Gene detail

Detailed information of KAK2175242.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2175242.1	UNCHARACTERIZED	ctg739_pilon	316022	328705	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2175242.1

ATGTGGGAGGATACGTACGTGGATGCAACGAAGAGCTCGCAGTTGGGTGTTTTGGGAAGCTCTGTCGAGACTGGACAGGAAAACTTTGACGAGCCAAAAGTTTATTCTGGAGTCAATGTGTCACGGTCGAATAACAGGAGAGACACAAGAGCAGATTTCACATGGGAGGCGTCAAATCCCAAGAAGCTTTTTGTGAACAACATCAGTTATAGAAGCCGTACGAAGGAAGTTTGGGACTTCTTTGAAAAGTTTGGACCAGTGGAACACTTCCAGCTAGTGAGAGACAAAAATAACAGGCCAAAGGGGACTGGCTTTGTCACATTTAAGAATGTGGAGACTGTTGCGAAAGTGCTGGGCTTGGCAGAAGAAGATCTGACATTGCGATACAGGGTGCTTTTTGTCCAGCCGGCTGGGTACTGGAGGGCGCAGACAACAGAAAGTGTCGCAGCTGAGCATCAGAACAAATCGCAGTGTTCAACTTTGATCTCCGTTATTGTCATCACACAGACTGAGGGAGAAGTAGAAGAAGAAGAAGTAGAAGATAATGGCCTCATGCATATTCATGACCTCAATGATGATGTCATGATGCGAGTGTTTGGATGTCTCCATCTGAGAGAAAGAATACAATCTGAGAGAGTTTGTAAGAGATGGCGCAACATCTCACACCTGTACTGGAGAACCATGGAACATCTGAAGTTTGACAGTTTCTTTGTTGGCTTTGGAGCTCTCACAGACAGAGGGCTCTGCAATCTGTTGAAGCGGGGTTCGCAATCCCTCAAATCACTCGACCTGTCATTGGCATCGCGCCAATTGGCAGATGGCGCTCTAGCTGCAATAGGTCGCCACTGCCCCAGTCTGGTACGTCTGAATGCGGCCGGCATGTCGGCTACAAACAGGGGCATCAAACAGTTCACAGAAACAAAGCCTCAAATCCAGTGGATTAGTCTGCGTGATTGCCACAACATCGGTGAAGATGGTTTGTGGTGGCTGTTCCACCGATGTAAAGAACTCAAGTACATCGACTTGACTGCAAACAAGAGGTTTGTAGGAAAGTGTCTGCACATGCTCAGTAGCAACGTTGAGACTCTGATTCTCAATTGCTGTACCAAGTTGCAGGACCGAGTTGTGGACAAGATCACCCTGCGGTGCCCTGCACTGATGGAGCTCCAACTGAACGAGTGCACAACCCTGACTGACCACTGCCTCACGGTCCTTCCGCAGCACTGTCACTCCCTGGCAGTGGTCCACTTGTGCGGTGTATTCCATAAAATTACTTCTGTTGGACTACGGGAACTCGGAAAAATTGAGTCTCTTCAGGAGTTGTATCTCAGTAACAACCTCGCTGTTGACGACAATGTGCTTGCTGCCCTGGGGCAGGGTTGTAAGAAACTGAGGATACTGGATCTGACAAGCTGTCACCGTGGTGTCACCGACACTGGCTTGGTGTCACTGTCACGGTGTCACATGCTGCAAGACCTCAGTCTCAGTTACCTACACAAGATAACAGACACAGGGTTGGAAGCTGTTGTTCACACGAGTAGACTGACTCGACTGATTGCGAGATGTTGTGGAGGTATCACTGACTCAGTGCTGCACCTGTTGAGTGTGACCTGCTTTGACCTCAGCATTCTTGACCTCAGTGGTAATCAGCAGGTCACCACCGTGACCCTCCATGCCTTCCTGGGGGCAGCAGCCATCGCTCCAGAGAGAAACCTCACCCTCTACATTGGGGGCAAGTGGACAAACATTATATCTGATGATGTCGTTGTGCCAGACAACGTCACCCTCCACCTCAGAGACGTCAGTACACATCACTTCCGACAGGACCGAGACCCCATCATCAACCTAGGTTTCTATGACAGTGACGACGATGAAGATGCTGGCGTGGACTATATGGACGAATCTGACTTTCACAGTGAAGATCAAGGTGCTGCCAGCGAGAGGGTGATCTGGGCACCAAGTGAGGAGATGGCGCAGTTGTTCTTGGAGTGTGACGACCCACTGGCAGAAGAGGAATGGGACATCAGTTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00646	F-box	F-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-