Gene detail

Detailed information of KAK2144032.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2144032.1	GTP CYCLOHYDROLASE II-RELATED	ctg793_pilon	180474	183322	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2144032.1

ATGCAAAAAGAACAGGAGTATATGAAGCGGGTGTTGTTTCTCGCATGTAAGGGAAGAGGAAAGGTGGCTCCTAATCCTCTTGTGGGAGCAGTGATTGTAAGGGATTCTCAGATTATAGCAGAAGGCTGGCATCATCATTATGGTTCGACACATGCAGAGGTCGAAGCGTTACGGCAGGCTGGAAGTAAAGCCCGTGGGGCAGATATGTTTGTTAATCTCGAACCTTGCTCTCGTCATTGGGAAGGAAAACATCATCCTCCTTGTACTGATGCCATTATTTCGGCGGGTATTCGTCGGGTATATATTGCGCATATGGATCCCCATCCTTATGTTCATGGAAGTGGTATTAGTACTTTACGTACTCATGGTATTTCGGTCTCACTTGGGCTGCTTGCAGATAAGGCACATGCACTTAACGAAGTGTATACACATTATGTGCGTCACAAGAGTGTTTTTGTACATTTAAAATATGCACAAAGTCTCGATGCGTATATTGCAACTCGCTCAGGAGAAGCACGGTGGATTAGTAGCCGACGAGCACGGAAACATGTGCATGAACTACGTGCGACATATTGCGGTATTTTGGTGGGTAGCGGTACGATTCATATGGATAATCCTTCGTTGACTGTGCGTCATGTAAGGGGAATCAATCCACAGCGATTTGTGGTTGACAGTTCATTACGTGTGGGAGATTCATCTACGTTTGTGCGCCTGGCAGAAGATGGGAAGAGTATTGTTTTTACGGCAGAAGAAAGGGAACACTGCGATGCTGCCATGAGATTGCGGGACAAAGGCGTGCATGTGCAAACATTACCACGGGATGAAACAGGCTATCTGTCATTGTCTGCACTATTAAATGTGCTGTATCATAAGCATCATATTTATTCTTTGCTTGTTGAAGGAAACTCTGTGGCGGTTGATGGTGTGTGTTTAACAGTGATAGAAAAGAACGATACTTTCTTTACGGTTGAGATTCATAAAACCACGGGCAATAAAAGCACCTTAGGATCCTTACAGAGGGGGCAAAAAGTAAATTTGGAACGTGCAATACAGGCGAAAGCTCGTTTCGATGGGCATTTTGTGCAAGGACATGTAAATGGGGTTGGAGTTGTGCAAAAATATGCATGGCATGTAGATGATCGTGAACTTGAGGTGTTGCTTCCTGATGATCTTCTTCAGTACTGTGTGCCGGAAGGATCAATAACCATTAATGGTATTAGTCTTACCATTGCAAAGATTAAGCGTGATAGTATTATGTTGAGCATTATCCCTCATACACATGAACAAACGAATCTAAGAGAAATGGAAAAGGGTAGACTGGTCAATATAGAATGTGATATTCTGGGAAGGTATATGAATCGTCTATTGCATTTTTCATATCTTGCTCATTTGAATATACCTAACATACATGAGAATAAGGCGATTTATTCTTCACGAGAAGCACGTTACTCGCGAGCGACCTATGCAGTGTCGATGCTCCGAAAAGGGAAAATGATTATTGTTGTTGATGATGAAACGCGAGAGAACGAAGGGGATTTTTTCAAACCTGCATGCACTGTTTCTGCACAGGATGTAAACTTCATGTTGCATCATGGAAGGGGTTTAATCTGTGTAGCTCTTCAGCAGGAACAGGCAGAAAAACTACATCTCCAACCAATGTCGTCTGACAATACAGCCCTTCAACGGACTGCGTTTACAGAAAGCATTGATGCGGCGCAAGGAACTACGACGGGTATTTCTGCGCAAGAACGTGCTTTCACTATTCAGAAAATAGCAGATGCGAATGCGCAAGGAGAGGATTTTCTGCGTCCAGGGCACATCTTTCCTATTGTCGCAGATGCTCAAGGACTGCGCAAAAGAAGAGGGCATACTGAAGCGGCTGTTATGCTAAGTAAGGAAGCCGGGTGTGTTCCGCCAGCAGGTGTGATTTGTGAGATCTTAAAAGATGATGGTACAATGGCTCGATGGGATGATTTGTGCGAAATAGCAGAGAGATTTTCCATGCCGCTTGTTACTATAGGAGATCTTATGACGTATATTGAAGAAAAGGAAGGTTGCGAAGACACATTACGTCAACATGGTGTGGAGGATATCTTATTGGTGTCCGTTCCAGGTGCTTTTGAAATACCACTGGCTTGCAAAGAGCTGATTCGCAACAAAGCTTGTGATGCAATAATTGCTTTAGGTGTTATTATACGAGGAGGCACCCCACATTTTGAATACCTTGCTACCCAATCAACGCGGAGTATACTTCAAATATCGGTGGACCATCACATTCCAATTGGATATGGTATTCTTACGGTGGAAAATCTTTCGCAGGCACTTGAGCGGGCAGGAAGCAAGCAAGGAAACAAGGGAAGGGAAGCAGCATTGGCTGCTATTGAAATGCTTGCTATCTCAGAGGCATTAAAAAAGCATACAGCTGATAGATAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00383	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region	Domain	Interproscan
PF00677	Lum_binding	Lumazine binding domain	Domain	Interproscan
PF00885	DMRL_synthase	6,7-dimethyl-8-ribityllumazine synthase	Domain	Interproscan
PF00926	DHBP_synthase	3,4-dihydroxy-2-butanone 4-phosphate synthase	Family	Interproscan
PF01872	RibD_C	RibD C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000422	Family	3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB	Interproscan
IPR001783	Family	Lumazine-binding protein	Interproscan
IPR002125	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR002180	Family	Lumazine/riboflavin synthase	Interproscan
IPR002734	Domain	Bacterial bifunctional deaminase-reductase, C-terminal	Interproscan
IPR004794	Family	Riboflavin biosynthesis protein RibD	Interproscan
IPR016193	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR017938	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR017945	Homologous_superfamily	DHBP synthase RibB-like alpha/beta domain superfamily	Interproscan
IPR023366	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan
IPR024072	Homologous_superfamily	Dihydrofolate reductase-like domain superfamily	Interproscan
IPR026017	Domain	Lumazine-binding domain	Interproscan
IPR034964	Family	Lumazine synthase	Interproscan
IPR036467	Homologous_superfamily	Lumazine/riboflavin synthase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21327	GTP CYCLOHYDROLASE II-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000906	Molecular Function	6,7-dimethyl-8-ribityllumazine synthase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008686	Molecular Function	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	Interproscan
GO:0008703	Molecular Function	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	Interproscan
GO:0008835	Molecular Function	diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	Interproscan
GO:0009231	Biological Process	riboflavin biosynthetic process	Interproscan
GO:0009349	Cellular Component	riboflavin synthase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-