Gene detail

Detailed information of KAK2178546.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2178546.1	ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL	ctg539_pilon	273878	296583	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2178546.1

ATGAAGAAACTTCTCGAGAAATGTCTGCTGATATACACAATGACCAGAAACCTGTCCTGCATGGACCCTGGAATGATGGCGACAAAGAAAGAAGACTATGTGGCAAAGTTTTACAGGGTCCTTCAAAAGATGGTGGACCTGAACCAGTCAGCCACTGTTGAGAGGGTTCTCAATTCACAGTCAGCCACTGTTGAGAGGGTTCTCAATCAACAGTCAGCCACTGTTGAGAGGGTTCTCAATCAACAGTCAGCCACGGTTGAGAGGGTTCTCAATCAACATCAGCAGATCGTTGAGAATCTGAACGAGGAATCAGTTTTCACGCAGCGCATTGTCTATGATGCCATTGCTGCTGCAGGTGGCATTCCGAATGTGTCGGTCACAAAGTCCTTGTTGTGTTACGCGCGAGCTGCCAGGCAGGTGTACATGACGTACCTGGATGCTGAGAGAGCGAAGAAGGCAGCACTTACGATAGGGACAAAGCGTAAGTTGGACACGGATGCCTTAGATAGGCTAGAAGCGAAACGTCGTCGTCTACAAGATGACATGGATGCTCTGGAAACTTCAGCAGATGAACTTGCAGATGGTGCTGAGAATGCGAAGAAGTTCTGTGAAGATGTTGGGTACCCGTGTCTCATTCGCCCATCCTACGTGCTCAGTGGCGCCGCCATGAATGTGGCGCACTCGAATCGCGACCTTGAGATGTACTTGACCCAGGCGAGCGCCGTCTCGAAGGAACAACCAGTGGAGATAGACGTGGACGCAGTGGCGGCCGCGGGCGAGGTGTTGTGCATGGCGGTGTCGGAGCATGTCGAGAATGCGGGGGTGCACTCCGGAGACGCGACCCTTGTCACCCCGCCCCAGGACATCAACGAGAAGACGCTGCAGAAGATCAAAGGGATCTGCTGCTGTATCGGGCGTGAACTCGAGGTGTCCGGACCATTCAACCTGCAGCTCATTGCAAAGGTGTCAGTGTTCTCGTACGCGCGGCTGGCGGGAGCCGACGTCTTGCTGGGAGTGGAGATGGCGAGTACGGGTGAAGTGGCCTGCTTCGGCGAGGATCGTTTTGAGGCATATCTCAAGGCACAGATGAGCACCGGCTTCAAAATCCCACGCAAGAACATCCTGTTGTCCATAGGCAGCTACAAGCACAAGGTGGAGCTGCTGCCGACCGTGCGAAGTCTGGAGAACCTAGGCTACAAGCTGTACGCCAGCATGGGTACCGCTGACTTCTACTCCGAGCATGGCGTCAAGGTGAAGGCGGTGGACTGGCCGTACGAGGACACGGGCAAGGAAGGCTCGGACAAACAGAACGGCATCCACCAGCGCTCCATCGCCAACTACCTCGCCGACAACAAGTTTGACCTCGTCATCAACCTACCGATGCGTGACGGTGGGTCACGGGCCGCGTCGTCGTTCGTGACGCAGGGTTATCGTACGCGACGCATGGCGGTCGACTACTCCGCTTTGCGACGACTCGGCAAACCTCCCCCGATCAAGACGAACATTGACTGCATCACGGCACGCCGCATCATTCGTCTGCCAGGTCTGATTGATGTCCATGTCCACCTGAGGGAGCCCGGTGGCACAGAGAAGGAGGACATCGCGTCCGGCACTGCGGCCGCACTGGCCGGGGGGATCACGATGCTGGCGGCCAGTACTGCGCGGTGTGACTACGGCCTGTACGTCGGGGCCAGCAAGGACAACGCGACGACCCTGCCGCTGCTGGCGCGTGACTGCGTCGGCCTCAAGATGTACCTCAACGACACATTCACGACACTGAAGCTGGACAGTGTCACCAGCTGGATGAAGCACTTTGAGCACTGGCCAAAGACAATGCCGATTGTGGTTCACGCGGAGGGTCAGACAACGGCGGCCATCTTGCTGTTTGCAGAACTCTTCCAGCGATCGGTTCACATCTGTCACGTTGCCCGGAAGGAGGAGATCCTGGTGATCAAGGCGGCGAAGGAACGAGGACTTCAAGTGACGTGTGAAGCCGCACCCCATCACCTCTTTCTCACCTTGGATAACCTTGAGAAAATCGGCACTGGACGAGGTCAAGTGAGGCCGATGTTAGTGACCCCAGAAGACCAGAAGGCATTGTGGGAAAACCTCGATGTCATCGACTGTTTCGCCACAGACCACGCGCCACACCGGGTGGAGGAGAAGGACAGTGAGCACCCTCCGTGTGGCTACCCGGGGCTGGAGACCATGCTGCCCCTACTGCTGACCGCTGTCAACAGTGGACGACTCACTCTCGCCGATCTCATAGAGAAGCTGTACGTGAACCCGCGCAAGATCTTCGGGCTGCCCGACCAGCCTGACACGTACGTGGAGGTGGACTTGGACGAGGAGTGGGTCATTCCCGCAGCGATGAAGTTCACCAAGTCGAAGTGGACACCCTTCGAGGGCATGAAGGTCAAGGGGGCAGTTCGCAGGGTGGTGCTGAGGGGCGAAGTCGCCTACATCGATGGGCAGGTACTGGCGCCCCCTGGTTACGGCCAGGATGTGCGGACGATGGTGCGACTGGAGGAGAGGGTCAGTTCTCCCATGGTCATCATCCCGGACTCCCCAGTCGACTCCCGCCACTCCTCAGCCCCTGCCAGTCCCAAAAAGGCCCCCTACGACACCAACAAATTGACTCAACCGCCCCGAGTCACTCGGCTCTATCGTGACGACGCAGTGGCTGCTGGGGGAGACGCCCTCACCCTGTGTGATGGAAATAATGCCCCGAAGTGGCAGACAACTCCATTCTACATGCCCATGTCTGTGGTCAGTCCAACCGCCGGACTTGTTGGTCAGCACATACTGACTGTCAACTTCACGAAGGAACAGGTTCATCAGCTGTTCAATCTTGCTCACAACTTCCGCGTCGCCGTGCACAAGGACCGACCTCTGGATGACATCCTCAAGGTCAACTATTGCTTTTTTGCACCCAGCACAAGAACAAGTTGCAGCTTCACGGCAGCCATGCAGCGACTGGGGGGCACGGTCATCCACTTTGACGAGGCGACCTCCTCCACTCGCAAGGGAGAGACTCTGGCCGACGGGAACAAGAGTTGCATCTTTGAAGTTCTACCGGACAGGTCTGCTCTCGCAGTTAAAGGCGAAGAGTTGGACAAGTTGTTTAATACAATCCAGATGATGGCAGCCTACTCCGACGTTGTTGTACTGCGTCATCCCCAGCCGGGCGCTGTCAGTATGGCCGCCAGACACAGTCGTAAGCCCGTGATCAACGCGGGAGACGGGATCGGGGAGCATCCCACGCAGGCCTTGCTGGACGTGTTCACCATTCGGGAAGAGATCGGCACCGTCAACGGTCTCACGATCACAATGGTGGGAGACTTGAAGCACGGCCGCACCGTGCACTCTCTCGCCCGTCTCCTCACACTCTACAAGTGTAACATCAGATACGTGTCCCCCAAAAGTCTACAGATGCCTGACGACATCCAGGCTCTGCTCGCATCCAAGGCTGTGCCCCAGGAGAGGTTCAGCAGTCTAGAGGAGGCTCTGCCGGACACTGACGTTCTCTACATGACCCGTGTCCAGCGGGAACGCTTCGAGAGTGAGGAGGCTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGGAGGTGAGTGGCACGGGAAGGGGGCTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGAGGCTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCATGGGAAAGGGGATTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGACTTACAGGGAGGTGAGTGGCACGGGAAAGGGGTTTACAGGGAGGGAGGTGAGTGGCACGGGAAAGGGGATTTACAGGGAGGTGAGTGGCACGGGAAAGGGGTTACAGGGAGGTGAGTGGCACGGGAAAGGGGGTTTACAGGGAGGTGAGTGGCACGGGAAGGGGGTTTACAGGGAGGTGAGTGGCACGGGAAAGGGGGTTTACAGGGAGGTGAGTGGCACAGGAAAGGAGGCTTACAGGGAGTGTTGTGGTCACTACATAGTGACCCCCCATCTGATGACCAGGGCCAAGCGCAGGATGGTGGTCATGCACCCCCTGCCCCGGGTGGATGAGATCAGTCCGAACTTTGACACAGATCCGAGAGCAGCGTACTTCCGTCAGGCCGAGTGCGGCATGTATGTACGCATGGCCGTCCTCGCCACCGTGCTGGGGAAATGCTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00185	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF01979	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF02142	MGS	MGS-like domain	Domain	Interproscan
PF02729	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002195	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR006131	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR006132	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR006680	Domain	Amidohydrolase-related	Interproscan
IPR011059	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR011607	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR036901	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR036914	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45753	ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0016597	Molecular Function	amino acid binding	Interproscan
GO:0016743	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016812	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-