Gene detail

Detailed information of KAK2159987.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2159987.1	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	ctg142_pilon	399498	435879	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2159987.1

ATGGCCACGAGAATGTCAGGTCGTCTTTCTCTGGGTGTATTTAGTAGATTATTGAATTTAGTCGGGCCTGTTACAGTCCGAAGTGAAAGTCATCTGCACAGCCAGAGTGGGACTAGACATATATTGACCAGGTCATCATATCATTATAAACAGAGTCTTCCACAGTTACAACAATGCCGCTCCATGTTTGTCCAGACACAAGAAACTCCAAATCCAAACAGTCTCAAGTTTATTCCTGGCACTACAGTGTTATCTGATGGAACTAGAGATTTTCCCAATAGCAAGTCAGCTCAGGTATCACCATTAGCAAAACAGCTGTTCAGAGTTACTGGAGTGAAAGGCGTTTTCTTCGGAACTGACTATATCACAGTTACAAAGTCAGATGAAGATCTAGATTGGCAGCTGTTAAAACCTGACATATTTGGTGTATTGATGGATTTCTTTACATCTGGCCAGCCAGTGTTATCTGTTGAACAAGAACCTGTTCAAGAGAATGAAGAAGAAGATGATGAAACAGTTTCCATGATCAAAGAGTTATTAGACACAAGAATACGACCCACAGTACAGGAAGATGGAGGTGACATCATCTTTATGGGTTTTGATGATGGTGTTGTTAAGCTGAAGATGCAGGGTTCATGTTCTAGTTGTCCTAGCTCTATCGTAACATTGAAACAGGGTGTGCAGAACATGCTCCAGTTTTATGTACCAGAGGTCGTGTCAGTGGAACAGAATGAGAAAACTAGTCGTCCAAAGGAAAAAGAGCAAGATGATTATGCTTTAAAAGGAGACTTTGAAAAGTTTGATTTGTCACCGTGGATAGTGAAGAATTTGGAGAGAACCGGAACTGGAAAGACAGTGTTGGTATTAGCTCCCACCAGAGAGTTAGCTAAACAGACTGCCAATGTGTTTTCTGATTTGAGTAGTCGTCTTTCTGTTCTTGCTGTGTATGGAGGGACCCCATATGGTCCACAAGAGACATGCATCAGGGCTGGGGTAGACATAATATGTGGGACTCCAGGACGGATTCAGGATCTTCTCAATAAACAGATACTGAATCTGGATGATCTCGAGTATGTCATACTTGATGAAGTGGACCGTATGATGGATATGGGCTTTGCTGACAGCGTTGATGACATCATTAAGCACAGATATCAGCAAAAGAGAGGAGGAGATATGAGTGACAATCCACAGACATTGATGTTTTCTGCCACACTGCCTGGGTGGATTCATAAGATGATTAAGAAGTACCTTCGTGAAGATAGTGTACTTCTGGATCTTGTTGGCCGTGATTCTGTACGGACTTCAACCACTGTCAAGCACCTGGCACTGAAATGTCCTCCTTACTCCCTGGAGATGATGATTGCTGATTTATTACAAGTACACGTTGGTAATTTTGGTCGAGCAATGGTCTTCTGTGAGACAAAACGGGAAGCAGATAAATTGGCCATTAGTTCTCTGATCAAACAGGAAACACATGTTCTCCATGGTGACATACCACAGGATAAACGGGAAATGGTTTTACGTAAATTTCGAGAGGGAGGTTACAGATGTTTGATTACAACAGATGTTGCTGCGAGAGGACTCGACATTCCAGAAGTAGATCTTGTCATAATGTGTTCTCCACCTAAGGATGTTGATGCATACATTCACCGGTCTGGGCGTACTGGACGTGCTGGTCGTGCTGGTATTAGTGTGCTTCTTTATGATCATAAGACAGAATATGAGCTACGTCGAATTGAAAAACATGCATTCAGGTTTGTTAAGCCACCCACAGCAGAACAAGTCAACAAAGCAGCTATTGATGATGCCATTAGGACTCTAGATGACATAGATACAGATGTGATAAGATTTTATCAAGAGGCTGCGGAACAACTGATAGATACTCGTGGAGCTGTGACAGCTCTATCTGCAGCACTCGCTGTCATTGGTGGTGGCATGCAGACACACACTAGGTCATTGATTACATCACAAAGGTCATGCGTGTTTGACCTGCCTAGTCACATGGACAAGGCTGTTGCTGATCAGTGGACTGATACAAAATATGACAAACTAAATAAACCTTCTAAGTTACCTGATTTAGCTCCTATAGAAAAACGGGAAATTGAAGAGAGGAATAGATTTAGAAGTAGAAGTTATACAGGTTACCAGTCTAGGGATTTTGAGGGAAGAAATAGATACAGAAATACGAGTAATAAAAACTACCAGCCCAGAAATGGCTACAGAAGTAATTGGAATGAGCATGGAACTAACAAGCATGGTTTTGGTGGTGATAGACATCCTGCTAAAGGTTACAAGACTGGCTTCAGAGATGACCAGTATGATGAAGACATGGAGGAACACCTATTTGAGGGACAGTTTAGGAAGCGGAATTACAGCGTTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01106	NifU	NifU-like domain	Family	Interproscan
PF08712	Nfu_N	Scaffold protein Nfu/NifU N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001075	Domain	NIF system FeS cluster assembly, NifU, C-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014824	Domain	Scaffold protein Nfu/NifU, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034904	Homologous_superfamily	Fe-S cluster assembly domain superfamily	Interproscan
IPR036498	Homologous_superfamily	Scaffold protein Nfu/NifU, N-terminal domain superfamily	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-