Gene detail

Detailed information of KAK2139876.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2139876.1	HELICASE WITH DEATH DOMAIN-RELATED	ctg1581_pilon	6125	30411	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2139876.1

ATGAAGTTAAACGTCAGTCCTTACAGAGTAATGCTATATCGAATAGCGAAGGAAATAGGAGACAAAGAATTGGAGGAGTTGAAAATGTTATCTCCAAAAATTGATAAATCAACGTTGGATGATGTAAAGACGCCGTTGGATCTGTTCGCAACTTTAGAAAGAAAAGGCGTCATAAACGAAAGAAATGTAGATTTTTTGAAAGAGGCACTCAACCAAATCGATTATAAAAAGTTAGCCAAACAAATAACTGATTACAAGGATAAATATTTATCGATGGACACGCGTTGTGATACTGAGCCTTACCGTGGAAGTAACCATCCTGAAATCCAAAGGCATGCATCTGGCAATAATTCTGAGCCCATCGGACAAACGTCACTAAAGACATCCGCCACTAACCATCATTCAGCAAGTCTACAAACAGCCAATGTCTTTGCTCGCAATACTGCAACCAGTTTAGCAAGTTCCAGGCAGGAAATGGTTGTAAAAAGTTTAGATATCGGACCCAGAGCTGCATCAGTAAATGATTCACAGTTTGAAATACGTATTAAAGATTCAACACATGGTGAACATGGAAATGATGGCTCAAACATGTTACCCAAATTTGATTCTTTAATTAGTGATTCATCAGCTATACAAAATAGCAATCTGCCAAGTGATGGTCATCGACCAGTAGCTGCTGTCGTGCCAGTATTGGGTCATGCTGAACCATCATTGGTACTAAATGCTTATGATCTGGATCAGACTGATCCTAAAAGATATTGTGAGGGGTTTGATTCCACCAAACCAAAGCAAATAAGGATGGATGAGTCAGTTGAGAAGAACCCAGCTGATGACAGTATTGCAGATCAGAAAGCATCCAACAAAGAGAAGATGCTCCAGCAAGCAATAAAACTGAAATCTCAACAACAGCTGGAACTGATTAGCAGTGTGAGAGCTGAAGATGATCGAAGTCTGTTTTCGTTAAATGGGAGTACTACAGGTGGCCAGGAGAAAATCCAAAAAGATGGCAAGGGGGCTGAGGCAAAGTCAGCTGATGTGAAGCAGTACTTGAGCCAGCTTCATACGGATTCTCCAAGTTTGTGTTTGAGACCAGAACATAGTGGTTACAGATCTCAAACTGACAAACTATCAAGACACCAAACTGGAAAACTGTTGCTTCATGAAGGACGATCAGTTAAATCAGACCATCCAGAAGCAATACACAAAGAGTCATGTCAGCCATTTAAATTGTCCGGTTACCAAAAGGAATTGGCTGCTCCGGCTTTAGCTGGCTATAATAATTGTATCATGTGTGCTCCAACAGGAAGTGGAAAAATGCTCGCTGCTGCGTACATCTGTTGTCAAAGGCTTCAAGAAGCTTTGGATAAAGGGAGACAATTCAAGGCTTTGTTTACTGTGTATGCTGATACTCATATCAGTCAGGTGAGGGAAAGGATTAAGGAGATGCTTCCTGGTGTTAATGAAACCCACACACTAAATGACATACTTAAACGTCACGACATCATCGTGCTTACTGCAGAAATGCTTGTGAATGCATTGAAGAAAAATCTAGTTGATTTGAGTGAGATTCAGCTCCTGATTCTTGACGAATGTCACCGTACAGATGGCAGCCATCCATACAGTGTTGTTATGAGGGAATACTACAGGCTGAAGCTGGTGAATCACTCGGTGCCACAAGTAATTGGTTTAACAGCAACACTTGGGATAGAAAACATGAATGACCTCAAGGAACGCTACACAAATATTTGTGCGAATTATGACTGTAGAGGCATCACTTATGTCAGGGACAACAGAAGTGAACTTCTTCTGAATAATCGTCATCCGAACAGGTGCCAGATCATTAGCGTATTGTCCCGCGACTGCAATGATTTGTTTAATCTGATCATAACTTTCATGATGAACGAAACTGAAAAGCTTACACCCGATCTGACTGTCACTAAAAAACGTGGCTCGCTGGAATATGAGAAAGAGATTCAGACGCAAACCAATGCCGAGAAACAGCAGACAAAAGATTACATGTTCTGCCGTCATATGTTACTTGAATACAACACTGCCTTGATGTACTGTGATGAGCTGCAAGTTGTAGATGTTATGGCTTTCCTAAAGCAACAATTCAATGAAGCTAATCGAGATCCTAATCCAACAACAGTCCAAAAGAAGATCTATGAATTTTATGACAGCCATTTAAATGAGATTGAAACATATGCCAAAAAAGAAACCCTTGCAGAAAATGAGAAATTGATGAACCTTCATAATCTGCTCGCTAATTTGTTTTCTGACAATCCAGAATCAAAAGGTGTTTTGTTGACAAAGACAAGTTTTTGCGCAGAAGGGCTTATATCCTTTATTACAAGAAGTGACTTGCTTAAAGATTTTGTGAAGTGCTCCATGTTTAATGATTCTGTGTTGGCACAATTTAAAGCCGATTCCACTGAAGAGAATCACACCAACTTGCTGTTTATGACTGAAGAGTGTAGCATTATGCCACCCTGTAATTTTGTTGTCTACTACAATATTGTACCCAAGAAGATTTGGCCGGTGCTGTCACTTCTAGTAAAGAAAAGTAAAGTCTACCTGATTGTTAACAAGGGTTTAGTGGATGAAGACAGAGAGTTTCGGGATCTTGAAGTAGAACATGCACTGATGGGATGTTTGAATAAAGTGGCAAAAGATGACTTGGAGCAAGTAATTGTTACGTTAAAGAGACAACTGTGGCCAGAGTCTGAGGAACAGCTCACTTCATTTAGCGCTTTTGATATCACTGATATTACTATACACTGCAAAAGATGTAAGCAGCTGTTGTGCTGTGCCACTGATCTGCGACAGCATAGACCCCTTGTTATCATATCTTCTACTGAATTTGACAGAAAGATCAGTGTCCAGAAAAGCTATGAATGCAATAAGCTAGTTGCCTATGCATTCTGTAATGGACCATCCTGTAACTGCCAGCTTGGAACTAGGTTTGTATGCAACAGTGAGGCGTCCTATGGGTATTCCCTAAGCAAGGATGCTGTTGTGTGGAAGAAATCAGGCCTGAATCAATACAGAGATATAAAACAGTGGTTAAAGGTGCCTTTCTCTATTAAAGAAGAGCCTGTTAATAAATGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF01335	DED	Death effector domain	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001875	Domain	Death effector domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-