Detailed information of KAK2143892.1 in Paralvinella palmiformis Gene info
Gene IDAnnotationContigStartEndStrand
KAK2143892.1COLLAGEN ALPHActg803_pilon3319659518+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF06482EndostatinCollagenase NC10 and EndostatinDomainInterproscan
PF20010Collagen_trimerCollagen trimerization domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR010515DomainCollagenase NC10/endostatinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR045463DomainCollagen type XV/XVIII, trimerization domainInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP