Gene detail

Detailed information of KAK2192413.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2192413.1	LETHAL 2 GIANT LARVAE PROTEIN	ctg30_pilon	577504	638667	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2192413.1

ATGTCTTCGACGCCCGAAAGTGTTGGAGCCAAAAAACTGGCAGCTTTACGCGTTGTAGATTTGAAACAGGAATTAGAAAAACGTGGACTTGAAAAAACAGGGGTTAAGGCAGCTCTCATCGATAGATTGAAGAAGGCACTTGAGGAAGAGGGAAAGGACCCAGAGCAGTTTGAAGTAGAGGTTACACCAAGTTCTGGTAGGAAAAGTCCAGCAAAAGAGGAAGATGAAGATGGTGATGGCGAGGTTGACTTGATTGAGGAAATAGATAATCTTGTCTCTGGTGATGGGGTTCAGGGAGATTCTGAGGATAAAAAGAGTGAGAATGGTGTGGTAGACTTGTTGGACCTTGCGGAGGAAGATGACGTTATATGTTTGACAGAGGTACAGGAAAACAAACTGCTGACCGATCAGACGGAAAGCCAACCGACCAACACGATTACAACTACAAAGGCATCTGAAGCTTCAGAAGCCAAGACATGCGCCAACACACCAGCTGCGACAGACAGCGCTAAAGAAAAGACAGATGCCAAGGTAGAGACCCCCCAGAAGACCCAGTCCGTGAAGCCAGTGCCCGCAGTTGTGTTAGATCCGAAAAAGGAAGAAGCCGGAAGTAAAGCAACAGCGCCCTCGGTGGAGAAGAATGGAGTGATGGAGACAACGGAGGTGGCCGACTTTGACATGCCTCTCATTGTTCACGTGGACGACTCGCTGAATGAACTCGACAGCGACATAGTGAAGAAACAAAGCCAGAGCGGTGCGAAGGATGGCAGCAGCACTGGCGTGGACCCAGGGCAAGGAGCTACACAGAAGGGGACGACCACCACTGGCAGCGGGGCAGCAGTCGGCGCAAGTGGCGATAGCACAGGCACACCGACAAGAGTCGACGCAAAGAGTAAGGATGGCAAGACAGACAAGGAAGATGCGAAAAAGGCTGAAGTTGGTAAAGGAGACGGGGCAAAGCTGTCCCAGCAGGAGACAAAGAGTACTCCAAGTAAGGATGCAAAACCTGCAGCAAAGGATTCTAAAGCTGTTCACCGAGTGTCAAGTGCGAGAGGTCGCAATTTGTGGGTGAGTGGTCTGTCGTCCACTACACGGGCCACTGACCTCAAGTCCCTGTTCAGCAAGTATGGCAAGGTGGCTGGTGCAAAGGTTGTCACTAATGCTCGCAGTCCTGGGTCTCGGTGCTATGGCTTCGTGACGATGTCGACACCTGACGAAGCGTTCAAATGCATTCAACATTTGCATCGAACTGAGTTGCATGGACGAATGATAAGCGTTGAACGCGCGAAGAATGACCCGGCGAGTCAGGCGAAGAAGGCAGACCCGAGCAAGAAGGCTGATGTCAAACCAACTCCAACTGCAAAGAAACCTGTTGAAAAAAAAGAAGCAAGCGTTGCTGTGAAGAAGACGACATCGTCTTCATCTAGTCATGGCACAAAGACGACGCCGTCACCACGTGCTGCTGTGAGCAAGGAAGCTGATCGCAAGCCACGGGGCAGCAGCACTGGCAGCAGCACCAAGAAAGACGACATCTTGTCGTTTGAAAAGATCCGGACTGAGAGGCAGCGTGCTCGGTTGCGGGAGATGGAGCGGCGTATGAGGGAGGAAGAGAGGAGGAAGGCGAGGGATTTAGAACGGGAGAGGGAGAAACAGAGAGAAATTGAGCGGTGTCAGAAAGAGGAAGCTGTGCGACTGGCTAGGGAGAAGGAACGACTCAGGTTGGAGAAGATGCGACTGGAGCGGGAGAAGATTGAGGCTGAGAGGGAACGCATCCGTCTGGAGCGGGAACGAAGGGAACAGGAACGATTGGTGCGTGAGAGGGAGGAACAGCGGCGCATAGAACAACTAAGAGTGGAAGAGCAGAGGCGGTCAAGCAGCAAGCGTCAGTTTGACAGTCGCGGCAGTCGTGACTCGTGGAGTGAGCCGGCCAAGCGCCCAGCACTAGAGAGTAGCCGTGTGAACAATGCCGCCCCGTCTAGCAGCTACCCACCACAACAGCCACAACAACACAATAGGTACAATTCCTACGACCAACGTGGCACCACAGGCAGCCGTGCAGCACCAATGGCCGACAACTCCAACCAGTATGACCGCCGAGTAGACAGGTACGAGAGACACGAGCAGCCAGCGTCACGTTACACAGAGCGCCGTGACAGTCACGAGTCAGTGCGGCGTGACAGAGATGACCGCCGGGTGGCTGAGACCAGAGCACCGAAATATGACAGATATGATGAGAGGGCAAGAGGTCATGAGCGACATCATGAACCTCACCATAGTACAATGCGGAATTCACCCCCTCGCCATAGCAACAACATACCTTCACAGGGCCACCGGGATAGATACCCTGACTCTGGATTCGTCAAAGATACCCGTGGCTATGTTGGTGACACCCGCACTGTGACACCACGTGACGGTGGTAGTTGGCACACCAGTCAGCCAATGACAGACAGTCGCAGTAAGCCACATGTCGGAGGCTACGGCGCTGGCCCAGGGAGTGCGTCTGCCCCGATGGACTGGGGTGCACCAACAAGGGCGCCCCAGGTACAGCCCAGCTCTGGCCGAGTGACTGACCGTTGGCCAAACCCCATGTCATCAGGCATGGACACACACATGCGCACGCCCCACCAGCACGGGGGCGCCGGTGTTGTGAGCATGAACGCCCCGATGATGCAGGCACCACCCACCAACAACACGTTCCTTCAGTCGGCTGCTAACATCATGATGGGAGTGGGGCTGGGTGGTAGACAGCAGCCAGAGATGCGATACGATGCCTACAAGAACATGTCTGGCAACCTCACCTGGAGCCAGCAGGAGATACAGACAAAGATGGCGGCGACAATGTTGAGGAAATTTGGATTTAAAAAGTCGGAGCCACGAGAGAGCGAAGCTCGGTTGAAATTGCAGAAGGAACTGTTTGCGTTCACGAAGTGCGTGGAGCATGGCTTCCCACACAAGCCAAGTTCTCTGGCATATGACCCCAAGCTTCGACTCCTTGCCATTGGAACAAAGACTGGAGCAATTAGAGTTTTTGGACAGCCCGGAGTGGAGTTCTCTGGACAACACGAGGAGGATGTGTCCGTGCTGCAGTTGTTCTTCCTGCCTGACCAGGCGCGTCTTATCAGTGTGTGCAGTGACAACTCTCTGCACCTGTGGGAAATTAACATCAAAGATGGCTCCTCTATCATTGAGCATGTGCTGCAGTTCTCCATGGAGGCCAGCAAACTGAAGACCATCTCATCATGCTGTCTGACGGCGAACTGCGAACAGTTGCTGATGGGGACAGAGGGTGGCAACATCCACCTGCTGGACACAAGCAAGTTCCAGCTGAGCGAACACGTCATCTACCAGGACGTTGTCATGCAGAATGTTCCTGACGACTTCAAAGTGAACCCAGGCGCAGTGGAGGCAATAGCCCAGCACCCCACAGACGCCACCAAGTTTCTCATAGGCTACAACCGTGGTCTGATTGTACTCTGGGACAGCAAGGAGAACAATGCTGAGCAGACATACAATGCCACACAGCAACTGGAGTCGCTGGCGTGGCAGCGTGGTGGCACACAGTTCATGAGCGCCCACTCTGATGGCAGCTACACCATCTGGAGCGTTTCTGACTCGACAAAGCCCATGGAACAGGCAACTACGCCGTATGGTCCATTTCCTTGCAAAGCCATCAACAAGATTTCATGGAAGACCACAAAAACTGAGCCGTTCATCATCTTCTCTGGTGGGATGCCCCGGGCGAGCTACGGAGACAGGCACACAGTAAGCGTGATGCAGGGCAATGCACAGGCCCATGTTGTCTTTGAGTTCACGTCACGCGTCGTTGACTTCGTCACTCTCTGCACCAGCGATGAGACAGAAAACCTAGAAAAGATGGAGTACGACTGCCCTCACTCTGTGCTGGTGTTGGTGGAGGAGGAACTGGTGGCCCTGGACCTGGAGACAGACGGCTGGCCCTGCTACAGACTGCCCTACCTGTGCAGTCTCCACTCCTCAGCCATCACCTGCGCCCAGCATGTCGGCAACATCCCGGAGCAACTCGCCAACAAGATCATAGACGCCGGCGAAACACAGATGCCAAACTTCTCCGGCAGGGACTGGCCCATACAGGGGGGCACAAACTTGCAGCAGTGGGCTTCTCGGGACCTCCTTCTCACAGGACACGAGGATGGCTCCATCCGGTTCTGGGATGTGTCGGGCGTGGCTGTGTCACTGCTCTACAAGCTGCAGACAATGAACATCTTTGGGGACGGCCTAGTAGAACAGGGGGCTGCGGACGCTGACGAAGAGTGGCCACCATTCCGCAAGGTGGGGACCTTTGACCCCTACAGCGATGATCCCCGACTCGCCATACAGAAGATCGTGCTGTGTCCGTTCAGCGAGACGCTGGTGGCGGCCGGAACCGCGGGACAGGTCGTTGTGTTTGAGCTGAGTCGAGAGGAGCAGGAACAGGAGGTGAAGGTCGCGTCGGTGAACGTCGTCAGCGACCGGGACAACTTTGTGTGGAAGGGGCACAAGGCACTGCCCGTGAAGAACGGAGACCTCAAGTTTCCCCCTGGCTTCCAGCCCATGTGTGTGGTGCAAGTGCAGCCCCCTGCCGCCTGCACTGCCCTTGCACTGCACCCCGAGTGGCAACTCGTTGCCGTGGGAACAGCACATGGCTTCGGTGTATTTGACTACATCCAGAGGTCTCAGATCAGCAGCAAGTGCACCCTGAATCCCAGCGACCTGACAGGGACAGGAGAGAGTGCAATGTCCCGGCGCAAGTCTTTCAAGAAGTCCCTGCGTGAGTCGTTCCGTCGTCTGCGTGGGAGACGGTCCTCAGTCCAGGGAGGCAGACGCAAGGCAGGGGACAGTCCCATGGGGCAACAGAGGGAGCCACCGCAGCATCGGCCGAAGGCAGTGCTGCACATGCATCTGAGGGCGCAATGTGCGGCAGCTGCGGAGGCGCCATCTAGTGCAATTGAGTCACCGAAGCCAGTTGAGCGTCAGGTGGAGGCTCGGTCGACAGACGATGCGATGGCCTCCATGGTGAGGGTGCTCACCTTCTTTGACACCTTCCTCATCAACGGCCAGAGTCACACCCCCACCTTGTGGGCTGGTACCAACGCCGGTACTGTCTACATATACCAGATCACAATGCCTGCCAGTGACAAGCGTGACTCGGAGGCGGTACAGTGCCAGATTGCCAAGGAGATCCAGCTGAAGCACCACGCCCCAGTGATCAGTATCAGCGTGATAGACCGCAATGCCCAGCCCCTGCCTGCACCCCTTGAGGTGCAGCACGAGCGTGTCAAGGCCCCAGACATGTCCGGCAACCACCAGGTGCTGCTGTGCTCAGAGGAACAGTTCAAGATCTTCTCGCTGCCGAGTCTCAAGGCCAACAACAAGTACAAGCTGACAGCGAACGAAGGGTCCAGAGTGAGGCGGGTGGGCTACGTGAACTTCCGCAGCCGCAGTGGCAAGTATCACGTCTACTATGAGCGCTACTCTGAGAATGACCTGGTGTGTTTGACGAATCAGGGCGACATAGAGATCTTCACCCTGCCCCAGCTGCGCAGACAACTGAAGGAGTCGTGTATCAGGAAGGAAAATGTCAGCGGCATCGTTTCGAATGTGTTTGCGCGCAATGGTGAAGGCTACTACCTGAGCTCCCCGTCAGAGTTTGTGCGCTACTCCTTGTCCGCACGCTTCATCCCCAAGCCGATGTGTATGGTCCAACTGAAGGAGGGCATGCGCAAGCCACGAGAGGAGCCACCAGCTGTCGAGATCGCTGTTGTCGAGCCAGCCGCAGAGACCCAGGCGAGTGGAGACGCAGACAGACTAAATGAGTCGGAGAAACAGGACGAGAGCACAGCAGAGCCAGCCAACGACTCACTGGCTGCCGGAGACATCACAGCCGACAGCGTCAAGATCCACATCACTGAGAAGGTGGAGGAGGCCGTTGAAGCGTGCGCAACAAAAGTTGAGGGTTGCGTCACAAAGACAATCGTCACAAAGACAACGGTCGTGTCGGAGACGCTGGACAACGCGGTGACCGTGACAAAGGAGACTGTGACCAATACCGTGGAGCAGGCCGCTTCAGCCGTGGAGGGTATCACCCTCGGGGGCTTCACAGCGCGGGGTGAAAACGTTGACGATGACACAAAACTGAGCGGGGAAGGGACAGACGAGGGTCGACAGAGGGTGTGTGGGTTCCGAACCCTCGCCAGTGCAGCTCTTCTCTTCACCCTACACCTCCACTTACTCATTAGCTTCACCGCAAGACTCTATCTGCAGCTAACTGAGTCAGTCGAGCCAACAGACCTCCTTGAAGAGCTCCACATCACTGAGGAGGGCGACGACGACAATTTGACCGTGTCACCCGAAGCAGCAATGACACAGGCGACACCCGACGTCGACATGGCACCGACCGAACCCCAGCTGAAACTGGACATACCAAAAGTAGTGATCGTGGCGCCGGACGACAGCAGCGACGTCCCTAACGACGATGACGCTGACGCTGCGGTGACAGCAGTTGTCAACCACAATGGACAGCCGTCGGTGGACAATGACGGGGCAGCAGTCATGGACAATCAAACAAAAGTAGATGGCGCCGCTGAGACGTCGACAACGAGTAACTCAGTGTGCCGTGTCGGTGAGACAATGAGTTGA

Transcript

Protein

KAK2192413.1

MSSTPESVGAKKLAALRVVDLKQELEKRGLEKTGVKAALIDRLKKALEEEGKDPEQFEVEVTPSSGRKSPAKEEDEDGDGEVDLIEEIDNLVSGDGVQGDSEDKKSENGVVDLLDLAEEDDVICLTEVQENKLLTDQTESQPTNTITTTKASEASEAKTCANTPAATDSAKEKTDAKVETPQKTQSVKPVPAVVLDPKKEEAGSKATAPSVEKNGVMETTEVADFDMPLIVHVDDSLNELDSDIVKKQSQSGAKDGSSTGVDPGQGATQKGTTTTGSGAAVGASGDSTGTPTRVDAKSKDGKTDKEDAKKAEVGKGDGAKLSQQETKSTPSKDAKPAAKDSKAVHRVSSARGRNLWVSGLSSTTRATDLKSLFSKYGKVAGAKVVTNARSPGSRCYGFVTMSTPDEAFKCIQHLHRTELHGRMISVERAKNDPASQAKKADPSKKADVKPTPTAKKPVEKKEASVAVKKTTSSSSSHGTKTTPSPRAAVSKEADRKPRGSSTGSSTKKDDILSFEKIRTERQRARLREMERRMREEERRKARDLEREREKQREIERCQKEEAVRLAREKERLRLEKMRLEREKIEAERERIRLERERREQERLVREREEQRRIEQLRVEEQRRSSSKRQFDSRGSRDSWSEPAKRPALESSRVNNAAPSSSYPPQQPQQHNRYNSYDQRGTTGSRAAPMADNSNQYDRRVDRYERHEQPASRYTERRDSHESVRRDRDDRRVAETRAPKYDRYDERARGHERHHEPHHSTMRNSPPRHSNNIPSQGHRDRYPDSGFVKDTRGYVGDTRTVTPRDGGSWHTSQPMTDSRSKPHVGGYGAGPGSASAPMDWGAPTRAPQVQPSSGRVTDRWPNPMSSGMDTHMRTPHQHGGAGVVSMNAPMMQAPPTNNTFLQSAANIMMGVGLGGRQQPEMRYDAYKNMSGNLTWSQQEIQTKMAATMLRKFGFKKSEPRESEARLKLQKELFAFTKCVEHGFPHKPSSLAYDPKLRLLAIGTKTGAIRVFGQPGVEFSGQHEEDVSVLQLFFLPDQARLISVCSDNSLHLWEINIKDGSSIIEHVLQFSMEASKLKTISSCCLTANCEQLLMGTEGGNIHLLDTSKFQLSEHVIYQDVVMQNVPDDFKVNPGAVEAIAQHPTDATKFLIGYNRGLIVLWDSKENNAEQTYNATQQLESLAWQRGGTQFMSAHSDGSYTIWSVSDSTKPMEQATTPYGPFPCKAINKISWKTTKTEPFIIFSGGMPRASYGDRHTVSVMQGNAQAHVVFEFTSRVVDFVTLCTSDETENLEKMEYDCPHSVLVLVEEELVALDLETDGWPCYRLPYLCSLHSSAITCAQHVGNIPEQLANKIIDAGETQMPNFSGRDWPIQGGTNLQQWASRDLLLTGHEDGSIRFWDVSGVAVSLLYKLQTMNIFGDGLVEQGAADADEEWPPFRKVGTFDPYSDDPRLAIQKIVLCPFSETLVAAGTAGQVVVFELSREEQEQEVKVASVNVVSDRDNFVWKGHKALPVKNGDLKFPPGFQPMCVVQVQPPAACTALALHPEWQLVAVGTAHGFGVFDYIQRSQISSKCTLNPSDLTGTGESAMSRRKSFKKSLRESFRRLRGRRSSVQGGRRKAGDSPMGQQREPPQHRPKAVLHMHLRAQCAAAAEAPSSAIESPKPVERQVEARSTDDAMASMVRVLTFFDTFLINGQSHTPTLWAGTNAGTVYIYQITMPASDKRDSEAVQCQIAKEIQLKHHAPVISISVIDRNAQPLPAPLEVQHERVKAPDMSGNHQVLLCSEEQFKIFSLPSLKANNKYKLTANEGSRVRRVGYVNFRSRSGKYHVYYERYSENDLVCLTNQGDIEIFTLPQLRRQLKESCIRKENVSGIVSNVFARNGEGYYLSSPSEFVRYSLSARFIPKPMCMVQLKEGMRKPREEPPAVEIAVVEPAAETQASGDADRLNESEKQDESTAEPANDSLAAGDITADSVKIHITEKVEEAVEACATKVEGCVTKTIVTKTTVVSETLDNAVTVTKETVTNTVEQAASAVEGITLGGFTARGENVDDDTKLSGEGTDEGRQRVCGFRTLASAALLFTLHLHLLISFTARLYLQLTESVEPTDLLEELHITEEGDDDNLTVSPEAAMTQATPDVDMAPTEPQLKLDIPKVVIVAPDDSSDVPNDDDADAAVTAVVNHNGQPSVDNDGAAVMDNQTKVDGAAETSTTSNSVCRVGETMS

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF02037	SAP	SAP domain	Domain	Interproscan
PF08366	LLGL	LLGL2	Family	Interproscan
PF08596	Lgl_C	Lethal giant larvae(Lgl) like, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000664	Family	Lethal(2) giant larvae protein	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR003034	Domain	SAP domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013577	Domain	Lethal giant larvae homologue 2	Interproscan
IPR013905	Domain	Lethal giant larvae (Lgl)-like, C-terminal domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR034781	Domain	Scaffold attachment factor B1/2, RNA binding domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036361	Homologous_superfamily	SAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008593	Biological Process	regulation of Notch signaling pathway	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0030866	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0032878	Biological Process	regulation of establishment or maintenance of cell polarity	Interproscan
GO:0045159	Molecular Function	myosin II binding	Interproscan
GO:0050708	Biological Process	regulation of protein secretion	Interproscan
GO:0051294	Biological Process	establishment of spindle orientation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-