Gene detail

Detailed information of KAK2141975.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2141975.1	METHIONINE--TRNA LIGASE	ctg1010_pilon	117992	149045	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2141975.1

ATGCCAGTATGGGCAGCAAGTTACAGTTTGTGTGCTAACGCTGTCACATGTCGGTGTTTACCTGTTGGCCTGCAGTATAAAATCTCACAAGACAGGTGCAGGTATATTTTAGAAGATCACACTAGTACAGGACAAGGTGGTTTGACAACTGTTATAGATGAATGGTTAGAATGGGAGGCTACACAGCTGCAGCCGATGATACAGAAACTGTGCATGTCACAGACATCAACCGGCAAAGTGACACAAAACTTGGAGACTGAGCTAAAAAGATTACTGAGTCATTTGGATAACTCAACCAGAAACAATCCTATAGGATTGACAGGGTCTGATATATCTGTTGCTGATATTGTCATCTGGTGTAGCCTGTTACCTTTATTTTGTCATGAAACACCTTTTACAGATGTAGTTTCTGGATATTCACACTTGCAAGAGTGGTTCCAGAGGATACGCCAGATGGCACCAGCGTCGGCAGCATTGAAACAGCTGAAGGGAGATTTGTCATTCAGAGAAATCAAGATGTCACTGCAAGCTCAGCCATTGTTCTACCAGTCCTCTGATGGCACAAAACAGACTACGACGAGTCACGCTGTGGATTCTTCGGTCACTTTGCCATCGGTTAGTGAAGAAGAAACCAGAAAAGCAGAAGCTGCATGGAATTCACCAAGTGATACAGTTCCCATACTAAGGAGAAGAGAAGTACCAATTTTACCAAAAGATGGAGAAAGGAACATTTTAATCACGAGTGCCTTACCCTATGTGAACAATGAACCTCATCTTGGTAATATTATTGGCTGCGTTCTCAGTGCAGATGTTTTTGCCAGGTTTTGTCGGTTGAGGAACCTTAACACACTCTATGTCTGTGGCACAGATGAATATGGTACAGCAACCGAGACCAAAGCTATGGAAGAAGGCGTCACGCCGCAAGAGATCTGTGACAAATACAACAGACTGCACACGGAAATCTATAAATGGTTTAACATTAACTTCGATTATTTTGGCCGCACAACAACACAAGCGCAGACTGAAATAGCTCAGGAAATCTTCTGGAAGCTTTACCATAATGGTTATATATTGAAGGATAGAGTGGAACAGCTGCAATGTGAAAAGTGTAACAGATTCTTAGCTGATCGATTTGTTGAAGGTATTTGTCCTTTCTGTATGTACGAGGATGCTAGAGGTGATCAGTGTGATAAATGCGGTAAGCTGATCAATGCCGTTGAGCTGAAGGAGCCCCGATGTAAACAGTGTAACAGCAGGCCTGTGATTAAAACATCACATCATCTCTTTATGGACTTACCTAAGCTCCAGCCACTGCTAGACTCGCACCTAGCTGAGAATTTTGAGCATGGATTATTCAGCTCTAACTCCAAAATCATCACAAAGTCCTGGCTCCGAGATGGGCTTAAACCAAGATGTATTTCGAGAGACTTAAAATGGGGTACACCTGTACCACTGGAGGGGTATACCGATAAAGTGTTCTATGTCTGGTACGATGCACCAATTGGATACATATCAATAACAGCCAATTATACTGACCAGTGGAAACAGTGGTGGCTGAATCCAAACAAGGTGGAGTTGTTTAACTTTATGGCTAAGGACAATGTGCCATTTCACAGCGTCATCTTTCCTTGTACACTTCTGGGTACTAAAGACAATTGGACTGTAGTCAATAACCTGAGTGCCACAGAATATCTGAACTACGAAGATGGAAAGTTCTCTAAGAGTCGAGGCGTTGGTGTGTTTGGTCGCGATGCTAAGAATACGGGTATCCCAGCTGATGTTTGGAGATTCTATCTGCTGTATCTTAGGCCAGAAAGTCAGGACAGTGCCTTCAGCTGGGATGACTTCTTGTTGAAGAACAACAGTGAGCTGCTCAATAACCTTGGAAATTTTATTAACAGGGCACTGATGTTCGTCAGCAATAACTTCGCTTCTTCTATTCCTGATATGGTGCTGCAGCGTGAAGACAAGGAGTTATTAGCTTTAGTTACCAAAGAGTTAAATTTGTATATCGACAATCTGGCCAACATACGGCTGAGAGATGGTATCAGAAACATCCTGACTATTAGTCGCTATGGTAACCAATACATTCAAGCACACAAACCATGGGTCAAGGTGAAGGGCACAGAGATAGAGAAGGAGAGAACAAAACGCATCAATGTGCTAAATTCTGCCGCGATGTTAGTGGTTTACGTTGATGTTCCAGACGATGCCACAAAGACATTCTGCCACAGTCTTACGACCCTCGGTACGATCATTAGGCACAGGGCTCGTGCTGGTACAATTGTTGGTTTGGCAGCTAACATCGCTTGTTTGTTGTCAGTACTGGTACAGCCATACATGCCTGAAGTCAGTAAGACCATCCAGACACAGCTTAATGCTCCGCCCAGTTGTAACATCATACATCATGAGTTTGTGCCACAGCTACTACCAGGACATCGAATTGGCAAGCCCAGTCCACTCTTCCAGAAGATAGAACCATCCACAATAGAGTCGTTAAAACAGAAATTTGCTGGCAAGCAGCTACCATCTAAAAAGACTTCAGTTCCTGTTGGTGACCCAAATACAATATCCAGGCTAGAGAAGGCCGTGGCAGAGCAGGGTAATGAAGTGCGACGTTTAAAGTCAGAGAAGAAAGATAAAAGCGAAATAGAACCAGCAATTGCAAAATTACTTGATCTCAAACAACAGCTAGCCACAGCTCAAGGATGTGATCCAGGTACAGTGACATCTGGTGGGAAAAAAGACAAGAAGAAAAAGAAGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00043	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF00458	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan
PF09334	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF19303	Anticodon_3	Anticodon binding domain of methionyl tRNA ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000738	Domain	WHEP-TRS domain	Interproscan
IPR001412	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR004046	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR009068	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR010987	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR014758	Family	Methionyl-tRNA synthetase	Interproscan
IPR015413	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR023458	Family	Methionine-tRNA ligase, type 1	Interproscan
IPR029038	Homologous_superfamily	Methionyl-tRNA synthetase, Zn-domain	Interproscan
IPR033911	Domain	Methioninyl-tRNA synthetase core domain	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR041872	Domain	Methionyl-tRNA synthetase, anticodon-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45765	METHIONINE--TRNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004825	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006431	Biological Process	methionyl-tRNA aminoacylation	Interproscan
GO:0017101	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-