Detailed information of KAK2167489.1 in Paralvinella palmiformis Gene info
Gene IDAnnotationContigStartEndStrand
KAK2167489.1ZINC FINGER, ZZ TYPEctg27_pilon797735826642+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF04494TFIID_NTD2WD40 associated region in TFIID subunit, NTD2 domainFamilyInterproscan
PF05178Kri1KRI1-like familyFamilyInterproscan
PF12936Kri1_CKRI1-like family C-terminalFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR007582DomainTFIID subunit TAF5, NTD2 domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR018034FamilyKRR1 interacting protein 1Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR024626DomainKri1-like, C-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR037264Homologous_superfamilyTFIID subunit TAF5, NTD2 domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR14490ZINC FINGER, ZZ TYPEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000447Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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