Gene detail

Detailed information of KAK2146793.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2146793.1	ADENOSYLHOMOCYSTEINASE	ctg583_pilon	173690	179277	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2146793.1

ATGGAAGCTGAGTTTGAAGAAAAAACAGTAGAAGATGCCATATCGTTGGCAATTGCAACCTTGGGTATTACTCGTGATCAATTCGATGTGGAAATACTGGAAGATAAACGAGGTATCTTTGGCCGAAAAGCACGCATTAAAGTAAGAACAGTTCAGCAAGTATCACTTTCGGCTGAAACTGATTATGAGCATGCTATAATGGATTTTATTCAGGGATTGTTACAAAGAATGAATATTCGAGGCGGCGTTGATATTGTAGATAGAAATGATAAAATCATTTCTATTAATATTTATAGCGAAGATGCATCACTTTTGATAGGTAAAGATGGGAAGACATTGGATTCGTTACAGCGTATTGTACATGCGATTTCAAGACGTTTAGCTATGGAAAAAAGAGTATTACTGGATGTAGAACAATACCGTGAGCGTAAAAAACAAAAATTATTACGCCTTGTTGCACAGATAATTACTAAGGTAAAAAGAACGGGGAAACAGTATACATTTTCTTCAATGGCGCCCAGTGAGCGAAGAATTATCCACCAAGCAGTAGCTGAAGTTGAACAATTATCAACTAAAAGTGTTGGAGAGGCTGATGCTTATTATAAGCAGATTAAAGACCTTAAGCTTGCTGAATGGGGAAGAAAAGAAATTTTGCTCGCCGAACAGGAAATGCCAGGTCTTATGAGCTTACGTGATCAATTTGAGACTAACAAGCCCTTAAAAGAAGTGCGTATTACTGGAAGTCTACATATGACAGTGCAGACAGCAGTATTAATTGAAACACTGGTAATGCTTGGTGCGGATGTGCGGTGGGCAAGTTGCAACATATTTTCTACCCAAGATCATGCGGCTGCTGCGGTGGTAAAAGGTACAACAAACTATTCATCAGTACCAGTGTTTGCATGGAAGGGTGAAACCGTAGCTGAATATTGGGATTTATTATGGCAGGCTTTCTCCTTTCCTCGTAATATGGGACCTCAACTTATTGTGGATGACGGGGGTGATGCCGCATTATTATTTCATAAGGGATGTGAGTTAGAAGATGGATCGCAGTGGGTTGAAGAAGATTCTCACAATGAAGATGAACATGAATTAAAACGGTTATTAAAACAAATTTTTGCACGTGATAGCAGTTTTTGGCATCGCTGTAAAGAAGATTTACGGGGTGTTAGTGAAGAGACCACTACAGGTGTGCTACGGCTTCATCAGCGGGAGGAAGAAAATAGCCTTTTAATTCCTGCTATTAATGTGAACGACTCAGTAACTAAAAGTAAATTTGATAATCTGTATGGATGTCGTGAAAGTTTGATTGATGGGATCAAACGTGCAACAGATGTAATGATTGCAGGCAAAACTGTGGTTGTGTGTGGATATGGAAATGTAGGGAAAGGATGTGCACAAAGTTTGCGGGGATATGGGGCACGTGTTATTATTTCCGAATCAGATCCTATTTGTGCGTTGCAAGCACTGATGGAGGGTTATGCGGTGAAAAGTGTAGATTCGGTGGTGCACGAAGCAGATATTTTTGTGACAGCAACGGGAAACACTGATGTTATTACAGTTTCTCATATGAAAAAGATGAAAGATTATGCAATTGTGTGCAACATCGGTCATTTTGATAATGAAATACAGGTTGCATCACTTATTAGAGAGGGAGTCAAGCGACAGCCCATCAAGGCACAAGTGGCTAAATATGTGTTTCCAGATAATCATTGTATTATTATCCTTGCGGAAGGACGGTTGATATCCAAAAAGATGGACCTTACAAACCGCGAGAATACAGGTACTAAATTGCGATCTTATATTGTGACAGCAGAAGCTCCTGGAGAAGGGCACCCCGACAAAATAGCGGATCAAATAGCGGATGCTATTCTTGATGCAGCTCTTATGCGAGATCCATATGCACGTGTTGCTTGTGAAGTACTGACAAGCACTGGGTTGGTCTTAGTCGGGGGCGAAATTACTACTGATGGGTATATTGACATTGCCAAGGAAGCTAGACAAGTTATCCAAGATATAGGATATACATCTTCTCAATATGGATTCGATGCACATTCGGTAAGTATTCTTTCTGCCATACAAACACAAAGTTCTGATATAGCTCAATCGGTTATAGGCCGTAATGGTGCAGTAATCGGAGCGGGAGATCAGGGATTGGTGTTTGGTTATGCATGTGATGAAACGCCAGAATATATGCCTTTTGCGAGCCTGTACAGCCAACGGATGATGAAAAAAGTAGCTCAACTGCGTAAAGAGCGCACATGTTCATGGATGCGGCCAGATGCGAAAGGTTTAGTTCGTATTGCCTATGAGCAGGGAAAAGTTTCGTATCTGGCAGGGCTTGTCCTTAGTGTCCAGCACGATGAACATGTTTCACAAAAAACCATACAAGAATTTTGCATTGAGCATGTCGTGAAGCCACTATTTGGAGATCTTGTGTGTGAGAAAACCAATATTCTAATAAATCCTTCTGGACGCTTTATCATAGGAGGACCTCAGGGTGATACAGGGCTTACTGGTAGGAAAATAATCGCAGATAGTTATGGAGGATCGGCACGACATGGGGGTGGTGCATATAGCGGAAAAGATCCCAGTAAAGTAGATCGTTCTGCAGCATATATGGCACGTAATATTGCAAAAACGATTGTAAAAGCTCAACTTGCTTCACAATGTGAGGTGCAACTTTCTTATGCAATAGGTGTTTCTGATCCTATTGGGTGTGAGGTTTCCACCTTTGGAACGGGAAAAGTTCCTGATAAATTGCTCTCAAAAAAAGCACTCCAAGTATTTGATTGTAGTCCGCAAGGAATTATAGATATGTTTCAGTTACGTCATGTCCTGTACCGTAATACGGCTGTGTATGGACATTTTGGGCGTGAAGAATTTCCATGGGAGCAGATAAGTAAGGATAAAATGCACACTCTGGTACAAAAAAATATTTCTGCACCCGGCGTGTGTCATCTTTTATGTGGTAAGATGACAAGGGAGGATATTTCTTTCCATCTTGAACGATGTCGTGTGATGAACATACAAAACGTACTGGTTTTACGTGGCGATCAAAGAAACAGGGAAGAGAGAATCGTGCAACGAGAGGGGAACCATGCCTTTTGCCATGCGGGGGATTTGGTAGCTTTTGTACAAAGAAAGTTCCCAGACTGTAGTATAGGAGTTGCAGGGTTTCCTGAAGGACATCCAGAAACACCTAACCGTTTCAAAGAGATGGATTATCTCAAATGGAAGGTAGATCAGGGAGCACACTATATCGTTACACAATTATTTTTTGATAATAGAGACTTTTTTGATTTTTGTGAACGAGCAGTTTTGGCTGGTATTTTTGTTCCTATTATAGCGGGTGTTATGGTAGTAAGAGCAAAGAAAATGTTACAAAAAATTGCAGAACTGGCACAGGGAGCTCGTATTCCTGCGAAATTGTTATCTGCAGTGCAATTAGCACGCAATGATGATGAGGTTAAAAAGATAGGAATTGAATGGGCGCTTAAACAGCTAGAAGGACTTAAAAATACAGCGGCAGGAATTCATTGGTATGTGCTTAATCAACCGGATATAGCTGAATCAGTATTAGCTGATAGTTGCCAAAATAGTACCATCTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00438	S-AdoMet_synt_N	S-adenosylmethionine synthetase, N-terminal domain	Domain	Interproscan
PF00670	AdoHcyase_NAD	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Domain	Interproscan
PF01424	R3H	R3H domain	Domain	Interproscan
PF02219	MTHFR	Methylenetetrahydrofolate reductase	Domain	Interproscan
PF02772	S-AdoMet_synt_M	S-adenosylmethionine synthetase, central domain	Domain	Interproscan
PF02773	S-AdoMet_synt_C	S-adenosylmethionine synthetase, C-terminal domain	Domain	Interproscan
PF05221	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan
PF13083	KhpA-B_KH	KhpA/KhpB, KH domain	Domain	Interproscan
PF14804	Jag_N	Jag N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000043	Family	Adenosylhomocysteinase-like	Interproscan
IPR001374	Domain	R3H domain	Interproscan
IPR002133	Family	S-adenosylmethionine synthetase	Interproscan
IPR003171	Family	Methylenetetrahydrofolate reductase-like	Interproscan
IPR015878	Domain	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Interproscan
IPR015946	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan
IPR020082	Conserved_site	S-adenosyl-L-homocysteine hydrolase, conserved site	Interproscan
IPR022628	Domain	S-adenosylmethionine synthetase, N-terminal	Interproscan
IPR022629	Domain	S-adenosylmethionine synthetase, central domain	Interproscan
IPR022630	Domain	S-adenosylmethionine synthetase, C-terminal	Interproscan
IPR022631	Conserved_site	S-adenosylmethionine synthetase, conserved site	Interproscan
IPR022636	Homologous_superfamily	S-adenosylmethionine synthetase superfamily	Interproscan
IPR029041	Homologous_superfamily	FAD-linked oxidoreductase-like	Interproscan
IPR032782	Domain	RNA-binding protein KhpB, N-terminal	Interproscan
IPR034079	Domain	RNA-binding protein KhpB, R3H domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR038008	Domain	Jag, KH domain	Interproscan
IPR038247	Homologous_superfamily	Jag, N-terminal domain superfamily	Interproscan
IPR039247	Family	RNA-binding protein KhpB	Interproscan
IPR042172	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23420	ADENOSYLHOMOCYSTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004013	Molecular Function	adenosylhomocysteinase activity	Interproscan
GO:0004478	Molecular Function	methionine adenosyltransferase activity	Interproscan
GO:0004489	Molecular Function	methylenetetrahydrofolate reductase (NAD(P)H) activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006555	Biological Process	methionine metabolic process	Interproscan
GO:0006556	Biological Process	S-adenosylmethionine biosynthetic process	Interproscan
GO:0033353	Biological Process	S-adenosylmethionine cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-