDILQQQQLQKRQSKQSEGILQQQQQQQQLQKRQSKQGEDILQQQQLQKRQSKQSEDILQQQQLQKWQSKQGEDILQQQQLQKRQSKQSEGILQQQQLQKWQSKRGEYVLEQQQLQKWQSKQGEDILQQQQFKKWQSKQGEDILQQQQQQQQLQKRQSKHGEDILQQQQQLQKRQSKHGEDILQQQQLQKRQSKHGEDILQQQQLQKRQSKQSEDILQQQQQQLQTRQSKQGEDILQQQQQQLQKWQSKQGEDIVQLQQLRQSKQSEGILQQQQLQKWQSKQSESILQQQQLQKWQSKQSESILQQQQLQKQQQHKQSEDILQQELQKQQSKGDEDILQQHHHHQQHQMEQHQQQLQQLQKVQKKQGEDILHMQQVKAGNVAGRNRTSCKWAKFPQLNEDHTAKLTKLDELQQQQPHKLVQDLHQICMRDDTQVYVGLIRDGRAVAVKRVRKSFYERVEREVDTLLELRHHPNIVQYMMVEKDNDMDTYIALELCDFNVEQWLLQKLVKEMDEKDWRRKAAGLVRGLLSGLDYMHTLEPRHIVHRDLKPQNVFVISSNGEECIKIADFDLSRPLQPDRSAFETTGTGTAFWMPKEVLQSMYEQQTNQKTPFQCKASGDIQSAGMVCFYIMSRGIHPYAQDGKFVHAHARIMDGSYELSAVEDPVACDLVEHMLADKPIERSSAGQLLSHPYLKQVESVFKSEYEKLQCLGKGKLGKVFKAHHKDGQYYAIKRIHLNKSDEAKQNAEHEVTTLAALSDHTGIVRYHHSWTESPPLIWLKQFDSLIPYVDDSKTTGDETESFDEQEGRRHDWLDPGQLLYVKMELCQQTLKAWLKENMDHDQKQVRKIFHQIIGAVHDVHEHGLKHRYIKVCLLC

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR045133	Family	Serine/threonine-protein kinase/endoribonuclease IRE1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13954	IRE1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0036498	Biological Process	IRE1-mediated unfolded protein response	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0070059	Biological Process	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	Interproscan
GO:1990604	Cellular Component	IRE1-TRAF2-ASK1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-