Gene detail

Detailed information of KAK2168372.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2168372.1	PROTEIN STPG4	ctg17_pilon	387768	397830	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2168372.1

ATGCCCGGAGCCATGGCCACATCCCTGTCGCCCGTACCCGATTCCAGATTCAGCCCGCCCAGTACCCGGGCCAGGTCGCCGTCTCCGGATCGGACCAAGCCGAAGCCGGAGAAGTCACCCAATAAGATGAGGACGCCGGAAATGGTCACGGGTGGCTGGAAGTCACGTGCTCGGAGTAGGAATAAAAAGGAAAAGGAGGAGGAGGTGGAGCTCAGTCCGATGCAGCGACGACCCAAACCGTCAGAGGGTTACGAGGCACCTGTTTCCGGTCGTGAGAAATGGTGGAGAGATACGATAAGGGAGACTCCAATACCGGGTAGATATGAGCACAGCGACCTAGTGAGGGAGCTTCGGACGAAAAAGAATACTTATAGGTTTAAGTCAGACGGTAGAAAGATGGAAGCACAGCCTTATATAGGACGAGGCAAATATCTGCTGCCCGGAGCTTATGAACACGAAGATCTGGAGAAACGCATGGCCAAATTTTCGGAGACTTATGGCTTCAAGAACACATCTCGAGAGTCCAGAGATATGATGTTATTTGGGAAAAAAGACAAGGATATAAACGTACCACCGAACGCCTACAATGTTAACACCTACTTAGCAATACACGCCGAAAAATGTCCATCAAAACATTGGACTTTCAAATCGACTTCAGCCAGATTTCCCACAGTACAATTTAAACCAAAAGAAGGGCCCCCACCAGGTGGCTACGATTATAGACCAGCTGAGACTCTCCACACAATATCATCGAGTTTTGTATCAAGGACACCGAGATTTTCTACATCCCATACGAAAACACCGGGACCGGGTAGCTATGATCGAATGTATAAACCCATGACCGAAACCATAACGAAGATGGGAAGACTTCACGGCATCTTCCTTACGCCAAGATTGGATAGTCGAGGAAGATTGATAAAACGAAGGGGACAACGTTTATTCCACGTTGATTGGACAACTGGTTTCCTTTTGGTCACTTTGACGTTTTCGAGTTCGACCCGCGATATCATGGCCAACGAGGAAGTTGAAGATCCCGTCCATTGCGAAGCTTGTCTCTGTACGAACACGTCGATCAAACAGTTACCGTGTAAACACGCCTTCTGTATGACATGTCTGTGTTTGAATCGAGTATCGATGACCGCGCAGCCGCTGACCAGAAATATCACATGTCCCATGTGCGACGAAGAACACTATCTGCCCGAGGGGGGAATCCCAGCTTTGCCGACCTTTAAAACCGTTGGCAAGATGACCTGTGCCTTGAAGGAGTACCAACGGCAGACATCTCGTGGTACGCTGCAGTGTACGCTATGTTCGGATGGCTCGCCGTCCGAGAAGAAACCCGCTAAACTTTACTGCATCACGTGCTACGAACTGCTCTGCCATCGGTGCGCAGGCTACCACAACGCGATGCCCACGTCACGAGAACACGTGACCGTACCGATTGATGACGATACAACCGATGCGTTGTTCTGTTTGGAACACGGAACGCGTCTCGTACGGAGTTTCTGCATGGATGACGTCAGGCTGATTTGCAACGTCTGTGCGCAGGCGTCGCACAAGGATCATGTGCTCGTCGATCTGGTGAGAGGCGATCATTCGGTCAGTGGCGACCGGGAGACGATATACCGGAGTCTAGATCGAATATTTCGGGATCTGCAAGCGAAACGGGAGAGGCTAGAAAATTTTAAGAAACGCAGCAAGGAGAAACTGATGCAGACAAAAAAGGAGATCACGGTTCAATTATGGCATCAAATGGAAATTATACAACGACGGCTTCAGGATCAGGAACGGTTACTACACGAACAAATCGACGAGCAATACCAAACGATAGAGAAACACTGCTCGGAGGTCGGCAAACAGATAGAAAAGGCCATTGGTTCGGTGACCAAGCTCCAGATGAGCGCCAACGCGATCCTGAAGCCATTCGGAGATGTCGCCGAAATCACATCAGCGAAATTTCCAGTCGAGTGGTTCCAGGATCGTTTTACGAAAATCCCGATGCCGTCAGCGGATCCTGATTGGTGCTTATCTGTCGTTGGCAGGTTTAACCCGAGCAACGAGATCGACCTTGGTCACGTCGACAAAATGGCAATGGCGAAGTCCGGTTTCGACGACCGTGACTCATTCCAAGTTGAGCCGCAACTTCTTTGGGAACTGAACGCCGATGACGTAGTCGACGTTAGCTTCATCAACGACAGATGTCCCGGCATCGTTTATAGCAGTTTTAAGTCGACGTCAGCTGGTGGCGAGTTCGTCATCAAGAAACTTGGCGATGCCGGGACGTCGGTTGATCTGACAGTACCAATACCGAGTTCTTCGGAGCAGTTCTGTGCCATCGGGGCGAACTTCCTCGGCACACAGTGCGTGGTGTTGACCAAGGGAACGAGAGGTTCGTGGGACGTCGTGATCATGCAGAAGGACACGGTCACGTGCAGCACGCTCAGCAACAACATCCCACCGAAGGGCGATCCAGTGGCCATAGCCATCAACGCGTCCGGTGACATAGTCGTAGCCACTCTCGAGAATCCGGAACGGAAGCGTGGATCAACGTCGCTGCGATGCTACCACCGAGACGGCTACGTTCTCTGGTGTAGAACGACTACGCCAGGCGACGTCCGTTCGCAAGGCAACTCAACCCGGCTCAACACCCCGTGGTCGATCTGCGTGGATAGTCTGGATAGAATCCTAGTTGCAGATGCCGCACAAGGATGTGTTAAGATTTACAACAATCTCGGGATCCATCTGGAAACCTTTTATCCCGATTTTAAGAGGGGAGGACGGCCCGTGGCTGTGTGTACGAACGAGTTGGCCGAAATCTATGTCGCCTTCTACGACGATCGGTTAGTGTCCAAGTTTACAGCCAACGGCCAGTTTATGCGGCATATCCTGAAAACGGGATCTCGGCCAAAAGCGATCGGGATCGATAGCGATAGACTTGTTGTGGCCACATCAAGGGCGTTACGACTCTATCAGCTTGGAGGAGAGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35678	PROTEIN STPG4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001939	Cellular Component	female pronucleus	Interproscan
GO:0001940	Cellular Component	male pronucleus	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0042585	Cellular Component	germinal vesicle	Interproscan
GO:0044727	Biological Process	epigenetic programing of male pronucleus	Interproscan
GO:1901537	Biological Process	obsolete positive regulation of DNA demethylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-