Gene detail

Detailed information of KAK2158245.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2158245.1	PROTEIN KINASE C-BINDING PROTEIN 1	ctg174_pilon	491251	538451	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2158245.1

ATGAGTGAATCAGCTGAGGTTAAGAGAATGGGCACAAGATCAAAAGGTGAGGCAGCCAGTAACACCTCAAGAATCAGTCCTCGGAGAAGAAATATTGTACTCGGTGCCGGAGCTGTGAGGAGCACAAATGTTGAGAAAGCTAAAGATGGCAGTTTGATATACAAGAGGCGCAGTTCCGCCAGCAACAATTCTGCACTGAATAGTTCACCACCACCAGAAACAGAAGAGAGCTCAACAGAGAAGACCCAATCAGCCCCAGCTGAGTGTCGAATACACAAACGTATGCGAACAGTACATACTAACAGTGGTGGAGAGGAAGTGGAGAGCGATGGCTTTTGTTGGTTATGTCACAGAGAGGGGGATGGTGTATGCTGTGAGCTCTGTCCTCGTATGTATCATCTCAAGTGTCTGAACATTGAGAGCATTGCCTCAGACTGGGTCTGTCCAGAATGTGAGAAAATCCTTCAAGCTGAATGTGTAGATACAAGATCAAGAGCAATGTCATTAATAACAGTAGATCAACTCTGTGTTCTGCTCAAGTATGCCTTACAGAGAATGAAACATACAGATAGTGCTGACTTTCATAAACCTGTAGATTTGAATGACGTGCCACATTATACTGACTATATACACAATCCAATGGACTTGACTACACTAGAAAAGAATATCCGCAAGAAACTCTATGGTAGCACAGAAGCATTTTTGGCTGATGCTAAATACATATTACACAACTGCATAGTGTTTAATGGAGAGAGAAACAAGCTAACTACAAATGCTAAGATGGTGTTGAAGATTTCTAAGCATGAGATGAACGAGATTGAGATATGTCCTGACTGCTATATGAATTCGTGTACAAAACAGCAAGAGAACTGGTTCTGTGAGCCTTGTCGTTATCCACACACCCTAGTGTGGGCGAAGATGAAGGGTTATCCTTACTGGCCTGCAAAGGCACTAAGAGTGGTCAATGGTCAAGTTGATGTTCGATTCTTTGGAGAGCATGACAGGGCCTGGGTTCCTGTGGGTCAGGTGTACCTGTTGTCTAAGGATCCACCAGTCTCCATTAAGAAGGGACGAGGAGGCTACGACCAATCAATGGAAGAGCTTGATTTGCACATAGAGCGATTAACAAAAAAGTTTGGTAGTTTCGAATATGCTCCCAATAAAATGGTCTATGATCCATATGCACACATCAAGGCCACTGAGGATGGTGGCAAGGCCACACCAACAAGGTTAAGCACAAAGTCATCAAGCAGTACACCTAGTTCTTCCAAGTCACGCTCCCCAGCAATCACCACGAGCCTGCGGAGTGGACCATCAAAATCTCCAGAAAAGTCGCCATCCATCATCACTCGTACGGCATCAGCTGTAAAACTGAAATACAGCAGCATCATATCAACAAGGCACACAAAGCTAAAAGGTCAGACCATTGGTGATAACATCATTGTGGCTAAAGATGATCCAGATAAAGGGAATGATAAAGAGTCTTCTAGAGGAAAGTCAACCAGTAAAGATGACGATGATGATGATGAACCAGAATGCAAGAAAGCTAAATTAATGACACCATCTGCAATGGGAGGGGACCAAAATGCAGGTCACAAACAGGATCATTCAGATGTTGAATGTGATGCAAAGGAGGAGAAAGTGGAACAGCCACCAATGGTAGATGATTCATTGTGTGAAAAAGATAAAAAGCAAGAAGAGGTATCTAAGGTCAGTGAAGACAAGACTTCTTCTGGTGATGAAAAATTGACGAAAGTGTTCCTGCTTAATGAGGACATGATCGAAGAGACGAAGCCAAAGCCAAGTCTTTGCTCGCTTCTTGATGTTGTTCCCAGGATTAAACATCCCGACAAGAAAGTCATTGATGAGATTGAGAATAAAATTAAGCGCCTTCAGGATCAGGTAAATGATGAGAAATGTGATGGTGATGATAATGATAAAAACGTTGATGATGAAGATGATAAGGATGATTGTCACATTGATAATAAAGATAAGACGAAAGATGATGATGATGATAGCAAAGAACGAGAATGTGATGCAGAAGAGACAGAGAAAAACAGAAAGGAAGAGAGCAAGTCACATCATGAAATCGAGCCAGTCTCAGAGATTCAACCAATGGATGTAGAATCTGAGTCAGGTGGATTGAAATCTGGTGCGACAACATCTGAAAATACAACGAAACAAGTGAACCAGCAGAGTCCGACTAAGAATGCTTTCTTGGAGAGAATTGTGGCAAGTTGTAAAGAGAAGCTGGGAGTCGACAACACTGAGGTAGCTGATATATCATTGAGACTATCAGTCAGTGAAGCCGAAGACGAATCAACTTCCTCTGCCAACTCTACATCGGAAACATTATCAGATGATGAATCAGAGCAGCATGAGAACAAAAACAGCAAGAGTCTTGAGTCTCCAGCACAAAAAACCAACTCTTCAGTCTCACCGAAACCGATATCAGTAGAAGTGATTGAATCAACTTCGGGTGAAAAGGATAGGATGGTAGGTCAGGATCAGAATCAGTCAGTAAGAAGCAATGACCAAAAGAAAGTGCTGGGTGATGCAAAATCAGATCCCATTGCCATGGAGAATGACTCCTGTGAAACAGTTGCTGCAGTGTCCAGTGAACCTTCTCATAGTGGTACCAGAATACTGTTGGCCAGTCCAAAAGAACTCTGTGACAAACGAGAAGTCATCGTCATTACGGAACCAGATTCTCCTGATGATCCCATTGCAAAAGAAACATCGGAAAGGAGAGCCAGTGTCTCTGGCACCAAAAGGACACTGGATGTGCGATCTAGTTTAGATGGTAGAGCTGGTCAGATGAAGACAAATGAGGCTGGAGCCAGTCAAAGGTTGAGTCCCAGCACTGTGAAGATCAAGCCACAGAATGTGCATGCACCCAAATTGCAGACAGCCACAGTGCTGCCCGAAAAGGTGATGCCACCAGCACAGAAAACAGTGATTAGCCTGGTTAATGGAAGCAATGGACTCTCAGCCTCACCATCTAAACAGCAAGATAACATCCCTTCAGATTTCTCACCAGCCACACCAGAAATCGACTTTACTGGTTTGGACATAAGCAGATACACTAACAAGGTGATGAAGACAGTTCAGAATACATTACAGGAGTTCTGTATGGATATGATACATACTGAGGTTGGCTCAGTGTTCAGACAGCACCTCCAGCTTGAAGTGAAACGTCTAGAGTGGCGACACCAGCAGGAACTTAATGAAATCAAGCACACTGCGAATTTGAAATTACTTGAGTTACGGGCAGCAATGGAGTTGGAGAAAGAGAAGGCAATAGACAACATGATCAGAGATCTCAAGTATAAATATGAGGCTGAGAAGAAACAAGCTGTTGAGGAGACAAAGAAGAAACAATGGTGTGCCAACTGTGGAAAGGAAGCAATCTTTTATTGCTGCTGGAACACAAGTTACTGTGATTATCCATGCCAACAGGCTCACTGGCCACAGCACATGTCATCTTGCACCCAATCACAGAGCAGTCAACAGTCACATGACTCCAGAACTAGCCATTCAGATACAGCATCAAACCCGGCACCTACAAATGTTGACGTAGGTGGATCAGTGCTGAGATATATACAACCAAACCCAGGTAACCCAGGTCAACGTTTTCAGCACAACAATCCACAACAGTTTCAGCTCAGTGCCATGAATCAGATGAACCAATCACAGCCACCACTTATTATGGTCAGCACAGGCCCTACCCACCAAGGTCCGCTTCGACCCATCATAAGCCACAACACACGGGCACCTCAATCTCTGATCCTCCCACATGCTGGTCGACTGCCACCCAACATGATGCAAGGATCAGGGATGCATTATTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF00855	PWWP	PWWP domain	Domain	Interproscan
PF01753	zf-MYND	MYND finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313	Domain	PWWP domain	Interproscan
IPR001487	Domain	Bromodomain	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR037967	Domain	ZMYND8, Bromo domain	Interproscan
IPR044075	Domain	PRKCBP1, PHD finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46453	PROTEIN KINASE C-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-