Gene detail

Detailed information of KAK2160609.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2160609.1	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	ctg129_pilon	124430	146404	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2160609.1

ATGCAATCAGTGCCACTGAACAAGACTTTGCCAGATACAAAGATAGACAATGGCATTTGGAATCCTTGTAGCAGCTTGTGGGATCAAGGAATAGACTGGCAGGATATAAGCAACTGGCGTGGTCACGAAGTTGGAGGGCCACGGCCAGAGCGCCCCAGATCTAGTGATTGGACAAATAAATCTGGAGAGGTAATTGTTGATGCACAGGATAAGGAAACTTGGCCAACTATTGGTGACAAATCTGAGGCTACATTGGATGGTGGTGACAGTGACAGTGCATCAGTTAAATCTGTGATATCCAGCTCAAGTGCCCCTAGTCAAGGACATGGGGATACATCAGGACAAGGAAGTGCCATGCAAGGTCAGAACCAAAGTTCTTCCAGTTTATGGGGCATGACCAGCATGAATAGCAACGCTGACGCAAAGATAGATTCAGAAAACAGCTGGGGAATTGCCCCACAGACTTCAGTCGGCTCGAGCATGTGGGATTCAAGCTCCAGCATTAAGACAGCTGGTCAGAGTACGAGCATGCAAGGCATACCAAATGGCATTTCAACTAGTGGCAGTATATCAAATGTGATGCCCACCTCAACAAACAGTACTGGTGGGTGGGGGGATAGCTTACCTGGGGATGGTACATATCCTGGGAACAATTCTGGTGCTCAAAATGAAACTGGTTCGGGCCAGTCCAGTTCCTTTGGTAGTGCTATGTGGCAGGGTATTCGTAACATGTCAGGTGGTAGTCTGTCAAATATAGATAACAAAGAGGCAGCTTCTCAAGGGTCTGGATGGGGCAGTCAGTCCTCCAGCAGTTCTGTGATTGGTTCTGGTCTCAGTATTTCTGCCAGCTCGAGTGGCAGTGTTTTTAATGCCAAGGGAGTGTCTGCAATGAACCAAGAGAATGCAGATGTTGGTCAGTGGGGCCAGTCCTCAACAACATCAGCAGGAGGTGGTGATATGTGGGGGGGTGGTGGTGGTGGTGGTGGTGCTGGCTCAACAGCAAGTACAGGTAGTTTTGAAAACAGGAACACAAGTAATAAACCAGAAGCCACTGGCTGGGGGTCTCCTAGTCCCAGCCCTATCCCCAATGCAGGCACTGAGGGATGGGGACAACCCGACCAAAAGAAGGAGCCCCCACAGGCCTGGGGTCAGGTACCTACTTCTACCACAGGCTGGGATCAGCGAAGACGTCCCAGTTCTTCAGGCTGGGAGGAAACTGGATCAGCAGAGAGACGCCCAGTACCTGGTTGGGGTAGTGACACCAAAACAGATACCAGTGGTAACTGGGCACAGAATCGTCCAGCTCCCTCTGCCTGGGGTCCCTCAGCAGACACTAAGGCCAGCCAGTCCCAGTGGGGGAGCTCAGGTGCCAGTGGACCTCAGTCCCAATGGCCAGACAGCAGTGCTTCACAAGCTACCACCGTCACCACAAATGCCAGTCAGATTGGGGCATGGGGCAGTGGAAATCCCATGACAGCAGCCAGACCTCCACAGCCTCCACGACCCATAGGAACACAGGTTCCTCCAACCCAGGGACCACACCCATCACTTCCAAGTCAACAGCAACAGCCACAGTCACTGCCTCAGCCTGGTTCATGGGCAGAAGCAGCTGGCCGAGGTTTGACAGCTGTGAAACCAAGCCCAGTTGGTTCAACCACAAGAAAGCTCACGAAGGAAGACCTCATTGCTGAAGCGATCAATACTCCAGAAAACTGGGGAAAGGTGCCAGTTCGTCAGGATTCAAGCTGGGACAAGATAGAAGATTCTCCTAAACTTCCTCGCAAGCCTCTCGGAAGTAGCAGCAGCAGCACAGGCAGTCAGGAAGATCTTCACTGGAATCAGCCAAATAATGGAACTGCAATTTGGGAATCTGCCAAGGAGCCCACCACATCACCCAGTGTGTGGGACCGTGCTTCAGCAGGTGCCTCTGGCAGCAGCAGTGAATGGGGAGTGAGTAGTGATAATGATGGAGGAACATGGAATGGTGACGGTTCACAAGCACAACAAGCAGCTCCCCAGACTCAGGATTCTAACATGTGGCAAGGTCCACCACCTAACACGGGCAGTACTTGGAATCAGCCACCAAATAGAAGCAATAGCAACACGTGGGTTGGTAATGATGAGAGACCTGGATCTAACAGCTGGAGTTCAGGTAGTTCTGGCAGTAATGACTCAAAAAAGAATTGGCAGAGTAATCCCCCTCCTGCCCCTGGACAGCCAGGACAAGTGTGCAAGAGTGATAATGTCTGGGATCGTAATGGTACCAGTCTTTGGGGAGACCCAGACAAAACAGAAACCGGAACATGGGGTGCAGATGGCATGCGAAGGAACTCTGGATCTGCTAGTTGGGACAGGGAACCTGAGACAGGACAGTGGGGTCAGCCTGATAACAGTAATCGCACTGTGGAACCAGGTGCCTCGTATTGGGGCAATCCTGATAGGATCCCCGGACACTGGAACAATCCAAATAATCCTTCAGCGCCTGTGGCTCCTCACGCCCCTCAGCCAATTACTGGTCGTCCACCAAGTGAAAAGCTTATTTGGGGACAGACTGTGCCTCCGTCCAAACCAGGCTGGGGTGACACAAGCCCTCCAGGTGCAAGAGAAGAAGCAGCCATGTGGAACCAAACTGCTAGACCTGCTGGATGGGGAGATAACCAGTGGCAGAAAAGAAATCCACCCACCTCTAGCTGGGGTGAAGCTAATGACTGGAATGCAATTAATGCTACAAGAAAGCCACCCCAGAGAAGCCGCATGCTACAACAGTTGATGGATATGGGATTTAAGAAAGAGGATGCTCAGAATGCTCTTATAAGAAATGATATGGATCTTGACAGAGCTATTAGTGATCTGGTTGCTAGTGCAAAAAGACCAGAATATGATGCTGATACATTCAGAGGTCGTCAGCTGAAAGGAATGGGTAGTTGTGAAGATCTTGCAGACACACCTGTGGAATTCCTGCCTCCTCCAAATACTCTCACCAATGCTCAAGGTTTGCACAACACTCAAGTCATTGCCAGCCCTTACGCCAAACAGGGGCCTAGTCTACCACACATGTCTAGTCTCACAGCACCCAGTATTAACCCACTTCAGAAGTTGCTGCCACAGCAGCTTAGCAAGCCTCCTGTGCCTGGTCAGCCAGCTCAGCCTATCCGAGGCCAGCTGCCTAACCAAACCCAGCAGATGATACAGGCCCAGATAGTTCAGCAGTTACAGATGGCTGTTCAAGCTGGACTGATTAGCCCACAGCTTTTAAATCAGCATCTTACCCCTGCCATGCTAGTGATGCTACAGCAGCTGTTGCAGTTGCAGCAGTTGTATCAGCAGTTGGTTGCCCAGCAGCAAGTGTTGCAGCAGAATAAGGCTATGGCCCCGCCTCTTCACCAGCGTTCACAGCTGGAGCAAGTCTCCCTTACCATTACAAAGATAAAGCAGAAGATAGCTCAAGTGCAGCAGGCACTTGCCAAGCAAGCTGGTTGCCAGCAGCCCGCACCAGCTGGGATTGACCCAAACAAGGAGTTGCTCAAGGATCTCCAAGCAGACATCAGCAATCTTCACCTGAAGGACAACCCTATTATACCTCCACAGCAACCGCCACAACATGGCAATCAGCCCGGACAGCAGTCCCGACTCACACAGTGGAAGCTACCATCACCAGACAAAGACCTTTCTGGCCATCTGACTCTCGATCTGAATCGAGCTCCTGGTTCCAGGCCGATTGGACCTCATTCCACACCACCAAACCTGCAGAACAAGCTAGAACCAGGCGTCTCGTTCACCGATCCTTGGAGCAGTTCTCTTGCCACAGTTTCCACTGTGTGGCCATCCACCTCAACAACAGTCACTACCACAGCTGCCTTGCCTCACACCGATACTAAAACAAACACAGCTACAGCGGATGACAAAGAATCTTCAGGTAACCAGTCAAAACAGTGTTCGGAGGATCAGAGTGCTGCCGGTGCCAATTCTACCAATCCTGCTACACCTACCTCCTCTGCTGCATTAGATATTGAGGAATTTGTTCCAGGGAAGCCGTGGCAAGGGATCGTCACAAAATCAGTTGACGATGATCCGAACCTGACCCCAGGCCAGGTTGCGATGAGACGTCCACTCAGCATCAACACAATAAAGGACGAGTATGTGATGAGTACACTGGGCAAGTCGTCGAGCAGCAACAGTCTCAACTCAAGTCCCACAGTATCTGATGGAACAACAACATCAAGTTCATGGAGCTCTGCTGGTGGTCCAACTAGTCTGGCCAGCTCAGCATCCAGCCCAAATCTGCTAGAAAAATCTACGTGGTCAGCAACACCATCAGAAAGTGCTCCGGGTGTATTGGCATCTTCTGATATTTGGGGCATGTCAGGTGTTGGCGCAGCAAAGAACCGTCGCCCTCCTCCAGGGTTAATAAACCGCAGTATTGATGGAGGAACGGTGAAGAATTTGTGTGTACAGCAAGGCTCACTGCAGACTTTCTTGCACAGTGCACAGTATGGTCAAGCCTATGTCTGCTACAAGTCCAGGGAGGATGCCATTAAAGCTCAGAAGTCACTCAATGCCCTGGTTTTTGGCAACACTGCCATTATTGCTGAATTTGTTAATGATGCTGAGGTTGCACGTCTGCAGGAGTTGAGCGGTACCAATCCAGTAGCACCTCACTCAAGTGGTGGAAGTCCTCACTGGTCACAGCAGCCCCTTCATTCTGGCCTGCGTCCAGGATTTGGAGGACCAAAATTTGAGCAGGCAGCCCACCTGAATGGAGCTGCTAATTTTGGAGTTGGAGTTAGCAGCAGCGGAAGTATGTGGGGTTCAGGTGGCAGTGGTGGTCTATGGGGACCCATTGAGGAACACGCTGACAACCACATGCTTCCTGGTGGCCTTCTTGGAGGGCATTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF12938	M_domain	M domain of GW182	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR026805	Domain	GW182, middle domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052068	Family	GW182 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0035195	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-