Gene detail

Detailed information of LLU|FUN_003819-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_003819-T1	DENN DOMAIN-CONTAINING PROTEIN 4	scaffold_12	182587	204129	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_003819-T1

ATGGCAGTCCCACTGAACAACGGATTGGCGGAACTGCTGGTGGTGGTGGGAATGGACAAGTACACAGGCCTTGTGGTCTCCGAGCAACAGCCAAGTTCCGCTGAAGACAATGAAGAACTGACAAGCACCACGTTCAAGCCACAGATTCTTGCAGCAATCTCCTCCCAGGTAGCGCTGTTTCCACAAATGACGCCGTGGAAGGACGACCACTATCCACCATTTGGTAAAACAAAGTTGTCCCACAAAAGCATGTTGCGTCCAACAAAACCAACTGTCCGACGACGCTCCTCCCAACTCTCTCGCAAGGACAAGCCAAGCGAGTCACACAGTGATGGGAAGGAAAGTGGGAAGGCAAGATCATATCACCCCCTAGATCCTCGGAGATTGAAACAAACAATGCTGTCGAGAAAGTGGACGTTTAGTTCTGCTGATCTAATCCAGACGGAGCCGGAGCAGAGCCCTGTGTGTTACTCCGAGCTTCCTGTTGGCCGTGACATGCTCCACTCTCTCAGCAACCTCTGTTTCCCCGATGGCGCCCGTGTCTGCAGTAATCGGCCGGATGAGAGAGTCCACTTCTTGGTACTGACCGATGTAATGGGCAACTGGACATATGCCACCTGCCTCACATCGTCCACTCCACACTTCATAGAACTGACGGAGCCAGGCCATTGGAAGTGTGTGCCACGTTTTGCCACAAGTGATAGCAATAAGGGAAAGGATGTATATTACCTGCCTACATGCTACGTGGTCATCTCCAAATATCCCTACTTCACCGTTCTCAAGGACTGTCTCTCAAGACTAGTTCATCAGTTGCACCAAGACAATGCTGACCAGGTGCCACACCTACAGCTGTTTGCTCTTCAATTGACGATGATGCCAGTTCCACCTCCCGGCAAACTCAGCGTTGAGTTCTCCCTTCTTGATGTCACATTTCGACTTCACCCGACAGACGCTCCTGGCCGGCCAGTCATCGACATCAGCCTCAATCTGATCTTGCAGTGCTTCTCCATTGAGTCCGTGTCGTTCCTCGTGGCGTGTGTCCTCACTCAGCAGAAGATGGTCATTCTGTCTCGAAGTTGGGCTCTTCTGACAGTCATATCTCAGACGCTGCTCTATATGGTATCACCTGCCCGGTGGAACAACATCTACGTGCCCATTCTGCCCGATGTCATCTTGGAACTTCTCGAAGCCCCAGGAATCTACATCATTGGCTGTCATTCTCGCCACAAGGATCATGTTCTGGAGCTGGATGGCGTGGTGGTAGCGGACTGTGACTCTGGAGAAATCTGTGTGTGTGAGAAGCTGGCTGTCCACCCCCTTCCTGAGAGACATGCTACGGGCTTCCGTGACTCATGCAAGAAACTACAGCATCAGTTTGAGCTGGTCACTTTACACAGTGTTACTCCATTCACTTACGAGGAGGCGAAGTTGGCAGAGAGGAGGCGCCGTGAGTCATTCAACCACGGATTCCTTCTGGCTAGTCTCGAACTCATGGTCAATCTATTCAGTGGCATCCTACCCCATCTGAAGCCAGCCAGACGCTTCTTCAACAGAGACCAGTTCTTGGACAGTCTGCCTGACGTTGACAGGCCTTTCTACGAGCAGGTGCTGGCTACGGATCTGTTCAGTAACTTCCTGAAAGAGCGGCTGGCCGGCAAGCAGGACTGCTGGTCTATGTTGGAGGAGCGACTCCGCCCTCACAGCCACTACCTCAGTAACAAGGACCTCACCACAGATCTGTCAAAAGGTCCAGTGATGAAGAGAAATGTGTCAATCCTGTCAATACCGATGTTGGCGAAGGAACCGTCCAGGGAAGTGACTGTTCAACTTCCAAAGTTTGTCTATGGTCTTGGACATCATTTCTTCGAGCATTGTATTGACGAATTTACTCGCCATATCAAGATGTGTCAGTCTTCAAGCACACACGCCTCTCTTCTCTACCTCCGCGGCATGGCTCTCTCTGCTACTGGCAAGACAATGAAAGCCATCGAGGAATTCCATAGTCTGGGAGCATGCGACAAGCGACTCTTCCCTAACCAACATGTTGTCCAATTAGTATCAAAGATGACCACTCACGAAAAGGACATGATGCGGTCATCAGAGTTCTACCGGCGGTCAGAGGCATGGCTGGACACTTTCGAAGCACAATCACATGACCAGCCCGTCGTGCTGCAATTGGACAAGCTTCAGCATGAAAATATTGATTTGGTCAACTTCACCGACCTGATGCAGTTCCTGGAGATTGTCAATGATGTTGACGTCATCCAGAGACTGTTCCAAGTGTTAACACGTGGAACAGGTCAAGCTCTGCACCCAGCAACGTTTGATGACTTCCTGCGGAGCTGGAAGACTGTGGAGCTGGCCACACAGGACGCTGTCTCCAGCAGTAGCTTTCTGTCTCTGGAGGGGGACGAGTCTCTCCTGAAACTCTCTCAGCCGGTCAAGTGTGACCTCGGCTTTGGCTGCATTGGAATCACTCAGAAGAGGCTGATTTTCTTGAGTGAGAAGTCGCGAAAGTACCAGGAGATCATTGAGCTCCAGGACATTGCCTATCTGGAGAAGATTCAACAGAAACAGTTCCTGTATCGCTTTGAGGCTCTTCGAATCTGGAACAAAGACAAGAGATTGAAGCCGTTTGTGGCATGCCTGAAGGAGTCACGTGACACCATGTATCTGCTCATCACCGAAATGTGGTCTGGCTTCCACCTCGCCGAAGTTCTGTGTGAACCAATAATAATTCACCAGGTATCGCTGAATGTGCTCTTAATCGACGCAGTGCTTAAGTGCTGGCAGGGAGACTTCATCTTCCATGACTGCCCTGACGAGTGTGCCCTTGCTCCTCTTTGTCAGTTCACGCAGAAGAAGAAAGAAGGAAATTATCATCTACCTCCACTGACAAAAGAGTTCCTTCTGCACCGACTTGACCCCAACTATGGGTTGCCACAAAGGGTAGCAGTGGAAACCCTGTTGTACATTCCTGCCAAATGCAGCAGCGAGGTGGAGGAGGAGTGGGGTGCCATGTTGTGGTGTGGGCTCGGAGATGGACGGGTGCGAGTGTTCAGTCTGGACTCCTTCGGTGTGGACGAGGTCTATGTGCGAGCAAAAGACAGGGTGGTGTGTCTACTGTTGGTGGGAGAAACGCAGGTGTGGGCTGGTTCCTTCGACACCTGTATCTATGTCATTGACATTGACACTCGCACCTGTAATCAGGCTCTGGTCCAGCACACTGACATGGTCAGTGACCTGACCCAGTCAGAAGACCTCAGGGTGTTTTCTTCAAGCGTCAATGGACAGATCATCGAATGGAACGCAAAGACACTGCAGTGCAAACAGCAGCTGGCGCTCCCTGGTGTTGACTCACTGAAGTATATCCGTGTCTGGCGGGACCAGCTGTGGTGTGGAACAAGACATGAACTGGTTGTCATGACTACAGCAGGCGTTCTAGTTCGTCGGCTAGATAACCTCATTCAGAGTCCAGGCAGTTTTGACATTATCGATGATAAGCTATGGCTCGGCTGTGCGAATGAGGGAGAAATCATTATTTTGAATGTCGTCACCATGATGGTTCTGGAGACGTTGACATTGACCTGTCGTGGAGTGAGCAAGGTCGTTGTATCACATGACAAGGTGTGGGTTGGATCGAAGGACGGAGTGTTGTATTTGTATGACGCTGAGAGCCATGGACTACAGCGCAAATTGAAGACTCATGCTGACTCTCTTCGATCACTCTGCACAGTCGACATTCAGTGTATTGTCACTGGAGCAGGCAGCCTTGATGGCAAGGTCGCTCTCTGGACGGTGTAA

Transcript

LLU|FUN_003819-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03455	dDENN	dDENN domain	Domain	Interproscan
PF03456	uDENN	uDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001194	Domain	cDENN domain	Interproscan
IPR005112	Domain	dDENN domain	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-