Gene detail

Detailed information of KAK2165050.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2165050.1	TRANSCRIPTION ELONGATION FACTOR SPT6	ctg55_pilon	45131	52821	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2165050.1

ATGTGTCGAATGGGACCCAAAGTGTTCATCAATTGTGCTGGGTTTATCAAGATTGACACTAGTGCTTTAGGAGACAGTACTGAAGCTTATGTAGAGGTGCTCGATGGATCTAGAGTTCATCCTGAGACATATGACTGGGCAAGAAAGATGGCTGTTGATGCCCTTGAGTATGACGACACAGCTGAAGATGCTAATCCAGCCGGTGCTCTGGAAGAGATCTTGGAAAGTCCAGAGCGACTCCGAGATCTTGATCTTGATGCTTTTGCTGTAGAATTGGAAAAACAAGGTTATGGAAACAGACAGATTACCTTATATGATATTCGTGCCGAGTTAAATCACAGATACAAAGACTTGAGAACTCCATATCAATCTCCAACTTCCGAGGAGAAGTTTAACATGTTGACAAAAGAAACGCCTGCTACATTTCATATTGGTAAACTAATTATGTGTGCAGTGACAGGTATAGCCCATAAAAGGCCACGAGGTGAACAACTTGATGAAGCTAATCCTTACAGAAATGATGAAACCGGCCTTTGGCAGTGTCCCTTCTGTCAGAAAAATGACTTCCCTGAACTCAGTGAGGTTTGGAACCACTTTGATGCTGGTGAGTGTAAAGGGCAGCCAGTAGGAGTTAAGACCAGGTTGGATAATGGTGTTTCTGGATTCATTCCACTCAGTGCACTTAGCGATAAACGGGTTGAAGATCCAGAACAACGTGTCCAGGTCAGCATGACGTTGCACTGCAGAATTACAAAGATAGACATAGAACGATACCAGGTTGAATTAACATCTAAAACGTCAGATCTGATTGATAAAGAAGGAAAGTGGAAGCTACAGAAGGATCTGTATTATGATTTTGAACATGAAGAAAGTGACAAGAAAAGAGAGGCCGATTTAAAACAGAAGCAAGCAAGGCAGACCTACGTTAAGCGCGTTATTGCCCATCCATCTTTCCACAATATAGACTACAAAAGTACGATAAAACTTATGACTAATATGGAACCCGGAGAGGTGGTTATTAGGCCAAGTAGTAAGGGTACTGATCATCTGACTGCTACCTGGAAAGTTACTGATTCTATCTTACAACATATAGATATTAGAGAAGAAGGCAAAGGAAATGCGTTTAGTCTGGGCAAGTCACTCTGGATACAGAATGAGGAATTTGAAGATCTTGATGAAATTATTGCCCGTCACATTCAGCCAATGGCGGCCTTTGTTCGTGATATTCTTAGTTATAAATACCACAAAGAAAGTGACGGTGGCAATCGTGAGGTTATGGAAAAGATCTGTATTGAAGAAAAGAAAAAAGCACCTAGCAAAATACCATACTTTTTCACGGCCAGCAAAGAGTTTCCTGGAAAATTTATGTTGTCTTACCTGCCACGTAAGACTGTCAGGCATGAATTCGTTACCGTTACACCAGATGGAATTCGCTACAGGCAACAGATATTCACATCATTAAATTCTCTAGTCAAGTGGTTCAAGGAACACTTCAGAGATCCTATCCCAGGTACACCTGCTAGCATGAAAACACCAATGGGTCAGGCAGGCATTGGTGCTACACCAAATATTAACCTGCAGAACGTTGACGTGGCCACTATTCAGCGTGCTGCAGCCGGCCTTCCCAGCAGTGTATATAACTCACTGGCTCAAGTTGCTGGGCAGACTCCGTTTGGAGGTTTCAACCAGTTCCAGCCTACTCCAATGTTGACACCGATGATGACACCAGCTCAACAACAGCCATTTGTGACGCCAGCCGGCATTGGAACGCCAATGACTAGTGCGACCGGGGGAATAACTGGACAGTATGGTGGACACAGTAATTGGCAAGGCAGCACACCAAGGGTCCAGCCTGGTACTACACCGCGACAATATGCCGGCACCACACCACGTCCTCTGCCTGGCCAGGTGACGCCACGTCCTGGTCAGGCAACGCCGAGACAGCAGCCAGGTCCAACCACACCGAGGCATTACTCTGCAGCAGCTAGCCCCAGACATGGCACATTAACCCCACGCCAGTATGTTGGAAGCTCCACACCTACAAGTGGCCAAACGCCTAGACAAAATCGGGGAGCTGCAGCCGGGGTCGGTACAAGTGCATCTCAGGACTGGGGTAAAATGGCCAAGATGTGGGCCAAAGAAAGGTTGGCCGCTGAACAAGGGGGCACAGCCTACGACAACCCTGCTATCAAGCGCTCCAGAAGAACTCCTCGGTCGGAACAGAGCCCTCGGGTTGCTACTCCAAGGGGGGATGCCACACCGTTGTTTGATGAAAGATAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF14633	SH2_2	SH2 domain	Domain	Interproscan
PF17674	HHH_9	HHH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR017072	Family	Transcription elongation factor Spt6	Interproscan
IPR035018	Domain	Spt6, SH2 domain, C terminus	Interproscan
IPR035019	Domain	Spt6, SH2 domain, N terminus	Interproscan
IPR035420	Domain	Spt6, SH2 domain	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR041692	Domain	HHH domain 9	Interproscan
IPR042066	Homologous_superfamily	Spt6, Death-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10145	TRANSCRIPTION ELONGATION FACTOR SPT6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023	Cellular Component	transcription elongation factor complex	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0034728	Biological Process	nucleosome organization	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140673	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-