Gene detail

Detailed information of KAK2192020.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2192020.1	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	ctg40_pilon	134429	158023	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2192020.1

ATGTACTTGACCTGTGACCTTCCCCCTCCACCCCTCTACCCTGACGACACACAGGAGAACATCATCCCCCAGGTGCCCATCTTCAGCATCCTCAACAAGTTCAACGGCATCAGTGAGAAGGAGTACAAAACCTACAAGGACTCAACCCTGAAGCGCTTCGAGATCACTCACCTACCCCCCTACATCATCATCTACTTCAAGGTGAGATCACTCACCTACCCCTCTACATCTTCATCTACTTCAAGGGGGATAGACTTCGGAGAGCTGCTATCACCAGAGGTCAAGGCCAAACACAAAGACACGACCTATGACCTTGTTGTGAACATTGTTCATGATGGAGAGCCAGGCCCCAGTAAAGGCACATACAGGGTACACATCCTGCACAAGGGCAGTGGCAAGTGGTACGAGCTGCAGGACCTACACGTGGCTGACATCCTGCCCCAAATGATTACCCTGTCAGAGTCCTACATCCAGGTGTCCGAGTGTCGCTGCGCCGTTGTCAGTGGCGACTTGTGTTTGCATTGCGTCTACCGCGGCGACTTGCGAGTTTTCTCCAACGACGGGAAACTTAACTCCGGGAGCAGAGACAGAGTGTTCCCGCAAGCAGCGTCCGACGCCTCGCCCGCCCGGCCGTCCACCATGTTGCAGGTGAGCACTTCCCGGCCCGGCACCCAACAGAGCCTGAGCGCCCGCCTGCCCGAGATCCAGCATCCTCTCTCCCGTCTCGGCAACCCCGCCACCTTGGATGTGCGCGGCGTCTCCCGCAATGGCTTCGCCGATCGTCCGCTATCGGAGGTGGGGTCCATCACACGCAGGCCGCTCGCCAACGAACACGACTTCGACAGACCAGTGTCGTATCGGTCGCCCCGGCGTTCCATCCACACACCCTCCGAGGGGCGAGTCTCCAAGCTGAGTTTGCTGAAGGACCCTAGTCCGAGACACTATGAGGCCATACCCGAGGGCGTGGAGGTGACACACGGAGACCCCGGCAAGACCCGACTCCCTGTATTTGGCAACCGTGCTGGGATAGCGAGTCGCGGTGAGTCGAGTCACAGTGGCCTTGAGAGTCGACTCTCAGACGCCTTGCACCGGATCCTGGTGGTGATGTTGAACAAACAAATCACAACATCTCAGTTCAAGCGTCTCATGGAGCGACTCAGTCTCCATGACAAGGTGGTGGTCAGTGTGGCAGAGTTCTATGCTGCCACCCGCCAGGAACCCTCCAACGAAGTACAAGACATGATGGACATGATGCCACGGTCGGATCCAGATGGCACAATTCACATACTCAAGCCAGAACTGCGAAGTGTCCTCAATCGTATGGGCTTCAGTATGTCAGACGCAGAGTTTGACAAACTCTGGGATAAGTACGACACGGAAGGAATTGGAACAACAAGTGGCGAGAAAATCATGCAGAAGCTTGGCATACTCATACAGAAACATAACGAGGCGGACAACCCAGACGAGCCAAGTGGGCAGCCGCGTGGACTGAGGAGGAAGGAGAAGGACCGACAACGCTCCCTCGACATAGAGCGCTGGCTGAAGAGCAAGTTCCGCGAGGGTTGCAGCATGATGAAGGCTTCCTTCCAGAAGCACGACCCTCAGCGGTCCGGCCTCGTGAGTCATGATAACTTCCTGGCCGTGCTGGCAGACTTTGGTCTGCGACTGGAGAAGGAGCACCTGGCAGAGTACAACAAGGCCAACAGCACAACCACATCAATCAAGTCCACCTTCAGCGCACTTGAAGCTCAACTCATGAGTATGTTCCAGACAGATTTCCTGTCACTTCTAGGAACATTCCATAAGATAGACAGACTTGGCCTAGACATCTTGAGTCAGGAGGAGTTCCGGGCGGCGATAGAGAGTAAGTTTGGCCTGGAGATGACAGATGACCAGTTCCGGTCCATGCTTGACCGCGTACCACTGGACGAGGAGGGAAACGTCCGATATGCAGACTTCATGGCACAGTTTGACACCAAGGGTGAAGCGCCTAGTCTGTTTGCTGAGATCAGGGCAGACAGACGTAAAGGCCCCATACCCGCCCTGCCCAAGGACAAGACCCCGCTCCCTCCCCCCACACCCCCATCGAAAGAGTCATCATCCCAGGTGAAGGAGTCGGCATCTCCAGTGAAGGATGACACCTTCAAGGATGAGCCGTTTGATGCCCCAGTGCATGGAGAGGTGCAGAAGGACGATGACAAGTTCATGGTGGACATGAGGCCCCGGCGCACAGCCTCAGACATCTTCAGCACCATCAAGACCCTCCTGAAGCAGGACTACCAGGCAGTGGAGGCCGCCTTCCAGGACCTCGACACCCTCAACACACGCCGCATCTCACAGGAGATGATGTACCAGCTGCTCAAGAAGTTCCACATAGAGCCAGAGATAACCCGGGGTGAGATCAGAGACATCTGGAAGACTTTCATAACCAACTCTGACAAGACGCTTGAGTTCCTGCAGTTTGTACGTCACTTTGGTTACTCCATCCAGTCAGCCGCCTTCCCCAGCGCCAAGGTCAGCCCACCCAAGAAGGGCGACAGCGACTTCATGATGAGGTCACGCAAGCTGAACTGTGCCCGCGACATGATACATGACTCACTCAGGTCAAAGATTGAATACATGTGGGAGGACCTGAGACGAGAGTTCACATCAATGGATCCCTACCAGACGGGGTGTGTGAGTGCGGGAGAGTTCCGGGATGTGCTTCAAGAGCTCTGTGTACATCTCAGTGACTACGAACTCGATATGCTCACTAGGAAGTTCAGTTTGCAGGACGGAAGAGTGTCGTATATAGAGTTTCTGAAGCCATATGCACTGAAGAAGCAGATCTGGCGCTATGGCAACGACATGATCACCCTACTGAAACACTCCCTAACAGACATCCCAGCAGAAGTGATCATGGGGCCTCCGAGGGAAGGCGGTCTTGAAGGAGTCACCATGAAAGTGAGACAGAAGGTCCAGGGAGACTGGAAGTATCTACGTCGAGCCTTCAAGAAGCTTGACACAAACAACAGTGGCCATGTGACGCTGGCCCAGTTCCGCTCTGTGCTGAAGTTGTCCAACATCACGCTGACTGAGGATGAGGTGTATCAGCTGATGAGTCGCTTCGATGAGAACATGTCAGGCAAGGTGGCCTACAACAAGTTCCTGTCCGACACGTTCACCATACAGATTCCACCCTCACGCGAGTCAATGGTTCGTCACTCTGCCGAATTGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF08976	EF-hand_11	EF-hand domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015070	Domain	DJBP, EF-hand domain	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR052603	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-