Gene detail

Detailed information of KAJ8418701.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8418701.1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1	AAFF_1.1_unplaced_1	6830217	6926973	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00002000

ATGGAGAGAAGGACTTCGGATAAAAGAAATGCAGCACTTCCACCTGAACGTGGACTGTACAACAACAAGCCACTTGTGCCTCAGCTGCGCTCTAAATATGCAGAGAAGCCGTGGAAAGAGACCTTGCAGCTGGTTCGCAGGTGCATGgATAAACCAAAAGGTGGTTCCAAATCCAGTCTGCTGTTTTTGAATTGTTTGGGGAGACTCCATGAAGCACTGAAtgTGTCGTCCTTGACTTCAATGGTATCCAGATTAGAGATGATTGCAAAACAGAGAGGGCTGGGGTCACACCTGAGCCCCACAGAGACGACCTGCTACCTGACCTCTGACATGTTCTACCTGGAGGTGCTTCTGCTACCTGGTGGTGGTGTGGAGGATGTCAAGGTGGCTCATCATGGAGAGGCCCCTGTGTCCTGTGATCCACTTCTTAAACTTCTCAGGTCAAAGGAATTTGACGACTTCTCAATGAAACTGGACTGCCTGTCTTCTCTCTACAACATACCTGGAGACGAtgaaaccaaaataaaggtatACGCCGCCCTTCAGCACCTGGAAACGGATCTACTAAAGATTTCTCAGCTACCCAGATCATTAATAGACCGTGATCTTCGTGTGGACATGGTTCTCAATGGAAGGATTGGGAATGTCACCCTACGGAGAGAAGGAAATCCTCTGAGTATTCAGTACTACATCAGCCCTTATGATCGTCTGGCAGAGAATGCAAATGGAGAGAAGTGCAATAGTGGGCAGGTGGCTCTGCTGACGGCAGGACCAAGTGACTCCACACACAGGCTGCAGAAGACATCCCTCATCCCAAAGCCCCCTGAAATCAACTCACAAGGTCTCCCAGTGTTCAGTGCCCTGGACAATGTGACTAGTGAAGTCCTGCCTGCATGCTTTTTCCTCAAGCTGCAACCACCTTTACCAATGCTGTCATCCTTTATCAACAAAGTGCACCAAATTACTGAGCTGAACATGCGTAAAGCTGACCTGCAGTGGCTGCCCTTGCCCCGGTTGTTGGAGACCAGCCTGAGAGACAACGGCCACTCTGAATCTTGGGAAGGGGAGGATGCCCACTTCTTGGTGCCTCTTCCAGAGAACCAGACACATGGCTATGTGCTGACAGGGGACATGTGGGACATGGCCGCTCTGAAGGGGGCATTGGTGCACAGTGTCCCTTTTACCCACCCCGCCCACATCCCTGCCCTGCTGGAGCTGCTGAGACACCAGGCTGCACTTAACACTTTGCTTGCCAGCTGCATCACCTGCCACAGGTCCCGCCCAGGTTCAGAGCTGGACCTACACTGTGAGGTTCTTCCTGAATCGGAGTCCagcttctctgtctctttccctctccctgacAGTGGCTGTCTTGGTGTGCTTTTGGTGAATTTAAAGGACTCCCATCAGATCACCAGCAGGTTGTTTACACCATATCCAACAGATCCCTCCATTGATGCATATATATCTCGAGTCCTGAAGCGATGCATGTCCATTCCTCTGGTCATGAGGGCCGTCTGTAGGAGACTGGCCAGGAAGAGCTCTTCAGTTGCAGTTGCCTCAACTCTAGCAGCTGAAAATGACATGCCTCCAACTGCACCTGCTGTTGTGATGGGTGCGAACAATGGGAAACAGTATGGAAGTGAGGGTAAAGGCAGTTCCAGCATCTCCTCCGACGTGAGTTCAAGTACGGACCACACGCCCACTAAAGCTCCAAAGAATGCGGCTACCAGTGAAGACTCAGATCTGAGCATGCGGACACTGAGCACGCCCAGCCCTGCTCTGATAATGCCGCCCAGCTCCTCCCTTCTGTCACTGGCTTTGGTCAATGGGcgtggctcctcctcctcctctgttaCCGGAGAGACCGTGGCCATGGTACACTCCCCACCTAGCAGCCTGCCCTGCCCCCAGACGAAATCCCGCCGCCTTAAGGATCAGCAGGCACCCATTGACCTCCTCCCGGACCACGCCTTCCTGCAGATCTTCTCCCACCTGCCCACCAATCAGCTGTGCCGTTGCGCAAGGGTGTGCCACCGCTGGTACAACCTGGCCTGGGACCCTCGGCTGTGGAGGACCATCCGTTTAGCGGGCGACCTGCTGAACGCCGATCGCTCCTTGCGGGTACTGACGCGACGGCTATGTCAGGACACGCCCAATGTGTGCCTGATGCTGGAGACCGTGGTGGTCAGCGGCTGCCGGCGGCTGACCGATCGGGGGCTGCACATGGTGGCACAGTGCTGCCCGGAGCTGCGTAGGCTGGAGGTGGCCGGCTGCTACAACGTCTCCAACGAGGCCGTGTTTGAGGTGGTGTCCCGCTGCCCCAACCTGGAACACTTGGATGTCTCAGGCTGTTCCAAGGTGACCTGTATCAGCCTGACACGGGAGGTATCGGTCAAGCTATCGCCAATGCACGGCCAGCAGATCTCCATCCGTTACCTGGACATGACGGACTGCTTTGCCCTGGAGGATGAGGGCCTGCACACCATCGCCGCACACTGCACCCAGCTGACGCACCTCTACCTGCGCCGCTGTGTGCGACTAACCGACGAGGCCCTGCGGTACCTGGTCATCTACTGCCCAGCCGTGCGAGAGCTGAGCGTCAGCGACTGCCGCTTCGTCAGTGACTTCGGCCTGCGCGAGATCGCTAAGCTGGAGGGCCGCCTGCGCTACCTGAGCGTGGCGCACTGTGGGCGCATCACCGACGTGGGCTTGCGCTATGTGGCCAAGTACTGCAGCCGGCTGCGCTACCTCAACGCCCGAGGCTGCGAGGGCCTGACGGACCATGGCCTGGAGCATCTGGCCAAGAACTGCCCCAAGCTCAAGTCGCTGGACATCGGCAAGTGTCCGCTGGTGTCCGATGCAGGGCTGGAGCTCCTGGCGCTCAACTGCTTCAACCTGAAGCGCCTCAGCCTCAAGTCGTGCGAGAGCATCACGGGCCGTGGGCTGCAGGTGGTGGCCGCCAACTGCTTCGACCTGCAGCTGCTCAACGTGCAGGACTGCGACGTGCCACTGGAGGCACTGCGCTTTGTGAAGCGCCACTGCAAGCGCTGCATCATTGAGCACACCAATCCTGCCTTCTTCTGA

Transcript

AAFF_T00002000

ATTGTTTGCATGTTGCAACTAGTAGAAAATCTGTCAGTCTGTCCGGTCATTCAAGGCAATAGGAGTCAACTGGACAGGGCTGTGCTGCTTTTCTCTTCTCACACAATGCGGATTATCCAAATGACTCCACATGATCTGTGTAATCTTGGGTgcaaaaatgaaaatcaaatcGCACGTTTTGACcaaattttgtatttaaactTGAATCATAAAATTACAAAGAACTTGCACACGTTTAACATGATTGATGTCCACATTAGTTTTccaatgtaattaattaactgccaaTTGGCGGTTAATAAGACAAGTAAATCATTCGGACACACCTGTCCCGGTTTATTTAATTGCTAACAGAATGTACTGGCAATTGTTTCGTTTAGATGGTGGGTTAGGCTACTTGACCAAAAATCTAAGCATAATTCCATAGTCCAGACGAAATGGAGAGAAGGACTTCGGATAAAAGAAATGCAGCACTTCCACCTGAACGTGGACTGTACAACAACAAGCCACTTGTGCCTCAGCTGCGCTCTAAATATGCAGAGAAGCCGTGGAAAGAGACCTTGCAGCTGGTTCGCAGGTGCATGgATAAACCAAAAGGTGGTTCCAAATCCAGTCTGCTGTTTTTGAATTGTTTGGGGAGACTCCATGAAGCACTGAAtgTGTCGTCCTTGACTTCAATGGTATCCAGATTAGAGATGATTGCAAAACAGAGAGGGCTGGGGTCACACCTGAGCCCCACAGAGACGACCTGCTACCTGACCTCTGACATGTTCTACCTGGAGGTGCTTCTGCTACCTGGTGGTGGTGTGGAGGATGTCAAGGTGGCTCATCATGGAGAGGCCCCTGTGTCCTGTGATCCACTTCTTAAACTTCTCAGGTCAAAGGAATTTGACGACTTCTCAATGAAACTGGACTGCCTGTCTTCTCTCTACAACATACCTGGAGACGAtgaaaccaaaataaaggtatACGCCGCCCTTCAGCACCTGGAAACGGATCTACTAAAGATTTCTCAGCTACCCAGATCATTAATAGACCGTGATCTTCGTGTGGACATGGTTCTCAATGGAAGGATTGGGAATGTCACCCTACGGAGAGAAGGAAATCCTCTGAGTATTCAGTACTACATCAGCCCTTATGATCGTCTGGCAGAGAATGCAAATGGAGAGAAGTGCAATAGTGGGCAGGTGGCTCTGCTGACGGCAGGACCAAGTGACTCCACACACAGGCTGCAGAAGACATCCCTCATCCCAAAGCCCCCTGAAATCAACTCACAAGGTCTCCCAGTGTTCAGTGCCCTGGACAATGTGACTAGTGAAGTCCTGCCTGCATGCTTTTTCCTCAAGCTGCAACCACCTTTACCAATGCTGTCATCCTTTATCAACAAAGTGCACCAAATTACTGAGCTGAACATGCGTAAAGCTGACCTGCAGTGGCTGCCCTTGCCCCGGTTGTTGGAGACCAGCCTGAGAGACAACGGCCACTCTGAATCTTGGGAAGGGGAGGATGCCCACTTCTTGGTGCCTCTTCCAGAGAACCAGACACATGGCTATGTGCTGACAGGGGACATGTGGGACATGGCCGCTCTGAAGGGGGCATTGGTGCACAGTGTCCCTTTTACCCACCCCGCCCACATCCCTGCCCTGCTGGAGCTGCTGAGACACCAGGCTGCACTTAACACTTTGCTTGCCAGCTGCATCACCTGCCACAGGTCCCGCCCAGGTTCAGAGCTGGACCTACACTGTGAGGTTCTTCCTGAATCGGAGTCCagcttctctgtctctttccctctccctgacAGTGGCTGTCTTGGTGTGCTTTTGGTGAATTTAAAGGACTCCCATCAGATCACCAGCAGGTTGTTTACACCATATCCAACAGATCCCTCCATTGATGCATATATATCTCGAGTCCTGAAGCGATGCATGTCCATTCCTCTGGTCATGAGGGCCGTCTGTAGGAGACTGGCCAGGAAGAGCTCTTCAGTTGCAGTTGCCTCAACTCTAGCAGCTGAAAATGACATGCCTCCAACTGCACCTGCTGTTGTGATGGGTGCGAACAATGGGAAACAGTATGGAAGTGAGGGTAAAGGCAGTTCCAGCATCTCCTCCGACGTGAGTTCAAGTACGGACCACACGCCCACTAAAGCTCCAAAGAATGCGGCTACCAGTGAAGACTCAGATCTGAGCATGCGGACACTGAGCACGCCCAGCCCTGCTCTGATAATGCCGCCCAGCTCCTCCCTTCTGTCACTGGCTTTGGTCAATGGGcgtggctcctcctcctcctctgttaCCGGAGAGACCGTGGCCATGGTACACTCCCCACCTAGCAGCCTGCCCTGCCCCCAGACGAAATCCCGCCGCCTTAAGGATCAGCAGGCACCCATTGACCTCCTCCCGGACCACGCCTTCCTGCAGATCTTCTCCCACCTGCCCACCAATCAGCTGTGCCGTTGCGCAAGGGTGTGCCACCGCTGGTACAACCTGGCCTGGGACCCTCGGCTGTGGAGGACCATCCGTTTAGCGGGCGACCTGCTGAACGCCGATCGCTCCTTGCGGGTACTGACGCGACGGCTATGTCAGGACACGCCCAATGTGTGCCTGATGCTGGAGACCGTGGTGGTCAGCGGCTGCCGGCGGCTGACCGATCGGGGGCTGCACATGGTGGCACAGTGCTGCCCGGAGCTGCGTAGGCTGGAGGTGGCCGGCTGCTACAACGTCTCCAACGAGGCCGTGTTTGAGGTGGTGTCCCGCTGCCCCAACCTGGAACACTTGGATGTCTCAGGCTGTTCCAAGGTGACCTGTATCAGCCTGACACGGGAGGTATCGGTCAAGCTATCGCCAATGCACGGCCAGCAGATCTCCATCCGTTACCTGGACATGACGGACTGCTTTGCCCTGGAGGATGAGGGCCTGCACACCATCGCCGCACACTGCACCCAGCTGACGCACCTCTACCTGCGCCGCTGTGTGCGACTAACCGACGAGGCCCTGCGGTACCTGGTCATCTACTGCCCAGCCGTGCGAGAGCTGAGCGTCAGCGACTGCCGCTTCGTCAGTGACTTCGGCCTGCGCGAGATCGCTAAGCTGGAGGGCCGCCTGCGCTACCTGAGCGTGGCGCACTGTGGGCGCATCACCGACGTGGGCTTGCGCTATGTGGCCAAGTACTGCAGCCGGCTGCGCTACCTCAACGCCCGAGGCTGCGAGGGCCTGACGGACCATGGCCTGGAGCATCTGGCCAAGAACTGCCCCAAGCTCAAGTCGCTGGACATCGGCAAGTGTCCGCTGGTGTCCGATGCAGGGCTGGAGCTCCTGGCGCTCAACTGCTTCAACCTGAAGCGCCTCAGCCTCAAGTCGTGCGAGAGCATCACGGGCCGTGGGCTGCAGGTGGTGGCCGCCAACTGCTTCGACCTGCAGCTGCTCAACGTGCAGGACTGCGACGTGCCACTGGAGGCACTGCGCTTTGTGAAGCGCCACTGCAAGCGCTGCATCATTGAGCACACCAATCCTGCCTTCTTCTGATAGCAGGTCGCACAAGAGGGTCACACAGGGGAACAACCTCCCGACATCATGCTGTTAAATTCCAGTAATCGGGGGTACTGTGGGAAGGATGAGGAAACAGTGTGCAATACTAGCCTTTTGTTTTATAAGTGCATGACTGGTGGAAAAAAATGCTGTTGTTTCGGATTCACTTACAGGTAAAAGTATTTCTCTGAAAAAAGGGATGTGCTAATATCAGTGTAATGCAATCATTTTATGATAATACTTTTTTCCATCAGACCCTGCCTTTAAATGATCTCTCCACTTCTCTATGCTGTGTGTAAGCATGGTATAcaagggccttttttttgttgcttgaaTTGATCATTGTTTTACTCTAGTGTGTTTGTcttatttttgtgcattttgtgtatTTAGATTGTAAATACTGTTTCTTCATGCACAATATGGCCCATTCACCTAAAACCATTCATGtctaaatattgtaatataagttaaaatatatttttacagtgtTTTGGTCGTCATTATGACATAGTGGCTttctaaaaaaattatgttagcCACTTCTAACACAAAGGCTTGCGCTaatatttacattcaaataatcGCACAAATTCACTCCTTTCTTATAGTAGATTATATAAAATTACAGCTGgtatatttattgttcaatgcCTTCTGATTTTCAGATCATCATTTTCAGATTCACCCCTTGTTAGACAAATATCTCATGACTTGATAACCACAGACAAAATCTCATCATTCAAAAGCTCAAAAAGCTTTAAAGTGATAGCCATTGTTCCTATCTGAAGAAAAGACTAATTATAAAACTGTTTCATCCAATTAGTAACTGTAAATAATTGTATCACTTTGGTTGAACTAAAAAGCAATACTGTTCATATTATTATTGGTGGCACCATTCTTTGATCACTCTACAGTGTTATTTATGGGATCAGAATGTTTGGGAATAGAGGGGTCGCTCAGATCTGGCTGACACATTATTTGAGGTGGTAATGACTAATACCTGATGGATATCTAAAAAGCAGGGATGGCTGCTCATCCTGCTATTCCACTCCTGAGAGGCAATTATTACTATAGGCATTTCACTAAGTATTTCTGTCAGataatgttttttgtcattgttcctTTAACCTCCATATAAATCTCCTTATGGCTGCCCTTAATCTACTCAACTTCAATAGGCATATCCGAGCAGCAATTTTCTCTTAAGGTTCTGAATAGTTTTTTGTTGCTTACACAATTAATCAGGTGTGCAATGAATGTCCCTGCAGACACTCTtccattttttttcttgattATAGTTATAAAATAACTCAAAATCACTTCCAGAATTAAGATCAAGGACAAAGGAAATTTAATGAAAAGCAAATTCCATGTCATTACatctttttgccatttttggcCTTGGTTATTTCTGGAATGTTGATCTCCCTGCTACACTCTGTGTAACTCATTAGTAAAGGGTGATACGTTACCTTAAATCAGAACCAAAGTCAGTACACTGAAAGGAAACCCTTCCTGTGTCATCGTATCATGTACCCTTCCTGGATCACCGATGTCACCGTATCATAAGAAAACTGATAcagtaaaatacacatttgcaatattttattttttagtggTCAGAATCAGTTCAATATGTATGTAATAATTTGTCTTCTACACTTTCCGCCCTGAAGTTAGTTGGACCCATGTATTTCTCAGGGTTTGACTCACACTGCTCACCAGAAGTCACtgaatatataatattgtattAATAATACTTCACTAAAATCATGTACACTGAACATATTCAACAATTTCCAGCCTTATTCTGGAAGCTATGAATGTGTACATCCCCTGTTTGTATTCTGCTAAATACTGTTAATGCaaaacaatgtaatgtaaatattttattttttcttcataaatcCCTAGTGTCACCTTTGTTTATATGGAGATGTGTGTATCTCCAACAGCTTCACAGACAACCACATTCAGTGTGTTCAATTTACTTTAACAGCTTTCTGTTTTgttatacaaaaagcagtatctGACAGGATGTTGtcaatattaaaacaacaagaaaataaac

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10744	Med1	Mediator of RNA polymerase II transcription subunit 1	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR019680	Domain	Mediator complex, subunit Med1	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR051999	Family	Mediator complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12881	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0042809	Molecular Function	nuclear vitamin D receptor binding	Interproscan
GO:0042974	Molecular Function	nuclear retinoic acid receptor binding	Interproscan
GO:0046966	Molecular Function	nuclear thyroid hormone receptor binding	Interproscan
GO:0097067	Biological Process	cellular response to thyroid hormone stimulus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-