Gene detail

Detailed information of KAK2146765.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2146765.1	UNCHARACTERIZED PROTEIN YBGL-RELATED	ctg583_pilon	80575	85948	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2146765.1

ATGTATGAGAAGACGACGCGAGTACGGTGTTACAAGAATGTGTTTCTTGGATTACCTTATCTGTTTGTGTTAGGAACAGGGCACGCTGATTTCGTAAAGAAGAAATCACGCTTTATTGGAGAATCTAGGTATGTCCAATCTATTGAAGAGGTTCGTTTCCATGTGAAGAGACTTCGACGTGTACATCCTTATGCACGCCATATTGTATGGGCATTTGTAGTAGGAAATGATAGAAACCAACAGGGGCTGAGTGATGATGGAGAACCTCATGGTACAGCAGGACGACCTATTATGGATCATATTGAGGAATTTATGTATAAAAATTTTTTAATTGTATTGGTTATTCTGTTATTGGTTGGAGCGAGTCCTATCAAAATGGATCTTAATGCGAAGTATGGTGCAAGCAACTTCCATACAAAAGGAGCTGAAGCCTTTGCTAAATTAGTGAAAAAGTATACTAATGGGGAAGTGGAAATAACTGTGCATGCGGGAAGTTCATTGGTAAAAGGCAATCCTTTAAAAGCAGTTAAAGATGGAACAGTGGCAATGACTGATATGTTTATTCCATTTACTTCGGGAGGGGGAAAAGTTTTTGGAGTTTCTGCATTACCATTTATTGCTAATTCATATGATGAGGCTTTCAAACTGTACCAAACTTCCAAACATGTGTATAAAAAACTATTTCAAAAATGGAATCAGAAGCTATTATATGCAGTATCTTGGCCTCCTAGTGGATTATATACTAAGAAACCCATACGAAGTATTGCTGATTTTAAAGGATTAAAAACACGTACATATGATAAAAATTCTGCAAATTTTATTAATATGGCTGGTGGAAATGCAATAGCTCTGCCTTGGGCAGAAGTGTATTCTGCATTGCGTACTGGATTAGTTAATTCAGTGGTAACCTCATCTGCATCGGGGAAAGATGGTAAATTTTGGGAAGTATTGGATAATTTTACTAAAATAAATTATGCATATCCTCTCCAAGCTGTGACTATTAACCTTGATTATTGGAAAAGTCTGAGTAAAAAACAACAGCATATGATGAGCAAAGCTGCTGCAGAGATAGAAAGGGTACAATGGCAGGCCTCTAAAGATGAAAACATGGCAGCACTTACATTACTTGCTAAAAACAATATAAAGATTTCAGAGGCAAGTTCCCGTTTAAAAAAAGAGCTGGATGACATTGCACAAAAACTGTTAGCAGAATATTTAAAGGATGCTGATAAAAAAGTTAAAGATATTTTCAGGAAATACCATAAGAATCGTAGGAATGCTTATTTATCAGGAAGCCTCTTACATGTCAATGTAGCTGCTTGTTCACTGTTTGCTGCTGTGTCTGGCTCTTCTGCAGCTACTACTGCCACAGTAGGGAAAATAACGCTACATGAATTGAAAAAAAGAGGATATAAACAGTCACTTGCGATAGGATCTCTGGCAGGAGCAGGATTTCTTTCGCAGGTAGTAGGGTTTCTTGGTATCGCTCGTGCGCTGAGCGAATATATTGCTTCATTACAACTTTCTCCTTATGCTCTGATTATTGTGGTGGGATTTATGTATCTTTTGTTAGGAATGATACTTGATGGAAATCCTTTGCTTATAGAAGAGACAGTACAAAAAGCATTAAACTATGGTGTAAGCATAGGTGCACATCCCTCTTATCCTGACCGTCAGGGGTTTGGTCGTCGTAGTATGCATGTAATATCTGAGGATCTTCAAGCAATGATTATTTATCAGATAGGAGCACTTGATGCTCTTGTGCGTGCACATGAGGGAACGATATCTTATGTTAAACCTCATGGAGCACTTTATAATGATATGATGTGTAATGAGCATGTATTTATAAACATTGCACGGGCGGTTGCTCGATACGACAAGGAGTTAAAACTGGTACTACTTGCAAATAGGAATTGTGAGAAATATCAGGGCATTGCTAAGGAATATGAAATTAAACTCCTCTACGAGGTGTTTGCGGATCGTACTTATAATGATGATGGTTATTTATTAGCTCGCGATAAAGCAGGTGCGGTAATAAGTGATGAAATGAAAGTGCTTGGTCAAGTAGAACATATGATTAAATATAGTACTATTACTACGATATCTGGGAAGAAATATAAAATTGCCTTTGATACAATATGTATACATGGTGACAATCCTGAGGTGTTTCCATTGGTCAAGAAAATACATGTATTACTTGGACATGCATAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01205	UPF0029	Uncharacterized protein family UPF0029	Family	Interproscan
PF03480	DctP	Bacterial extracellular solute-binding protein, family 7	Family	Interproscan
PF03746	LamB_YcsF	LamB/YcsF family	Family	Interproscan
PF06808	DctM	Tripartite ATP-independent periplasmic transporter, DctM component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001498	Domain	Impact, N-terminal	Interproscan
IPR005501	Family	LamB/YcsF/PxpA-like	Interproscan
IPR010656	Domain	TRAP C4-dicarboxylate transport system permease DctM subunit	Interproscan
IPR011330	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR018389	Family	TRAP transporter solute receptor DctP	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036956	Homologous_superfamily	Impact, N-terminal domain superfamily	Interproscan
IPR038404	Homologous_superfamily	TRAP transporter solute receptor DctP superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30292	UNCHARACTERIZED PROTEIN YBGL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-