Gene detail

Detailed information of KAJ8418887.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8418887.1	PHOX (PX) DOMAIN-CONTAINING PROTEIN	AAFF_1.1_unplaced_1	15277343	15304418	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00003860

ATGAAAGAACGGGGGGAAGCTGATATTCTCGGTTTCCCCCCCACTGCTAGCGCTACGAGGATCATGGAGATTACTGAGGCAGAGGCCGGGGAACGCAGgcGGGAGCACTGGAAGCTGCTGTCCAGTCTGAAGACCACGGTGGAGGGGCTACTGTCCACCAACAACCCCAACGTCTGGTCCCGATACGGGGGTCTGCAGCGACTGCACAAGGACATGAACAACATCCTGAGCCATGGCCTGAAGCACGAGCAAGTGTACTGCAAACAGAAGGATTACTGGCGCTTCGTCTGGTGCGTGCGCTACATCAGCCCTCACCTAGCTGCTCACGTGGAGCAGTTCAGCCAGCTGGAGCCGGTCCTGACCTCTGGGGTGCAGAGCGCTGGGGAGGGACACAAGGCCGAACGCTGGCTGCTGCACAGCCTGCAGGTCCACTGCCTGTCCCCCCAGCTGCGGCCACTGCTCAAACACGAGTCAAACACTCGCAAGTACTACAACGatgAGGCATTTGTGCTGAGTGAGCCCCATGTCTCGGCCATGTTCCAGTGTCTGGAGGCCGTGGAGCAGAACAACCCGCGACTACTGGCCCTTGTGGACACGGTCCGGctgtCTCACCTGAAAGAGCCAGCGCTGGGCCTGCTAAAGTGCCAGAGCCTGTGTCTGCTCCCAGGGGCCCGAATCAGTGGGACAGGGCCCCTCAACACCCTGCCCCACCGCCTCACCACTTCCCAATCCTCCCTGCGGAACCAACACTCGGATGCCCCTCTCTCGCACGGGCCCCTGGGGGCCCCCTGGGAGTGCACAGGGGCAGATCGGGGGCAGAGCCCCGTCCCCGACAGGGACGGGACTGACCCGGGGGACGGAGATCTGGACGACGGGCCCGAGTACCTGGCCATCGGCAACCTGGGACAGCGGCGACGCGACTCGACCAGCTCCTCCAACCACAGCGACGAGGGGGAGGCCACGCCCACGGCCGCACCCACTCCGCGCCGCTCCTCCTACTCCGAGGGCCAGGGGGGGCCTGGGCGAGGCTGCAAGGGCCACACCCGCTCGCTGTCTGACACGGGGGTCGCGCAGAAACACAGTCACGaGTCTGCTGCAGACGTGTGTTGTGTGAAAGAATATGGACCCTTCTCATCCCAGAACAGTGAGACCAGCACCCCTAGCTCCCTGTACATGGACTCCGATGGCTCGCAGCACAGCAGCATGTCGGACGGAATGTTCCGGAAGCCTTCGGAAGGCCAGAGCCTCATCAGCTACCTCTCGGAGCAGGACTTCGGGAGCTGCGCCGACCTGGAGAAGGAGAACGCCCACTTCAGCATATCGGAGTCTCTGATCGCCGCCATCGAGCTGATGAAGTGCAACCTGCGCAGCCGTGAGGACGGGGATGACGAGGACGACAGCGACTGCGAGatccagcagctgaagcagaaGATCCGCCTGCGCAGACAGCAGATCCGCCGCAGCCGGCTTCATCCACATGCGCAGTCgcaacgcgCGTTCACTTCCACAGACAGTGGGGGGTCTGGGCATAGTTCCCATGATTCCTTGCACCTGTCGGACTCCGGGTCAGCCGAGGAGGTGGAGCACTGTGACCTGACAGATTCAGATATTAAGCGCAACGTGACCTGCACCAGCAGCAGATCATTCATGAGCTCCGAGTCAATaagcCAGTCTTTCCTGCAGTCTAACTCTGCTGAGTCGGTGGCCATGGGGCTCCTCAGGCAGTTCGAGGGCATGCAGCTCCCTGCTGCTTCTGAGCTGGACTGGCTGGTGCCAGAGCAGGATGCCCCACAGAAGctcCTGCCCATCCCAGACTCCCTGCCCATCTCCCCTGACGACGGTGAGCACGCAGACATTTACAAACTGCGGATCCGGGTCCGAGGGAACCTGGAGTGGGCCCCGCCTCGACCCCAGATCATCTTCAACATCCACCCTGCCCCCAAgagAAAGGTGCTAATGACGAAGCAGAACTATCGCTGTGCAGGGTGTGGCACCCGCATTGACCCAGATTACATTAAGAGACTGCGTTACTGTGAGTATCTGGGTCGCTATTTCTGCCAGTGTTGCCATGAGAACGCCCAGGTGGTGGTACCTGGGCGGGTGCTGCGGAAGTGGGACTTCAGCAAATACCCTGTCAGCAACTTCGCCCGAGATCTGCTGGGTAAGATCGCCGGTGACCCCCTCTTCAACCCCAACGACATCAACAGCGGCCTCTACAAGAAGGTCAAGGCACTGGAGACAGTGCGGCTCTTGAGGGTCCAGTTGTTCCACATGAAGAACATGTTTAAGACTTGCCGCTTGGCTAAAGAAGTTCTGGATGAGTTTGACACTCTACGAGAGCTGCTGCGTTTGGGTTCCGTACATGTGGCCGGCTGTGTGCTCTGCCAGGCAAAAGGTTTTGTGTGCGAGTTCTGTGGCAACGACAAAGACATCATCTTCCCCTTCGAGCTGAACAAGTGCCAGAGATGTGAAGACTGCAAGGCGTGTTACCACAAGACGTGTTTCCGGGGGCGACGGGAGTGCCCGCGGTGCCAGCGGCtggcagagaggagggagaggctgGCGCGAAAAAAcatggaggagcaggaggatgagggagggggcggggcggggtcaGAGCCCTGCTGA

Transcript

AAFF_T00003860

TGGGATCTGTAAGCAGTGTCAACACAGAGCAATCGCAACAGGAGGGGTGGTACTCCGTTGGTGTAGTCTTGACACTGACAGCGGAGAAAATGTCAGGGAAACTCCCCGCATAAGACATAGTTGGAGCCCATGGTCGTGGCGGGAATCAAGTGGAATAAATTGAGTTTGGTATCGCCTTTCGCGGAGTTTTGGCCCGGTTGATGAAAGAACGGGGGGAAGCTGATATTCTCGGTTTCCCCCCCACTGCTAGCGCTACGAGGATCATGGAGATTACTGAGGCAGAGGCCGGGGAACGCAGgcGGGAGCACTGGAAGCTGCTGTCCAGTCTGAAGACCACGGTGGAGGGGCTACTGTCCACCAACAACCCCAACGTCTGGTCCCGATACGGGGGTCTGCAGCGACTGCACAAGGACATGAACAACATCCTGAGCCATGGCCTGAAGCACGAGCAAGTGTACTGCAAACAGAAGGATTACTGGCGCTTCGTCTGGTGCGTGCGCTACATCAGCCCTCACCTAGCTGCTCACGTGGAGCAGTTCAGCCAGCTGGAGCCGGTCCTGACCTCTGGGGTGCAGAGCGCTGGGGAGGGACACAAGGCCGAACGCTGGCTGCTGCACAGCCTGCAGGTCCACTGCCTGTCCCCCCAGCTGCGGCCACTGCTCAAACACGAGTCAAACACTCGCAAGTACTACAACGatgAGGCATTTGTGCTGAGTGAGCCCCATGTCTCGGCCATGTTCCAGTGTCTGGAGGCCGTGGAGCAGAACAACCCGCGACTACTGGCCCTTGTGGACACGGTCCGGctgtCTCACCTGAAAGAGCCAGCGCTGGGCCTGCTAAAGTGCCAGAGCCTGTGTCTGCTCCCAGGGGCCCGAATCAGTGGGACAGGGCCCCTCAACACCCTGCCCCACCGCCTCACCACTTCCCAATCCTCCCTGCGGAACCAACACTCGGATGCCCCTCTCTCGCACGGGCCCCTGGGGGCCCCCTGGGAGTGCACAGGGGCAGATCGGGGGCAGAGCCCCGTCCCCGACAGGGACGGGACTGACCCGGGGGACGGAGATCTGGACGACGGGCCCGAGTACCTGGCCATCGGCAACCTGGGACAGCGGCGACGCGACTCGACCAGCTCCTCCAACCACAGCGACGAGGGGGAGGCCACGCCCACGGCCGCACCCACTCCGCGCCGCTCCTCCTACTCCGAGGGCCAGGGGGGGCCTGGGCGAGGCTGCAAGGGCCACACCCGCTCGCTGTCTGACACGGGGGTCGCGCAGAAACACAGTCACGaGTCTGCTGCAGACGTGTGTTGTGTGAAAGAATATGGACCCTTCTCATCCCAGAACAGTGAGACCAGCACCCCTAGCTCCCTGTACATGGACTCCGATGGCTCGCAGCACAGCAGCATGTCGGACGGAATGTTCCGGAAGCCTTCGGAAGGCCAGAGCCTCATCAGCTACCTCTCGGAGCAGGACTTCGGGAGCTGCGCCGACCTGGAGAAGGAGAACGCCCACTTCAGCATATCGGAGTCTCTGATCGCCGCCATCGAGCTGATGAAGTGCAACCTGCGCAGCCGTGAGGACGGGGATGACGAGGACGACAGCGACTGCGAGatccagcagctgaagcagaaGATCCGCCTGCGCAGACAGCAGATCCGCCGCAGCCGGCTTCATCCACATGCGCAGTCgcaacgcgCGTTCACTTCCACAGACAGTGGGGGGTCTGGGCATAGTTCCCATGATTCCTTGCACCTGTCGGACTCCGGGTCAGCCGAGGAGGTGGAGCACTGTGACCTGACAGATTCAGATATTAAGCGCAACGTGACCTGCACCAGCAGCAGATCATTCATGAGCTCCGAGTCAATaagcCAGTCTTTCCTGCAGTCTAACTCTGCTGAGTCGGTGGCCATGGGGCTCCTCAGGCAGTTCGAGGGCATGCAGCTCCCTGCTGCTTCTGAGCTGGACTGGCTGGTGCCAGAGCAGGATGCCCCACAGAAGctcCTGCCCATCCCAGACTCCCTGCCCATCTCCCCTGACGACGGTGAGCACGCAGACATTTACAAACTGCGGATCCGGGTCCGAGGGAACCTGGAGTGGGCCCCGCCTCGACCCCAGATCATCTTCAACATCCACCCTGCCCCCAAgagAAAGGTGCTAATGACGAAGCAGAACTATCGCTGTGCAGGGTGTGGCACCCGCATTGACCCAGATTACATTAAGAGACTGCGTTACTGTGAGTATCTGGGTCGCTATTTCTGCCAGTGTTGCCATGAGAACGCCCAGGTGGTGGTACCTGGGCGGGTGCTGCGGAAGTGGGACTTCAGCAAATACCCTGTCAGCAACTTCGCCCGAGATCTGCTGGGTAAGATCGCCGGTGACCCCCTCTTCAACCCCAACGACATCAACAGCGGCCTCTACAAGAAGGTCAAGGCACTGGAGACAGTGCGGCTCTTGAGGGTCCAGTTGTTCCACATGAAGAACATGTTTAAGACTTGCCGCTTGGCTAAAGAAGTTCTGGATGAGTTTGACACTCTACGAGAGCTGCTGCGTTTGGGTTCCGTACATGTGGCCGGCTGTGTGCTCTGCCAGGCAAAAGGTTTTGTGTGCGAGTTCTGTGGCAACGACAAAGACATCATCTTCCCCTTCGAGCTGAACAAGTGCCAGAGATGTGAAGACTGCAAGGCGTGTTACCACAAGACGTGTTTCCGGGGGCGACGGGAGTGCCCGCGGTGCCAGCGGCtggcagagaggagggagaggctgGCGCGAAAAAAcatggaggagcaggaggatgagggagggggcggggcggggtcaGAGCCCTGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02759	RUN	RUN domain	Family	Interproscan
PF13901	RH_dom	Rubicon Homology Domain	Domain	Interproscan
PF21054	RUBC_PIKBD	Rubicon, PI3K-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004012	Domain	RUN domain	Interproscan
IPR025258	Domain	Rubicon Homology Domain	Interproscan
IPR037213	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR048569	Domain	Rubicon, PI3K-binding domain	Interproscan
IPR052428	Family	Autophagy and Host Defense Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45971	PHOX (PX) DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0043553	Biological Process	obsolete negative regulation of phosphatidylinositol 3-kinase activity	Interproscan
GO:0045806	Biological Process	negative regulation of endocytosis	Interproscan
GO:1901097	Biological Process	negative regulation of autophagosome maturation	Interproscan
GO:1901981	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-