Gene detail

Detailed information of KAK2181862.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2181862.1	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	ctg378_pilon	142552	164792	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2181862.1

ATGAGGAGAGGTGTGTCCAGCCCCACCTACCCAGACTTCATGGTCCGCAGTCCCCTCACAGGTGAGCCCATCTCGAACTTCGCCTCTCGCATCCAGTGGGAGCAGTACCAGCGCGCCATGCAGTACAACAGCCCCCTGGTGGCTGGCCACAGAGGCTTCAGTCCCGGCGCTCTAGCAGGATACCCACCGGGGTATTTACCTCACCCGCCATCCTACACACCCTCCCTGGCACTGAGCCAGCGGAGCATGTTTAGTGAGAACCCAGCGACCCCGGGGAGTGGAAGTATCACCCTACCTGGATCTCTAGACTGCTCGCGACTTACCAGTCCCAGGCCGTCGATTATTGGGAAGAGTAGTCGCAAGAGGGCGCTCTCGCATTCACCGTTCTCCGACTGTGGCCTTGACATTGAGAGTCTGACCCGGAGTTCAGAGGGGTCGCTTCGGATGACCCCGTACAATTCGAACTCAAGAAGTTCAAGTGGCTCTTATGGTCATTTGTCAGCAGCTGCCTTTGGCCTTCTCAGTCCCACCCACACCCTCCCTCAGCACCCCTTCTGGCCTCACAACAGCCTGCCCAGCTCCACCCCCTATTACCCCTCCCTCTTTCCCTATGCCAGCATGCTGCCCCACCCAGGAAGTGGGGGTCTGCCCACCAGTCAGCCCATGGTGCAGCCCCTGGGGCCCTCCAAGACACAGTCCCAGATGTCGTCGACGACAATCAAAGACCAGTCGAGTCACAACCAGGTGTCCAGCACAGTCAGCCACAAGGACATGAAGAAGTCGAAGGTGAAGACAGAGATGGACGACTTCCCAGGTACGCCAGCTGAGGTGAAGCCATGCCACGAAGGACGACCTTCGGGTGACCTTGATGCCCACCGAATGTTCTATGACGCAGAGCCAGACTTTGTCGAGACAAACTGCCACTGGATGGACTGTAAGCTGGAGTTCAACACGCAGGAGGAGCTGGTCAGGCATCTGAACGTGGACCACATCCAGTCGAACAAGAAGGCGTTTGTTTGTAAGTGGTCGGACTGCTCCCGGCAAGAGAAACCCTTCAAGGCCCAGTACATGCTCGTTGTACACATGCGACGACACACGGGCGAGAAACCACACAAGTGCACGTTTGAGGGGTGCAACAAAGCGTACTCAAGACTCGAGAACCTCAAGACGCATTTACGCTCTCACACGGGAGAGAAACCTTACATGTGTGAGTTCCCAGGATGCACCAAGGCATTCAGCAATGCAAGTGACCGAGCGAAACACCAGAACCGAACACATTCAAATGCCAAGCCATATGTGTGCAAGGCCCCAGGATGCACAAAGCGATACACTGACCCAAGTTCTCTACGCAAGCATGTGAAGACAGTCCACGGCCCAGACTTCTACGCGAATAAGAAACACAAGGGGGACCAGCCATCACCAGGTGGCAGCAGCAGTGGTGGTGGTGGTGCCATGAACGACGCAAGCCCGAGGAGTGATAACAATGATGATCTAGACAAGAAGTCAGAAACCAGTGACCAGTTGACCAACATCAAGACAGAGGACCCTGTCCCCGTGTCACAGATGCCTTCTAGTGATAGTCAGTCGTCAAAACAGCAGACTTTAGGACTGTCACCCCTGGGTCACGGCCAAATGAAGATGTCGCCTATGTCACAGCGGTCAGACCATAGTCCAGCACTGCCCCGTGTCCACAGCTCGCACAGCCTCGTTTCCAATAATCGCCATGACGATGACCTCGACCGAGGTGGCGCCAGTAGCTCCCACCTGCCGAGCAGTGTGGGAAGTCTGATGGACGACTCGGACGACGAAGACTCTGATGAGATAGTGTTACCGGCAACGACCGTGAACCTAGGGTCATCAACGTCCGTAGGAGCCACACGGACCATGCAGCCAAACCGTCTCACTAGTCGTGTCAGACGGACCAGACATATGAAGAGTTCTTCTGTGTCCAGTCTACCGCCAATAGGTAACTTGCGGAGAAGTCAAGGTCAGACGGGTCAAGGTCTTCCGTCGATGACGGAGGTGTCACATCGCATGCCACGTGTGAATCAGAGTCCACAAAGACGGCAGATTCAGAACATCATTAGTGTGAGTGCGAAGGAGACGATGGGTCTCGGCAGTTTCTCGGGCACGAGTCGTCGTGACAGCGGCACAAGCACAATCAGCTCGTACATGGGCAGTAGCGCCAACTCGGCCAGTCCCTACCGCTTCTCCGGCCAGTTCTCCCGACGCTCCAGCGACAACTCGCACCAGTCCAGCGACGCGTCCCGTGTGTCGTCGAGGACTAGTAACTCGCCGTACGAGTACGACATCAGTCTGCCCGGCCTCGATTCACCACGCGACAGCATCGTCAGCAGCCACATCGGCAACATGACGATGCAGTTGGAACGAACACAACTGGGCAGCAACCCAAATCTGATGTCGCCCGGGTCGGCGGGTCAGCAGCCGTCGCCGTGTGGTCAGATGCAGCGGCAGGAGAGGGGAGTGAGGTGTCGCAAGGACAGCGACTCGTGGAGTGTCGGCACGCCGGGTGTGCTCCCCGAGGGACACAGTCAAGCGCGTACGGCGGGCCAGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043359	Family	C2H2-type zinc-finger protein GLI-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-