Gene detail

Detailed information of KAK2146811.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2146811.1	DNA REPAIR PROTEIN RADA	ctg583_pilon	245183	247427	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2146811.1

ATGAGCGCTTCCACGAAAGAAAGCGAACTAATAAAACTTCAGGAACTGTCAGGCAAAACAGCAATAAGAGTGTCAGCTGATGTGTATTCATTACTTCAGAAAGGGAAACAGATTTCACTACAAACAAATGGATTGTTCAATATAGCAATTCTCCCTCTCGTACAATTGTGGGATATCACCGCAGCTCACCCCAAAGCACCTCAAAGGGAACAGGTTATCAACATACTTCCGTTATTAGATTTTAATAATGTTAAATTGTTACCTAAACAAAAAGTCCTTCTCAGTCAACCTGGAATGGGAGTCGACCTTGGTGGTATCGCAAAAGGATACATCGCAGAACAGATCGCATATCTTTTAAAGAAAGAGCATATATCATCTGCACTTATAGATCTTGGAGGAAACATTCATGTAATAGGAACAAAACCGGATAAACAACCCTGGATCATTGGCATTCGTGATCCACAAGGAAACATGTCACAAATAATCGGCACTGTTAAAGTAACAGATGGATATTCAATGGTTACAAGTGGAGCCTATGAGCGTTATTTTATGCAAGATGGAATACGTTATCACCATATTTTTGACAGCCAAACAGGATATCCTGCAGAAAGTGATTTGGAAAGTGTAACAATAGTAACCAAAAATGGAACTCTTGCCGATGCATTATCTACCGCTTTCTTTGTAGCAGGCAGTCAACAGAGTATAAACTTGGCAAAAAAATTTAGCACTATTGGTTATATTCTGTGTTCAGTGTGTGGAGTTCTACAACCAAAATGGTTTGGCAAATGCCCACAATGTGGACAGTGGAATACTGCAACTGAATCAGTTGATCCAACTAAGAAAAAATCAAAAATGCATGTATATTCCTTGCAAGATAAAACAGATTCTTCTGAGCAAGTAATTAAAACAAATATACGAGAACTTGATCGCGTGTTAGGAGAGGGGATGAGTAAAGGATCCTCAATACTCTGCGGTGGACCTCCTGGCATTGGAAAATCTACGCTCATGTTGCAATTGGCGTCTGCGGCAAAAATAAAAACACTATATGTAACAGGAGAAGAAACACTGAGTCGTATCAAACAACGAGCTATACGATTGAATGTACATAAAGACTCATTCTTAATCAGTATGGACACCTTACTACCACTGATTATTACTGCTTGCGAAGAAAAGAAACCAGAACTACTAATTGTAGATTCCATCCAAACCATTCATGATGAAGAACTAAACGGTAGTGCGGGATCGGTCGGACAAATACGACATTGTACACACCGCCTTATTGAGACATGTAGAACATTGTCAATTATTCTCATATTAGTAGCTCATGTAACTAAAGAAGGAGAAATAGCTGGCCCAAAAATTCTTGAACACTTAGTCGATATTGTTTTGTTTTTTGATCAAGGTGATATGGATTTGCGCTTTTTGAGAAGTAGTAAAAATCGTTTCGGAACTACTCATGAAGTAGGTCTTTTCATTATGGATGCACACGGTTTGCAAGCAGTACAGGATCCTTCGGTGTTTTTTCTTGTACGAAGAAAAGGGCCTCCTCCTGCTGGCGTAATATCTGTTCCCATATACGAGGGATCTCGTGTTTTTATGGTAGAAATACAATCTCTTATCGTTCCCGCTTCTTCTTTGTCGCGTATTTATTCTGATCGCATCGATCCTCGGAGGGTTTCCCGTATGGCGGCTGTACTGGAAAAATATCTCGATATAACCCTTTCAAATAAAGATATATATATAAATGTAGCGGGAGGTATTACCATTCAAGATATCGGAGTAGACGTGGGCATATGTTTAGCTCTGTACTCTGCATATCAATCAGTCCCTGTTCCTGAAAAAACTACTGCATTTGGCGAAATAAGTCTTGCAGGAGAAATAAGACCTACTGCATTTACGAAACAAAGAATGCATACCGCCAAGGATATGGGCTTTTTGACTTGTATTGTGCCTTCGGATCTTGATACAACTCATACAAGTGCTTCCTCTTTAACAGAATTAATCCATATAGCTTTCAGCTCTCCTCACACAGCAAAAAAATAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02424	ApbE	ApbE family	Family	Interproscan
PF13481	AAA_25	AAA domain	Domain	Interproscan
PF13541	ChlI	Subunit ChlI of Mg-chelatase	Domain	Interproscan
PF18073	Rubredoxin_2	Rubredoxin metal binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003374	Homologous_superfamily	ApbE-like superfamily	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020588	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR024932	Family	Flavin transferase ApbE	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041166	Domain	LapB, rubredoxin metal binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32472	DNA REPAIR PROTEIN RADA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000725	Biological Process	recombinational repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0017013	Biological Process	protein flavinylation	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-