Gene detail

Detailed information of KAK2165030.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2165030.1	UNCHARACTERIZED	ctg1388_pilon	24987	47980	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2165030.1

ATGGGACACAAAACTGGAAAGGGACTTGGAAAATATGGCCAAGGACGGGTGAATATTGTGGAGGCGTCGAAGCAGAGAGGAAGACGAGGACTTGGGATGACAGTGAGAGGATTTGAGCCGTCAGATCTGGAGTGGGACACTGACAAAGAAGTCGTTTCAGCAGAAGAGGCAGTTGATTGGATAGACACCTGTACAGGTGCTGTACCAAAACTGGACGAAATGCAGAACTGGGTCAAGACTGGACCGAAGAAGCTGGTATTGGACGGAGAATGTGAATTTTGCAGTGAAGATTTACTTATAAATATCCTTAAGAGCAAGTCTGTGTTTGACAATCTGGAACCAGAAGAAATGAGACGTGCACGAACAAGATCAAATGCCTTTGAGACAATCAGAGGTGTCTTCTTCCTGAATAGAGCAGCTATGAAGATGGCCAACATGGATGCTGTAGTTGACTTCATGTTCACAAACCCCAGAGATACACAAGGGAAGCCCGTCGTTGGTCCAAACGAACTGTTCTACTTCGGTGATGTTTGCGCTGGCCCAGGAGGGTTCTCCGAATATGTTCTCTGGAGGAAGAAAAGAGGGGATGCAAAGGGATTTGGCTTTACCCTAAAAGGGGCGTGTGACTTCAAGTTGGAGGATTTCTTTGCAGCTCCCAGTGAAATGTTTGAGCCATATTATGGTAAGAACGGTTTAGAAGGAGACGGAGACATCTACATACCAGACAACCTGGTGGCCTTGAGAGACTTCATACTGCAGGGCACGGACGGGCTCGGTCTCCACCTCCTGATGGCTGATGGGGGGTTCTCGGTGGAGGGCCAAGAGAACATCCAGGAGATCCTGTCCAAGCGGCTCTATCTGTGTCAGTTCCTTGCTGCTCTCATGAACCTACGACCAGGTGGCCACTTTGTGTGTAAGTTATTTGACATCTTCACACAGTTCAGTGTCGGCCTCGTCTACCTGATGTATCGAGCGTTTGACCATGTGTCCATCTTCAAACCAGTGACCAGTCGGCCAGCCAATTCAGAACGATACATCATGTGTAGGGGGTTGAGGGCTGACGCTGGCCCCATCAGGGACTACATGTTCAACCTGAACTTGAAGTTTGAGAAACTTGGCATCATGTCCAGGGAGGACATAGTCACAGTCGTTCCCCTTGAGTTACTACACGGTGACGACAACTTCTTTGAGTACATATTTACGTCCAATCAACGACTGGGTCAGACACAGATGATAGCACTGTCCAAAATCCAGGCCTTCTGTAAGAACAGCAATCTGCACGACCCCCGCCAGGCTGACATGAGGGAGAAGTGTCTGAAACTGTGGCAGATTCCCGATGAAGTGCGAACGGCCCCAGACAGGACAGTATCAGCCCAAGCGAGATTCAACAAACTAACAGAAATGTCCAGTGCAGACTTCTGGACACCCCCCACAAAGCTTACCCTCTGTGACTTGGAGACAAAGGTCAGGAGTGTCTTTGACTACCGCTGTCAACTCGGGGGTTCCAAACAACGCTTCCTGCTTCTCAGTCTCGGGAAAACATCAATCTACCGATGGGATCCGCTCACCCACAATAAGTGGGTCAAACTGACGAAGCTGAATGAGTTTCTGACAGAACTGCCCAGGGACACACTAGTGGAGGGAGAGATCGTCCAGGAACTCAGGGGAGAGGGCAAAGGTCAACTAAAGGTCAACAGTCTGCACATCCTGGACGCTATGTTCCTGTCGGGGGAAGATGTCACGAGTCTCCACTTCAATGACAGAATTGAACGTTTGAAGAAGTTTGTAAAGGCAATCACACGACCTTCAAGAAGTGACCTTGCCCCAGTTCGGGTCAAGGACGTTTACAGGTTTGAAGAGATCGTCCAAATGTTTGAACGACTCAGCATGAGGCGAGTGAAGGGGTCGAGTCAGCCGAAACTCTGCTACTGTCTACAGCGACATGTGTGTGAAGACCAGCCGCGCTACATCACTCCGACCGGAGTCTACTTTATCAAGACTGTCAGAGATCCTTGGATGATGGGACAGAGCAAGAAGACCGGGATGAAGTATTTCTACCACACACTAACACGAGAAGCTGTCCATAAAGTTCCACTGGATTCCATCGCTTCATTCCAGTCATGCCAGAAGAGTCGGCTGTTGTGGGAGTGGGACTCTAGCGTGAAGCTGCTGCCGGAACAGATGTACTTCGACAGCAAGAAGCTGTCGCGAGAACACGTTCTGGACTTTGTCGCGAAGCACACGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585	G-patch	G-patch domain	Family	Interproscan
PF01728	FtsJ	FtsJ-like methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR002877	Domain	Ribosomal RNA methyltransferase, FtsJ domain	Interproscan
IPR025816	Domain	RrmJ-type ribose 2-O-methyltransferase domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050851	Family	mRNA Cap 2'-O-Ribose Methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16121	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004483	Molecular Function	mRNA (nucleoside-2'-O-)-methyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006370	Biological Process	7-methylguanosine mRNA capping	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0097309	Biological Process	obsolete cap1 mRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-