Gene detail

Detailed information of KAJ8418556.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8418556.1	PROTEIN DR1	AAFF_1.1_unplaced_1	2111015	2116032	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00000550

CTTAAATTCGCTAGCTTCAAGCTGCTACATTTACACAGAGGACGAAACactaaataatgaattaaacaaCGTATTCATCTAAACGCTAAATTGCTTATACGGcttcaaaataaactatttttttcgTCGGTACCAGTCAAGCTcagctatgttagctagctagcaacagtCACGCCCACAAACGTGGACGgtagtagctagctggctagctagcggTGGAAACATTGCCACCTCTATAAACCTCGCTAGCTagaaagctagctaacaatcaTACGATTTTGTCTTAGCTTTACTCGGCTTCCCGTAGCTTAATCGCGCTCAGTGTGTTATATTGAATGTCATTTATATCGCTGAGGCGTTCGGTCTTTCCGTCCGTTATCCATTATTTTGGGGAAAGCTATGGGAAACGCCGAAGTAGCTAGCGCTAGGGTTCTTAGCTGCTAACTGGTAGCTAACTGGCAACCTGTGAAGTTCCAGCGCAGTTTAATTTCGCTGGCTGACCAGTCACCTCTGACCACTGTGAAACGCTTCGCAGttggttagttagctagctgactgGTGagctagtttagctagctaggttattAGTCGAGGCGTACAAAAACAATGGCCTCTTCGTCTGGAAACGATGATGATCTTACTATACCCAGGGCAGCTATTAACAAAATGATAAAAGAAACTCTTCCTAACGTAAGGGTTGCAAATGATGCCAGGGAACTCGTGGTGAATTGTTGCACTGAATTTATTCACCTCATCTCATCAGAGGCAAATGAAATTTGCAACAAGtctgaaaagaaaacaatttcTCCGGAACATGTTATTAATGCGCTTGAAAGCCTCGGTTTTGCATCGTACATCACCGAGGTGAAAGACGTCCTACAGGAGTGTAAAACAGTAGCACTCAAAAGAAGAAAGGCGAGCTCCCGTCTGGAAAATCTAGGCATTCCCGAGGAAGAGCTGCTCCGACAGCAGCAGGAGCTATTCGCCAAGGCACGGCAGCAGCAGGCCGAGCTGGCCCAGCAGGAGTGGCTACAGATGCAGCAGGATGCACAGCAGGCACAGTTGGCTGCCGCCTCTGCTATTGTGGGGCTCCAGGCCTGCTCCTCTCAGGACGAAGACGAGGAAGATGACATGTAGCTGGTTGGGTGGAGCCAGTTCCACGCCACTGCCCGTTATCTCAGTGAGGCTAACACTGACCCTACTGGCCTCCCCGGCACCTCCATGGGCTAAGACCAGACAGAAAGGCAAAGTTTGAAACCATTGAGGAAGTACATCTGGGCTGGTTTTGGTCCACTtacttttttgacattttgcacCTCAgcctcttttttcattttttgcaacTGTACAAGTTTATCATAGAAATGTCATAGTCATTGTGTGCACGGTTAAGCATAAAACATGGATGCAATGTttaaaagtgaaagtgaaagatGTATTATCCGTGAACTTAGTTATTTTGGTTAAGTAGGAGGGGGAGCTTTTCAACTCTTAGCTACTGCCTCCTTTAAATCAGTTgtatagtgtttttttattagatTAAAGTAATGTCTGAAATTGCAACAAAACATTCTTGCTGAGCCTGGTACTGTTTGTTTTAACCAGGAAAAACAAACAGTACCATTGTTTTCTCCCAAAAGTATTGAAATGGATGGAAAAACGGTTCTTCTTTAATCTCAGTTTTTGATGTATGTGTGATGCAGAGCTTAAACGGGAATACTCAGAGATATCTAGAATATTAAATGTATTCCTTCcctcaatgtttttatttttagtggTGGTCCTGCCTCCTacctgtgaatgtatgggctattctcactttcCTGAGAATTGTAATTTGATCTAATGAAAAAAGATTGACATCTTGATAGCTTATATTTTCTCTTATCACTCCTATCaattgtgaatcaggaaatatATACATTGTCCATTGAAATTCTATAGATATTTCAGAAATCTTGTGCTTTCAGACAACTTTTGGAAGCGgaggaagtctcaacagcaAGGATGCATGTAATTTCATAGGGAATCCCAGAAGCACAGGGCTCATATTTCACATGTCACCTTATTGAAATTTAGGGGCGGGAGATATATCCCCAGGTACGGTGAGAGTAGAAATGGAGTGATTGTCCTTACGCACAATTTTCTTAGTCCCaacaaacttttttgtgttatgtgAAATGAGTCCTGCGCATCTGGGATTCTCTACGAGAATACGCACATGCATGCTGTTCAGACTTCCACCAGTTGTCTGAAATGAGCAGACTTCTGAAAAagagtattttcatggacaatgtatacattgcCCGATTCACAACCAataagtgtcagaaaatattggCCATGAAGGTGTCAAGTTTGTTTGTATTAGATCATATTACAATGTTCCCTTTTAATTCTGAATCGCTTACAGGGCCATGAATATGTATTCaaaatttgatttttaaaatgtacaaatgtaacttttttttggaTTACTTCTAAGTATTAAGTGTGTATGTCCCTTTCAGctttttcctcctctcttcaGTATTGCAGCAAAAAACCATTGCTGCTTTTAGAAGGAAAGCCTATAGGAGATgggaaatacattttgtctGCTAGAAccaaagagagaagaggagggaacCTGCCATTTTATGGAGTAAATGTTTGATTATGGTTGGATTATGTTCCcagtataaaaaaagaaaaggtttggTCTGTACTGTACTTACTGTGCATAAAGTAAACAGTAACTTTCACTTTGTAAACCATTATTTTGATATCTGAGTTTTTTCAGGTGCAATGTATAAAAGTTGCATTGTGAATGTGTGGTGAAATCCAACAAGTGATGATTGGTGACACCCATTCTCATGCCTTCTCATAATTTCTCTCTAAGCAATAAAGTTGACATGTTTTGTAAAGTAAAATGGGTTTTCTTCCTTGGGTCAAATAATTTATCCTACCTACACATATTTGTCAACAGCATTACACCCCTAGCCTCACTTTCGCATATGGAAATGTGTTCAGGTAAACACTTTGAATTTGTGCAGTGTGCGATTTGATAGGTGAATTTGTTATGGAAAGTATCAGATCATTGTGTGCGGCTAGTGAGTTGCCTATGCCAAACTGTATTTTCCCCTTACAATACTCATGTTTTTGATCCTCACAGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00808	CBFD_NFYB_HMF	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003958	Domain	Transcription factor CBF/NF-Y/archaeal histone domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR042225	Family	Negative cofactor 2 complex subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46138	PROTEIN DR1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0017054	Cellular Component	negative cofactor 2 complex	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0140223	Molecular Function	general transcription initiation factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-