Gene detail

Detailed information of KAK2141493.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2141493.1	SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN	ctg1091_pilon	56733	59681	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2141493.1

ATGCTTCAGTTAAATAACATCTCCAAAATATTTCATCAAGGAGCTACAGATATTGTCCATGCACTATCGGATGTTTCCCTGCATGTGGAGGAAAGAGATTTTATTACTGTAATAGGGAGCAATGGAGCAGGGAAGAGTACGCTATTGAATATTATTGCTGGCACAGAATTCCCTAATAAAGGAAATATTCTTTTTCAAAATAAAGAAGTTACCTCCTTTCCCGAGTATAAGCGGGCTCAATTTATCGGACGAGTATTCCAAAATCCAGTACTAGGAACCGCAGCGAACATGTCCATAGAAGACAATATGACACTTAGTATGCGTAAAGGAAGAAAAAAGCTTACTATCAGTCTTGATTCAAAAAGGAGGACAGAATTTGCTCGATTGTTAGCAAGTCTTGAAATGGGGTTGGAACATCGCATGAAAGAAAACACTGGCTTGCTTTCAGGGGGACAAAGGCAAGCATTAACTTTGTTGATGATGGTACAGTCCAATCCGAAGCTGGTCTTGCTCGATGAACACACTGCGGCACTTGATCCAGCTAATGCAGAGAAAATTCTTGCACTCACGCTTGAATATATCAAAGAAAAGTCTTTGACTACAATCATGATCACGCATAATATGCACCAGGCAATACAACTAGATTTTCATCTACGAGCACAAGGAACCTATGCATATCGCGTATCCGATACATATGGGGGACTAAAACGATTTGTGGCGCATATAAAAGCATTACCATTTGCAGCAGATTTACTTGTTGTTACCGGAGATCTTAGCGATGATGGAAGTATTTCTTCTTATGCTTTAGTTAAAGATCAGTTACAGAGTTTAAATATTCCCTATTATATTCTCCCTGGGAATCATGACGACCTTACTTGTATGTGTGATATGTTTGACGATACAGCTCCGTATCTTCGTTTCATGCGTAAACCAGGGGCAATTTATTCATTTAATTATAGTGGTATACGTATGATTTTGCTCAACTCTGCACATAGAGGTATGCAGGGAGGAGAAGTCTCAGATGAAACGTTAAAAGACTTGACACAGTTATTTAAGGGGGAGCAGTATAATATTTTATTTTCACATCATCCTCCCTGTAATTCGGGAATTGGGTTTATGGATGCTAGTGGATACAAAAACAAAGAAGCTTTATTACAGATTCTGTCACAAACACCACGATTGCTTTTTGTTGCTTGTGGACACATTCATCGTGCGATATCAGCGACAGTAGCAGCTACGCATATACTTGTTGCTCCATCAACCGCAATGCAACTTCATTTAAATCTGACGCAACAGGCCCCAGTTATTTTTTTCATCACGCCAATGTTTCTATTTGCTACGGGGAGTAATGAAAAAGAAGGTAAAGTATTGCGTATTCTTACGTGGGAGGGTTATGCACCTGCAGAACTTGTGGAGAAATTTCGCAATGAGACAGGAATAGATGTAAAACTTGCCTATGTAGGAGATAACAATGAGCTTATTGCGAAACTTGCAGCAAGTAAAGGGTCTGGGTTTGATCTTATTCAACCTACATCTAATTGGGTGCTTACGGCGGAAAGTCAGTATGGTGTGTATCAGGCAATTGATCTAGGCAAAATAAATACGGATAATATTGACGTTGATCTTTTGAACGCAGTTACTGATGCTACTACGATTAATAATGAGCAGTTTGCAGTTCCTTTTTGTTGGGGAACTACTGCTTTGGCGGTAAATACTAAGTATGCACCAAAAGCAGGGATGACCTATAAGGATTTGTTAAATTCTCAATATGCGGGGCGTATTAGTTATCGTTCCAAGTATGATACGTTTTATATGATAGCGTATGCGTTGGGTTTAGATCCTCGCAAAGCATCTGCGTCTGAGAGTGAATATCGGTCAGTAATGGAAAAGGTATTAAACAAGCTTATTGAGACAAAGAAATATGTAAAGACCTATTGGGGGTCACGACAGGAACTTGAAGAATTACTTTCACGTGGAGAAGTGTGGGTGGCTTCGGCATGGGATGCGATAGGATGGTCGTTAGCTAAGACTAATCCAGATATAAAGTACATGATTCCTGAAGAAGGAGCCATGGGATGGATTGATACGTTTGCGATCTCAAATGAGGCAGAAAATATTGATGAGGCTTATGCGTGGATTAATTTTATTATGATGCCCGAGAATGCAGCAGTAATTACGAGTAAAACTGGATATCTTGTTGCCTCAAAAGGATCTTTGGAATTAAGCTCTCCAGAATCCAAGAAGTTATTCGAGGAAAGTTTTTCACCCGAAAATATCAAAAATATTAAATGGTATTTCGCGCTACCTGAGTATGCAGTTGATATCGAAGCTGATGTACAAGAACGTCTAAAAGCAGCCACTGGAAATTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF13416	SBP_bac_8	Bacterial extracellular solute-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001188	Family	Spermidine/putrescine-binding periplasmic protein	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR006059	Family	Bacterial-type extracellular solute-binding protein	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR042281	Homologous_superfamily	GpdQ, beta-strand dimerisation domain	Interproscan
IPR042283	Homologous_superfamily	GpdQ, catalytic alpha/beta sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30222	SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0015846	Biological Process	polyamine transport	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0019808	Molecular Function	polyamine binding	Interproscan
GO:0042597	Cellular Component	periplasmic space	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-