Gene detail

Detailed information of KAK2162466.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2162466.1	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	ctg98_pilon	488938	502929	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2162466.1

ATGCCATCATCGTGTCCGGTGTGTGGCAGTGCCGACTTTGACTGTGACAGCGGACTCTACTTCTGTTCTGGCTGTGGCACACAATCTCAGCAATTTGTGGTAGAAGAATGTGAGCGCGACTATGAAGCACATACAACATCGGTGACTGGTGAGAAGTTTGATGGCACCAGACAGGACAAGGACACTGAAGATAAACAAGATGAATCAACGTCTCGACCTTGGGATGTAACCGAGGGTTTGACCATACTGCTCAGACATCAGGTGGCAGCACTGATAAAGATGGGTGCCGCACCCGAGCTGAAGGATGTAGTTTTCAAGCTGTGGGCATCATATCTGAAAAAGATTGGTAAAGGTTTTGGCAACCTAACCCAGAAGACAGTTTCCACATTTGTACGGGCCGATTTCGTGCCGACGTTTGATCAGCCGAAACCGGCAAGCATTCTGCTCGTCAATCAACAGCTGAAGAAGAAACAGTCGCACTCCATTGATGACCTTCAAGCAATGCGTAAGACGTTCGGAGGTGAGACTTTTTATGATCCCGAGGATGATCCCTTTAGTCTGCAGAAGCACGAACTGGATGAGTTAGACATGTATGCTGAGGAAAGGGAACAGTGGTTAAAGAAACTGAAGTCAGAACAGAAAGTAAGCGAAGTTGCTTATTGTCGTACTCAGAAGTACCACGGCCAGATTATAGTCCTACATGTTACGATGTCACTCTGCTATATTGCTCTACAGTACACCAACAGCTTTGTGACATTGTTTGACATTTTAAAAGCAGTAAAAGCTGGATTGATGCCATTTGGTGATGGACCGGATCTGTTTCCATCAAATATGAAACTTGTTGGAAAGGATTGGTTATACTTTTGTACACCATGTACTCCAAGCATGCCACTATTTTATCGTACTACAAAATCGATCAGTTCATTACTTGGCGTACTACCATTACCTGTTCCTGACATGAAGCTGTTTACTCTGAGATACCTACAGGATATGAATCTGCCGGTTGGCCTTCATGGTTTGATCCGAAGCTTATTGATGAGACGAGAGCCACGCCTCGAGAAACCTGACCGCGGTTTATTACCAAAGAGCGAGCTGTTGGCCGTGGCGTATGTTATTGTGGCTGTGAAGCTGGTGTTTGGTCTTAACGATGATATGGAAGAGCGAGCATCTGCCTTTACGCGAGAAGTGGCAAAACTGCTTGACCCCACCTCAGGCATGAAGCTTTTTGATTGGTCCGACTGGGTTGTCGAGGACTGTAGAAGGCGGAGTTTTTCATCTGTGTTGCCCAATCACTGGAAAGATGTTCGTACGTCAGTTGACACAGACAGTTATTGTAGAGCGTTCAGCAAATACTGCAGTCTGAAATCAGATAAATACAAGGAACAAGCTAATGCGCCAGAAAACAGTAACAACATCACAGGCATCTTCAAACAAATGCGTTCACAGCTTGACAGTATTGGCAACTGTTCAGCGAATGATCAATCTCCATCAGCTCCCCCTAGTGATTGCGACAGTGTTCAGGATATGTTTGATGGTATGGCTAGTCAGAACGATTCATGCCGCCAGGATATCGGTGAAAGGCCACAGGCAGACATAAACAAATCACACGTGAATGACCTCGGCAGCGAAACTCATCAGGATTACACACAGCATTTGGTGATGCATCTCACAGACTGGGAGAACTTCGTCGATCTGGTCATTCGCCGGTCAACGTCTGACCAGTCCAGTGACCAGGCCACAGCTGCCAGTTCAAGGTGCGAGGATGTTGTCGATGAGACACTGCATTCGTGTTTGGAGGAGGTATCCAAACGGACCATTCACGCTTGGACGGATTACGTCTTCTACAAATTTCCATGCGATCTGAAACATTGCCACAAGTCGTACATTCACTTGCTCGAAGCAGCCGAGTTATGCATAGGCTATAACAAGAATGTGATACACACGTCTGTTCAGTCTCTGGAATTGGTGTATATCAGCGGAGAAGACAAACAACTGAGGAGTGAACTTTCCAAAGCTGCGTCATTTATACATCTTTATTTCTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20645	Rrn7_cyclin_C	Rrn7/TAF1B, C-terminal cyclin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033599	Family	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Interproscan
IPR048538	Domain	Rrn7/TAF1B, C-terminal cyclin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31576	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001164	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001188	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0005668	Cellular Component	RNA polymerase transcription factor SL1 complex	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042790	Biological Process	nucleolar large rRNA transcription by RNA polymerase I	Interproscan
GO:0070860	Cellular Component	RNA polymerase I core factor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-