Gene detail

Detailed information of LLU|FUN_000706-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_000706-T1	PHD/F-BOX CONTAINING PROTEIN	scaffold_1021	149267	174102	+

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_000706-T1

ATGGCAGCAAATAGGAAAATTGGAACCCGATTTCAGCGGAAGCAAGAGAGGAAGGTGTACGCAGATGAAGACATTGATGATGATGAGATCGAGGGCAAGAGGTTGTTCAGCGTGGAAGAGAAACTTGCCAGTAACAAGTACCATCACAAGTTTGCTAAGCAACTCAAGGGACACGAGGTGAACCTGAAATGGGTTCAAGAGAATGGGTTTTCCTGTCCCTTGCTTGTCCTTGACAAGACTGGACTAGGCATGAGGGTGCCAAGTCAAAACTTCACAGTAAATGACGTCAAACAATGTGTCGGGTCACGACGGATCCTCGACATAGTCGACGCAATGACACAGAAGGGAATCAACATGACAATGAAGGAATGGGCGCACTACTTTGAGAATCCTGACAGTCGTGACCGTACTCTCAATGTTATCAGTCTTGAGTTCAGTCACACAAAGCTGCAGAATTATGTTGAACAACCCACTATTGCCCGACAGATGGACTGGGTGGACACCGTCTGGCCACGCCACCTCAAGGAATGCCAGACAGAAACCACTAACATCATTGACAAGATGAAGTATCCAAAAGTTCAAAAGTATGCTCTGATGAGTGTTGCGGGCTGCTACACCGACTTCCACATAGACATGGGAGGCACCTCCGTATGGTACCATATCCTTCATGGCCAGAAGGTATTCTGGATGATTCCGCCGACAGAGGAGAACCTGGAACTGTATGAGCAGTGGACACTGTCAGGGAAACAGGGCGATGTCTTCTTTGGCGATAAGGTCAAGAAGTGTCAGAAGATCACACTGGAAGCTGGCTACACATTCTTTATACCACCCGGCTGGATCCACGCTGTGTTCACACCGAAGGACTCGCTCGTCTTCGGGGGCAACTTCATCCACAGCTTCAATGTCCCCAAGCAGTTGCGCATGTACGAAGTGGAGAATACGACCCATGTGCCCCAGAAATTTCGCTACCCATTCTTTGTTGAGATCCACTGGTACATGTTGGAGCGCTACGTGAGCCACCTGACCGGCAAGCAACACTGTGTGAAGACAGAGCCGGAGACGGGTGACATCGATGACAAGACAGATGTGAAGTCTGTTTGCAGTAAGATGTCAGACAACAGCTCCAGCTCCGAGCATTCACGTTGTCGGAGTCGTATTGATGACGATGACTGGTGCTCATCGCCACGGAGTCCCATCATAGATGAACACAATTACGGATCTGACTCAAAGACTGACGTCAAACAAGACACCGGTTCTGGACTCGATTCTCCCAAACCTGTGGATGTTTCCGGTTCCGACTTGAAACGTTCTCGAGCATCGGTGAGAAACCACAATGAGAAAGTAAAAACGATGAAGAACGCTGACCAGTTGGACCTGATCAAGCCCGTGAGTGTGAAGCTGGAGAACTGTATGGCTGTGAGCAGTAAGAAACCATGGACTCACCTGACAAAGTACGAGTTAGAGGGCATTGCGGTCATCATTGATTGGCTGGAGCAGTTGCCAGCGAACAAGAAACGCGTGCCCGCTGATATACCTGAACCAGACGTCCTTCTCAGAGATGCAAAGGTGTTGCTGGCTGCCCATGCGTCAGATGACCACCAATTGGCCATCACAGGGGAACCCTCACTTAAGTGGCCTCCACAGAAAGAGAAACTTAAAAAACACCGCCTCATGACGCCCAAGAAACTAAAGACAGGTGGTGCTGCAGCGAGTGGTATCCGACGGCGACGAGTGCGTTGCAAGATGTGTGAGCCGTGCACACGACAGGAATGTGGCGAATGCAACTTCTGCAAGGATATGAAGAAGTTCGGAGGCCCAGGACGACTCAAACAGACATGCATCAGCAGACAGTGTATGGCTCCTGTCCTGGCCCACAGCGCTGTCTGTCACATCTGCAATGCAGCAGATGACATGAAACAGGAAGAGGGAGATGCCCCCTCTCTTCCCACCTCCCTTATGGAGTGCGGGATCTGCTGGGAGATTGTCCATCCCACATGTCTGGCTGAGAAGTTCCCGAATCTCTCACATGAGGGCATCATCAACGAAGACCTGCCAAGCAGCTGGGAGTGTCCGAAATGTTGTGATGGTGGCAAGCAAGGTCAAATGAAGCCTCGTACCGTGAAAGGGCCACAGAAGTCTACAACAGAACATCACCCGTCCACATCGGGCAGCGATGATTCCATCAGTGTCAAGGTGAAGGAAAACCAACCACAGTCGCCGCCACCAGATAGCACTGTAAAGCAGGGGGCGAAAATGCCGGAGCGACAACATCGCCGCACTCGCTCCAATCTCACCGACACCAGAAACGTTCTGGCCAATACAGAGGCTACGACTAACGGACATGGGGCTGTTGATTCTCAAATCAAAGGACGCAGACGAGCTCGCGAGGAGGCAGTTGAAAAAGATGTTGTACCAAAGAAAAAGATGTGCACTGGGGAGAGGTCACCCGTGAAGCAAGCAGCCACTGACCGCAATTCAGGCACAGCGAGTCCTGCAGCTCCACCTATGGGTAGTCCTGGCTCGCGTCTGACATCGCGTGGCAGAGAGACTGACTCTAATAAGGGGCCGTCTAAGAAGAGATTGTGCGCTGCTTCGTCATCTGGTCATGGAGCAAGCCAGCAAAGGTCAGGATCACCAGCGCCGCTGAGCATGTTATCCCCGGAAGAGAACGAGGAGGGCGCGGCCCAGGACGAGGAATCAGACGAACGGGACACGGGCGGCAGTCGTGAGAGGGAACCAGTGCCGCTGAAGCAGCCGCGTATTTTGATCCAGAAGTACGCCATCCGACCCGCTCCGGTTAGCCCGCCCCCGAAGTACGTGCATACATCGACTGGTGCAAGACACGTTCTAGACCATCCCCTGTGGTTGCGGGTCTTCTCGGCGTTGCCAGCCGCCGATCTGGCGCGTTGCATGGCCGTTTGTAAGACGTGGAACCGCTGGTGTCTGGACAGCCGTCTGTGGCGAGTCGTCGACCTCAGTCGGCGCCGGATAACGAAGCAGCACTTGATCGGCGTCGTCCTGCGTCAGCCGCTGCAGCTCGACCTCGGCTGGACCAACGTCAGTCGACGCCAACTGTCGTGGCTCGTTAGTCGGTTACCGCGACTAGCGCACCTCAGTCTGGCCGGCAACTGTTGGCAGGCCATCACGGCGTTGTGTTCCTCCTCCTGTCCGCTGCTAGTTGGTCTCGACCTGAAGTGGGCGCAGGGAGTGCGCGACCCGTGCGTCAAGGACTTGTTGTCGCCGCCCCTGGATCACCGCCCGGGAGTCGACGACACCGTCAGTCGTCTCCACCGCTGCGAGGCGCTCAATCTCGCCGGAAGTGACATCACAGACGCGTCAGTGGCGCTCATCGTGCGCTTCATGCCGCGCGTGCGCAGCCTCGATCTGAGCTACTGCACTCGGATCACGGACAGCGGCGTCGACATGTTGTCGGAGGCCAGCTCGTCGACGTGCACGAGTCTGGTTCACGTCAATCTGACCGGATGCCAACAGTTGACCGACACCTGCCTGCTGTACCTGAGCGGGGTGACGCAGCTACGGGACCTCACGCTGGCCGGGTGTCCGCATATCACGAAGCGCGCGTGTCTACAGTTCATCGAGAATGCGTCGAGTAGCAGGAATCTCGTCATGAGAGAGGACCGTCACATCGTCTCCGTGCAGTGA

Transcript

LLU|FUN_000706-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02008	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan
PF02373	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF16866	PHD_4	PHD-finger	Domain	Interproscan
PF17811	JHD	Jumonji helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002857	Domain	Zinc finger, CXXC-type	Interproscan
IPR003347	Domain	JmjC domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR041070	Domain	Jumonji, helical domain	Interproscan
IPR050690	Family	JHDM1 Histone Demethylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482	Biological Process	protein demethylation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0032452	Molecular Function	histone demethylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-