Gene detail

Detailed information of KAK2169547.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2169547.1	DNA POLYMERASE I	ctg9_pilon	1630076	1658111	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2169547.1

ATGGGTAGTCAGAATGCTACTGGGGGATTTAGCTCGCTAGATGTGGCCATTTGTACAATAGAGAAGGCAAATGGACTAATTAACAGACTTCTTGAAGAAGGCAAGATGGACATGTTAGGTATGATAGTCGTGGATGAGCTTCATATGGTGGGTGATGCTAATCGGGGTTATCTCTTGGAGCTTCTCCTAACAAAGGTTAGGTTTGTTGAAGCTAAAACAAAACATGCTCAGAATATCGGAAGAAATCCACAGAAGTGTGCTGTTCAAATTATAGGAATGAGTGCCACATTACCAAATCTGGATCTGTTATCCAGATGGTTGAACGCTGAACTCTATCACACAGAATTCAGACCTGTGTCACTTGTTGAGATGATGAAGATTGGCAATGCCTTGTATAATGTGAATGGAATGAAGATCCGTGATCTGGATCCCTTGACTATGTACAAAGGTGATGAGGATGGTGTGATTACCATGTGTTTGGAGGTGATCCGGACTGGTCACTCAGTGCTGATTTTTTGTCCAACAAAGAGTTGGTGTGAGAAGTTGTGTGACTCAATAGCAAGAGTGTTTTATGGTCTACGACATGGCAAGGCTGAACAACAGACAGATGGCTTTGTCAAGGCCTCCACTCTGCTGGCTCCAAAGTTAAACGAAGCAGCATTAAAGGATGTCATAGAACAGTTAAAAAGAACACCAGTTGGTTTAGATAATGTACTAGCGAGAGTTGTACCGCAAGGTGTTGCGTATCATCATGCTGGTCTGACATTTGATGAACGTGATGTCATAGAAGGTGCATTTCGTCAGTTAGCCATACGTGTGTTAGTGGCAACATCCACATTGTCATCTGGAGTCAACCTGCCAGCACGCCGTGTCATCATCAGGACACCAATATTTAACAGGAATGTCATCGACACGTTAACATACAAACAGATGGTTGGTCGTGCAGGGAGGAAAGGAATTGATACTTATGGTGAAAGTATTTTAATATGTAAACTGACTGAAAGAATCAAAGCGGAGAAGTTGATGAAGTCTGATCTCACTCCAGTACGAAGTTGTCTTGTTAAGTCAGAGTCTGATTCTCTCAGCTCTAGCATGAAGAGGGCAATATTAGAGGTTATAGTCAGTGGTGTAGCATCAACACCACAACAAGTGGAAAATTATGCAAAATGTACACTACTTGCTGCTTCTATGGAAATGGTTTGGGCCATAGATATAAACAATGAAGATCCGATCAGCAGGAGAACAGGAGTGATAGAGAAGTGTATTGACTTCCTTACAGACAGTGAGCTGATATCACTGAGGAAATGTCTTAATGATGATGGTGTGATGGCGGAGCAGTATACAGCCACTAATCTCGGGTCTGCTGTCTTAGCGTCATCTTTGGCTCCAGATGAAGGTCTGGCCGTGTTCACAGAGTTACAGAAAGCTAGGAGATGTTTTGTCCTCGAAAATGATTTACATATTATATACTTGGTCACACCAATCTACATGGCTGATCAGTGGGGGACATTAGACTGGTACAAGTACCTCTGTTACTGGGAGCAACTTTCTTCGGGAATGAAGCGTGTTGCAGAACTAGTCGGTGTTTCTGAGAGCTTTCTTAGTCGTGCAGTACAGGGACGCATCCCAACTAAAACAGCACAGCAAATGAGGACATTGAGAATCCATAAACGCTTCTACACAGCACTCGTATTACATGACTTGGTTAATGAACGTCCATTGCCTGAAGTGGCTAACAAATATGGCTGTGCTCGTGGAATGTTACAGTCATTGCAACAAGGGGCTGCAACATTTGCTGGTATGGTGACTGTGTTTTGTAATCGTCTTGGTTGGACATCCCTCGAGTTACTTCTGGATCAGTTCCAGAGTCGTCTAACATTCGGTGTACAGCGGGAGCTTGTTGATTTGGTGCGGATCACAATACTGAATGCTCAGCGAGCACGAGCATTGTATAATGGAGGTTTTCAAACTGTGGCAGCTGTCAGTAATGCTGATCCAGTGCTTGTAGAGAAACTGCTAAAAACAGCTTTGCCATTTCAGAGCAAAAAGCCAGGTGATGGTGAGACTGATTGGGATGCTGCTGAACGACAGAAGTCTAGATGTATTTGGGTGGCAGGACAGAAGGCACTAACAGAATGCGAGGCAGCCATCCTCATTATAGAGGAAGCCAAACAGCTGCTAAAAGTTGATTTGGAGCAGATGGGGGTACAGTGGATACGACAAGAAACAACAGGATCTAACCAACCATCCAGTACAAACAGATCCGGAACTCAGAGAGCTTCCAGTAAAGAAAAACATCGGGGTTGTAAAAACAGTAATGTGTCAACTGGCTCTCATGATTCTGTACTCAGTCCACCACCTACCTTGAACCTGTCAAAAACAGGGAAGTTAGAGACTTCAGTTGCCAGTCAGGATTCTCAAAAATCTACTGAAGGAAATGTCTTCGTAAAACCTGTAAAACCAAGGTTTGGCAGGAGAGCTTCTACCGGAGTGACTCTTAGTGAAAATACTGTTCTTTCTGGCTCCCAGCATTGTGTCAGTGGTAAAAGTCAAGCAGTTACTGATTCCAAGAATAATGCATGTCGTAATGACATGATGCAGGTAAGGAGGCTTTTAGGAGAACAAGAGGAGATGGCTTCTAGATTGGTAGATAAGTCTGATGCTGGCTTTCGTTGTTCGGATAGCGTCAAGAAATCATCACATCAGTGTGCGACGTATGCTGTGTCGAAGCATTTGGAGCATGATGTCAGTTCGTTGGATGACAGTAAATGCTCGGAGCACAAAGTGGCTGACATCAGTGAACTTACCGACAGCAAGTTAATACGGCTAGTGTCTGCAGCCAGCAAATCTAACATAACATGGCCATCAACTCATAATGGGTCAGACATCAATGCAGTTGTTGCTGATGTTTGTCAGTCACAGTCAAATGTATCAGCAGAGCTGTATTCTGAGCCTCTTGAACCTATTCAGGGTGAACCCGCCGTTGAGAAGATGACGGAGAAAGAAGTTGATCCAAAAATGGGTTTACTGAATAGGAAGGTTGATTACAACAGGGGTAATGTGTCTGACGAGTTATATACTGAACCGTTGTGTCAAAACATACAGTCAAACTCCTGTAACATGACGAATGACAGCTTATTTCTGGATACACAGGTTCTTCATTTGATCGCAAACTTCTCTTCTAGTCCTCACCATGGCAGTAGTTATAATGAAGCCATTGGTGAGTCTGATAGGTTGACTGTTGTAAGTGAAGGCTGTGACATTGATTTACATAGAGACGATGTGGCAAATAGTGCGGCCATGATAAATAATTCACCTGATAATGGGACTGTAGATGGGACTCCATTGATTTACTCAGATCCAGAACAGTACTCTATGATGGACGAGTATATGAATGAGTACTGTACTCAGGTTACGGCATGTTGTAATTTGGATGTTCACCCATCCACCAGCAGAAAGAATTGTGATCAGTTATATGTCAGTATTCACAAAGAAGATAATTATCCTAAAATGTGTGGTCTCTATCAGGATCATCAGAATGGAAATGTAAAAAAGGGTTCACTATTGGATTTATCACCCGCTAATAATGTGGCTGATGTTTCAGGATTAAAAGATGAAGACATACTCTGTGAAAGCTATTTGAATAAAGTAACAGATGGTCAGCAAACGGAAGAGCTGTTACCGGCTAGCTGTTATGATAGACTGGTGCCACCCACTTATGATAATGAATGCCTTGTTGATGATGAACAAACCAAGCCACTGTCACAAAGCACTCGCAGTCAGCAATTTATGGGGACTGCAGGAAATTATACTAACTTAAGGGAAGATTTGGAAATTGCTGAGAATATGGATGAAGATTCATTTTTCTGCTTGATGCCAAAATGCACTGTTCATGACAAGGAGAACTTGGAAACGAATGTCTCACAATGCCTGAAACGGGACAGCCCAGATCTTCTCTGTGTCAAGAATAAACTCTCTGTTCAAAATAACCCTGGGTTCACATCACTGACTTTGTCGATGTTACAGAAAGAACTGGATTCAGAAATAGATCTTTATATACCAGAGAAGAGCTGTTCTAGTTGTGGAGATCAGAATTGTGGAGATCATTCTGTCCAGTTTAGTCCTGAGACAACTGCCTTGCTGGATGTGATCTGTCAGAATGCTACACCTGAGATGTTAAGCAAGAAACCTTTAAGACGATCAACCAGACGTTTGAGTAAACAGAAAATATCTTCACCTAACACTCTGGCTGTGACATCATCCATCACACCATCAATTGCCTCCATCGAGAAAGCTAATAAAAGAAACACTCGGATGAAGAACATAAATCCTCCCCCAAAAGTGAGAAAATCATCAAAGCCCCTGAACGAATCACACAATGAGAGTGGGGGCAGTGATTGTGTGCCACCCACACCACCTCCAACAGAAGGTGCCTGTGATGGGTCAAAGGTGAGCACTCCAAAACGATTACTTGGTGGTGTAGTTAGCACTCCACAGAGGAAGAGGAAATCAGTGAAGGACAAGGAACAGTCTACATCCCGACACAGAACTGACTGTCAGCATTCATCTGTTGACAAAACACCAAATGTATCTGTACATAAATCCAGACAGTCTCGACGTGTTGATACTGGGAAATGTCCTATTACAGCTGTACAGTCAGATAATGGGCAACAGGATCCTGGAGAATCTCTACCGTTTTCTTTTTCATTACCTATGACTAATGAATCATTTACCATCATAGATGTGGCTTCCAGTAAAATGTTGTTCGAGCATTTTATTGAAGAATGGACAACCAAATCAGTTTATGCTTTGGCTATTGCCTGTGAAAGGATCCAACCAGCTAGCGATGATCCCATAATTGGTGGAAACTTTAAAAAAGCATCCAAAAAGCAGTACGTGACTCCTGACGGACTTTGTGTGGAGGGCACTGATCTGATAATAACAGGATTAGCTGTCAGCTGGAATAACAGAGATGCTTATTTCTTGGCACTTACTAAAAACAGCAATATTTGTGATCCAAATGATAGCTTAAGTCCTCCACCAATTGCCCAAGATCTTCCTGTGTCCTTGCGTCTTTCCATGGTGAAGCCAGTCTTGGAATCTATCACTAGTTGCCAGGGAGAAGATCATGTATGTTTAGCCTTTGACATTAAAGAACAATTGAAAATGCTGAGTAGAGGTTGTGGTATGTGGATCCATGGTGAATGTTATGATCCAAAGGTTGCTGTTTGGTTATTGGATCCTGGAGATAGTGAGAAAAATCTTCACAGACTAGTAAACAATTATATACCAGAAGATGGACACCTACTGGAAGATCTAGGAGGAGGTATTGGGCTTGGCAGTGTTGCCTTAAATCCCGACAATCCTGGATCAGGTCGTGTACGTTCCTGTGTGGAGGTTGTTCTAGTCAGAAATCTAATGATTGTACTGGAGACTAGATTATGCGATGCTTCTCTGTGGTCAGCTTATAAAGAGACTGAGATGCCATCCCTGCTGTCACTCACTCGTATGGAGCTTAATGGGTTTGGGTTTAGCAAAGATCAGTGTGAGATCCAGAAAAAAGTTCTGCAGACTAAGATGGCTAACCTTGAAGAAGAAGCTTATAAACTTGCTGGCCACCCATTCTCCCTGACATCAACAGATGACGTCTCTCAGGTGTTGTTTATTGAGTTACATCTGCCACCTAGTGGTGACATCTCGGCACCTGCCATCAAAAAAAGACTCGGTCCAAGAAGGAAAGTCCGTGGAAGTCAGTTCTCTACATCAAAAGACATCTTGGATAAGCTAAAAGTCATTCATCCTCTGCCTGGAGTTATCCTGGAATGGAGGCGCCTGAATGCTGTCCTGACTAAAGTTGTCTTCCCTTATCAGAGAGAATGTGTTTATAACAAACGTCTATCAATGAATCGTGTCCATGGAGTGACACAGTTCCACACAGCGACTGGCCGTGTATCCATGTCTGAACCCAATATACAGAATATTCCAAGAAATTTTGACATAGATGTAGATGGTTTGGTGTTTACCTTCAGTTAA

Transcript

Protein

KAK2169547.1

MGSQNATGGFSSLDVAICTIEKANGLINRLLEEGKMDMLGMIVVDELHMVGDANRGYLLELLLTKVRFVEAKTKHAQNIGRNPQKCAVQIIGMSATLPNLDLLSRWLNAELYHTEFRPVSLVEMMKIGNALYNVNGMKIRDLDPLTMYKGDEDGVITMCLEVIRTGHSVLIFCPTKSWCEKLCDSIARVFYGLRHGKAEQQTDGFVKASTLLAPKLNEAALKDVIEQLKRTPVGLDNVLARVVPQGVAYHHAGLTFDERDVIEGAFRQLAIRVLVATSTLSSGVNLPARRVIIRTPIFNRNVIDTLTYKQMVGRAGRKGIDTYGESILICKLTERIKAEKLMKSDLTPVRSCLVKSESDSLSSSMKRAILEVIVSGVASTPQQVENYAKCTLLAASMEMVWAIDINNEDPISRRTGVIEKCIDFLTDSELISLRKCLNDDGVMAEQYTATNLGSAVLASSLAPDEGLAVFTELQKARRCFVLENDLHIIYLVTPIYMADQWGTLDWYKYLCYWEQLSSGMKRVAELVGVSESFLSRAVQGRIPTKTAQQMRTLRIHKRFYTALVLHDLVNERPLPEVANKYGCARGMLQSLQQGAATFAGMVTVFCNRLGWTSLELLLDQFQSRLTFGVQRELVDLVRITILNAQRARALYNGGFQTVAAVSNADPVLVEKLLKTALPFQSKKPGDGETDWDAAERQKSRCIWVAGQKALTECEAAILIIEEAKQLLKVDLEQMGVQWIRQETTGSNQPSSTNRSGTQRASSKEKHRGCKNSNVSTGSHDSVLSPPPTLNLSKTGKLETSVASQDSQKSTEGNVFVKPVKPRFGRRASTGVTLSENTVLSGSQHCVSGKSQAVTDSKNNACRNDMMQVRRLLGEQEEMASRLVDKSDAGFRCSDSVKKSSHQCATYAVSKHLEHDVSSLDDSKCSEHKVADISELTDSKLIRLVSAASKSNITWPSTHNGSDINAVVADVCQSQSNVSAELYSEPLEPIQGEPAVEKMTEKEVDPKMGLLNRKVDYNRGNVSDELYTEPLCQNIQSNSCNMTNDSLFLDTQVLHLIANFSSSPHHGSSYNEAIGESDRLTVVSEGCDIDLHRDDVANSAAMINNSPDNGTVDGTPLIYSDPEQYSMMDEYMNEYCTQVTACCNLDVHPSTSRKNCDQLYVSIHKEDNYPKMCGLYQDHQNGNVKKGSLLDLSPANNVADVSGLKDEDILCESYLNKVTDGQQTEELLPASCYDRLVPPTYDNECLVDDEQTKPLSQSTRSQQFMGTAGNYTNLREDLEIAENMDEDSFFCLMPKCTVHDKENLETNVSQCLKRDSPDLLCVKNKLSVQNNPGFTSLTLSMLQKELDSEIDLYIPEKSCSSCGDQNCGDHSVQFSPETTALLDVICQNATPEMLSKKPLRRSTRRLSKQKISSPNTLAVTSSITPSIASIEKANKRNTRMKNINPPPKVRKSSKPLNESHNESGGSDCVPPTPPPTEGACDGSKVSTPKRLLGGVVSTPQRKRKSVKDKEQSTSRHRTDCQHSSVDKTPNVSVHKSRQSRRVDTGKCPITAVQSDNGQQDPGESLPFSFSLPMTNESFTIIDVASSKMLFEHFIEEWTTKSVYALAIACERIQPASDDPIIGGNFKKASKKQYVTPDGLCVEGTDLIITGLAVSWNNRDAYFLALTKNSNICDPNDSLSPPPIAQDLPVSLRLSMVKPVLESITSCQGEDHVCLAFDIKEQLKMLSRGCGMWIHGECYDPKVAVWLLDPGDSEKNLHRLVNNYIPEDGHLLEDLGGGIGLGSVALNPDNPGSGRVRSCVEVVLVRNLMIVLETRLCDASLWSAYKETEMPSLLSLTRMELNGFGFSKDQCEIQKKVLQTKMANLEEEAYKLAGHPFSLTSTDDVSQVLFIELHLPPSGDISAPAIKKRLGPRRKVRGSQFSTSKDILDKLKVIHPLPGVILEWRRLNAVLTKVVFPYQRECVYNKRLSMNRVHGVTQFHTATGRVSMSEPNIQNIPRNFDIDVDGLVFTFS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00476	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF20470	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF21099	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001098	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002298	Family	DNA polymerase A	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046931	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan
IPR048960	Domain	POLQ-like, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133	DNA POLYMERASE I	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0097681	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-