Gene detail

Detailed information of KAK2148690.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2148690.1	BETA-CAROTENE DIOXYGENASE	ctg487_pilon	404629	428990	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2148690.1

ATGCTGACGAGTAAGATTTATTTATCGGACATAAAATTCAATATTGCCTTTTTTCAGTTGAAAGAGTACAAGGTGATTGGGCGTATGCGCCCCACTGAGAAGGATAAGAAGCCCCCATTGTACCAGATGAGGATCTTTGCCCCAGACAAGCCAACTGCTGTCTCTCGTTATTGGTATTTTTCATCCCAACTGAAGAAGATGAAGAAAACCCGTGGAGAGATACTGCTTTGTCAGGAGATTCATGAGAAGAGGCCAACAAAAATCAAGAACATAGGCATCTGGCTGCGTTACGACTCGCGCAGTGGCACACACAACATGTACAAGGAGTACCGTGACCTGTCAGTTGCTGGAGCTGTCACCCAGTGTTATCGTGACATGGGAGCCAGACACAGAGCTAGAACTGGGTCCATTCAGATTATCCGTTGTGAAGTGATCCCAGCAAGTAAATGTAGAAGGCCGTACATCAAGCAATATCATGATAGCAAGATCAGGTTTCCCTTGCCACACAGGGTGTCGAAGAGACTGCACCATCCACGCTTCACTACAGAGGTTGAAAGAAGTGTGAAATTGTGTCTGATAAATGTGGTTCACAGTGTTAATATTCACCTAACTGGGTTGACCAGGGACATGGTTCTGGCCTACCATGTGCACAAAAATGGCCATAAAACACCAATCATCACCAAGAAGAGAATTGGTGGCAGCATAGCGGCAAGTTTCAAGGAACAATTCTACCTTAAGAGGAAGCTGGCAATGGCACTCAAAAACAAGGTGGCTTCTCACTACGTTGGTGTGAGCAAAGAAATGGCCAGGGGATTGCTGCCAGGTTGGCTTAAGGGTACACTGTATCGTAATGGTATTGGTAAGTTTAGATTCGGTCCAGATGAAGCGGTACACCTGTTCGATGGTATGGCTGTTCTACATCAGTACAACATCAAAGATGGCCAGGTGTCTTACCGCAACAGGCTCTTAGACAGTGACACATACCGAAGAAACAAGGCAGCTAATCGTATTGTGGTGTCGGAGTTCGGAGTTGTTGCACATCCAGATCCGTGCAAGTCTTTGTTTACAAGATATTTTTCTTATTTTTTTGGGTTTGGAAAGCAGACAGATAATGACTGTGTTAATGTCATGTTACTCGGTGACCAGCTGTATGCATTAACAGAGACGCCTCGAATGAACCAGATTGATCCTGTTACACTGGATCGTGTAAATAAGGAAAACTTGAGCAAATATGTAGCAGTTCATCTGTCAACTGCACATCCCCTGGTGGAGCCAGATGGTACAACGTACAACATCGGTACTCACGCATCACGACACAGCAGCTACAAGATTATAAAAATCCCACCACCCCAAGCAGGCGACAACAACCCTGTGAGAAGTGCTGTCCTTGTGGGTTCGATTCCATGCCAGTGGCCATTGACGCCCTGCTATTCTCATAGTTTTGGCATGACGCCAAACTACATCATTTTTGTGGAACAACCAATGGCGTGTAACTTGTTTGAGTTAGCCACTGGTCATTGGACACGAAAGAGTCTACTTGACTCTCTACATTATTACGATAGCTACAAGACAAAGTTGCATGTCTTAGACAAGTCTACTGGCTCCTTGGTTGATATCCAGTTTGTGGCCAACGCATTCTGTGTTTTCCATCATATCAATGCCTATGAGGAGGATGATCAGATTGTCGTTGATGCCGCTGTGTATGAAGATGCCAGTATATTTAAATGTTTCACATTGAAGAACATAAGGGATAATGGTCCTATATCCCAATCACGCTTCAAAAGATTTGTTCTTCCACTGAATGCTCACGAGGCAACTACAGCGACTGCACTGGATGATGGCACAGTGTATTGTGTACCTGAGTGTATATCTGATGCTTATATTGAACTGCCACGCATACATTATGAGAAGTACAATGGTCAAAAATACAGATATGTGTATGGTATTTGCACGGAGAATATTCAATTTGACAAGTTGGTTAAGTTAGATATTCTAACCAAAACCAAGACTTTGTGGGGTGAGGATGGTTATTTTGCTGGAGAACCAGTGTTCGTTCCTGATCCAGAAGGAACAGAAGAGGATGATGGTATTATCTTATCACCTATGATTAGAACAAAGGATGATTTGCAGTCTTTTCTGCTCGTGTTGGATGCAAAAACGTTCACAGAAATAGCTCGTGCTCAGGTTCCAGCTGACATTAACATTCCTATGTCGTTTCATGGAATATTTGCTAACATTTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01775	Ribosomal_L18A	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	Domain	Interproscan
PF03055	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004294	Family	Carotenoid oxygenase	Interproscan
IPR023573	Domain	Large ribosomal subunit protein eL20 domain	Interproscan
IPR028877	Family	Large ribosomal subunit protein eL20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0003834	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0010436	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121	Biological Process	carotene catabolic process	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0042574	Biological Process	retinal metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-