Gene detail

Detailed information of KAJ8418408.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8418408.1	UBIQUITIN LIGASE E3 ALPHA-RELATED	AAFF_1.1_unplaced_2	12381287	12422654	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00141170

ATGGTGAAGTCAAACCAGATTAGCCCTGCTGGTCACGAGAATGTGGCATTTGAGATGACTGATGGAGTCGCCACTCAGTCTATACGTTCCATGGTTTCCATGACGTCCGTCACCAGTGTGATGCAGGCAGCGGCCCAGTGGGCCTCCTACGCCCGCGGCCGGTGGAAACGGGCCACGAGTACGCGGAGGAGTCCGACAGGAAAGTCCACCAAGATCAAGTACCAGGGCCTGgctcatgatgatgatgacatcattgaTGGCCCGAATAAAAACTGGGATCTCAATAAAAGGCTGCTGGATCACTTCAGAGTGCTCGACAACAACAACCAAGACACAGACGAGGTGGACCTTCAGTACCTGCATGGCTTGATCTGCGACGGAGCTGATGTCAACTCCGCAGACAAGTATGGACAGACTGCCCTGCATGAGATCTCACGGGCGTGGAACATGGACGTGATGCGATTCTTCCTGGACAGAGGGGCGGATGTGCAGCGGGCCGACTCGTATGGGGTCACGCCTCTCCATGTGGCCGCAGCGCTGGACTATGAGGAGATGATTCACTTCCTGCTGGAGAGGAAAGCGGACGTCGGAGCTCAGACGCAGAAGGACCTGCAGACTCCCTTGCACTTTGCAGCGAAGAACGATGCAGTGGGCGCCATCAAGGTCCTGCTGCAGTTTGGGGCGGACATTACCGCCCGCGACTACAAACGGAGAACCCCGCTCCAGCTTGCTGCTAACTTGGACCGGAGTGAGGCGGCACGGACGCTGATGGAGCTGATGGTAAAGGTTGTGGTGGACGCTGGAGTTCAGGACTCTGACGGACAGCTGTGCATCACCGCTATGATCGGCAGAATGGCCCCTGTGGCCCATTTGGCACTCAACCAGTTCCATGTGAGGGACCGGATGACCCGGCAGCAGTTCTACTACCTTCACCTCATAGAGCCAGAACCACCCAGCAAGCAGAGCCTCCAGGGTCTGAGCTCACAAGtgCCGGATGCAAATGAACCCACGTCACCGCTGGAGTCTATTGTGCGCCAGGGGAAGCTGGACCTCATCATGCACCCCGTGGTCCTGAAGCTGATCACGGTCAAGTGGGATCTGTACGGCAGAACAGGAGCCTGGATACTCTTACTTCTCAACTTCCTCTTCATCCTTTCCTGGACGACGGTCGCCATCTCTATGTCCGTGGTCCGAGAAGAAGGGCGGCTCTACGACTTCcccagggactGGTGGCGTGTGTTGGTGGTGGTCTTGGCACTGGGGTTCACAGTGGTGGAGCTGTATCAGGAGGTGGCGGAGGTGTTGCGATCCCACAGGAAGCTGTGGGACTGGCAGAGGTGGTGTGAGCGCAGAATCAATGACGACCTGCACTGTGCACACCCCATGTGGCCCGAGgagaaacattttttaaaggaacaAATGAAATCAGTTTGGAATATGAAGCCATCCTACTTCCAAGATCTCTGGAATGTGTTTGATTGGTTGGTGTACACGCTACTGATGGCGGTGTTTGGGATCCACGTGGCGGACATCTTTGTCGTCGAAAGCACGCTTCGGGCGTACAGCCTTCGTCTCTTCGCTGTGACTGTGATCTTCCTCTGGCTGCGACTCATGAAGCACGTCAGAGCCTTTAGGGTAATGGGCCCCTTCATTGTAATGCTGGGGAAGATTGTGGGGGATGTTCTACGGTTCCTCTTCCTCTACATAGAGATCTTCATCCCTTATGCCTGTGCTTTTTGGATCATTTTCGGAGGCACTCCAGCGGTAGCCAGCATGCAGACCGTCCCCAAGCTGCTCTACAGCCTCTACCGCCTCACGCTGGTGGACGAGTACGAGTTTGACGCCATGGTGGCCGTGGACTCCATGATGGCCCACCTGCTCTGCGGGACCTTCCTGGCGCTGTCCGCCGTCCTCTGCGTCAACCTGATGATAGCCCTCCTGTCGGACACCTTTCAGAGGGTTTATGATAACGCCTTGGCAAACGCAGTGATGCAGCAGGCCTCCATAATCCTGCAGGTGGAGGAGTCGATGCCCCGCCTCCGCGGTTTCTGTGACAACCAGCACATCCACCGTAACTGTGCCCCCCTGGCGGAGTTCTATGACGAAGACATTGCCACCGACCCAGATCAGCACGCCGCGATGAGGAAGATCACTGTGCAGATAAAGGAGACCCTGGATGAGTTTCTTGAGATAAATAAGGAGGCGAGCCCCCTGGACACAGGCAAATCTGACGACAGGGACAGGGATGCAGGaggtgGAGGAATGTTGACTGTGGAACAGGGAGAATGTTTGAAGACTCTGCAGAAACTACAGCGGGACCAGAACCAGCAGAACCGAGAGCTCAGTGCACTGAGGATGGACATGAAGGAGCTGCAAATTCTGCTGCAGCGGCTGATCCTGTCTGGGCCAGGCTCACGTCAGTACCACCACCGCCATCAGCGTCACCAGTCTGGCTCAGAACCAGAGATAAGAGAGCCGGGCACAaggCAGGCAGCAACACTCAGCCAacagaggacagagaagaggggaTCTCAGCCTCATAGATCCCTGGGACCCCAGCAGGTGACGGATGCTCCTAGACTGGAGAGTGACACTTCAGCAAGCCTACAGACAGGGACAGCCCCAGAAGCAGGACCTGCTCAGCTTAAAAGTTTCCTCGCTCTCGCGGATGTCGGACGAACGGCTGATTTCCGCTTCCTGCGCCTCGTCCGCGAGAGTAAAGCGAAGATGGCGGCGGCCGAATCTGATCGCGAAGTACCGTCCGCTCTCTGTAGCGAATTCCTGGATTTCTCCGCCAAGGACACCGTTTTGAAATGGCTCCAAGTGACCGACCTCCCCAAGGAGGTGTACCAGCACCTGGCCCGCTACGTGCCCAAAATCTACTGCCTAGGTCCCAACCTGAACCCCCAGAGCGAGGACCTCCTggctcagctcctcctccaggccCCCCTCGAGTGGTACCTGTGCGGGGAGGACCCGTCCACTGGCCTGGCCAAGCTGGAGCAGAGCAACCAGCCCTCCCAGTTGTGCGGCCACGTCTTCAAAGTGGGAGAGCCCACCTACTCCTGCAGGGAATGCGCAGCGGATCCCACCTGTGTTCTCTGTATGCAGTGTTTCTTGGGAAGTGTACACAAAGAACACCGTTACAGGatgACGACCTCTGGGGGAGGTGGCTTCTGTGACTGTGGCGACACGGAGGCCTGGAAGAAGGGTCCTTACTGTCAGAAACACGAACCCAACATCAGCGACGCCTCGCAGGAGGACCCGCTGGCTCACCTGTCCGCCGACATGATCGCGCGGACGTACAACGTGTTCTCCATCGTGCTGAAGTACGCCGTCGACATGCTCACCTGGGAGAAGGAGGACGAGCTGCCGCCAGGCCTGGAGCCCCCCGTGAGTAAACACACCATGAACACGGAGCGAGGGGACACGTACTACTGCATGCTGTTCAACGACGAGGTGCACACCTACGAGCAGGTCATCTACACCCTGCAGAAAGCCGTCAACTGCACCCAGAAAGAGGCCGTCAGCTTCGCCACCACAGTGGACCGAGACGGTCGGAAGTCTGTGCGGTACGGGGACTTTCAGTTCTGCGAGCAAGCCAAGTCTGTCATTGTGAGGAACACCAGTCGGCAGTCCAAGCCTCTGCGTGTGCAGGTGATGCACTCCTCGGTGGTGGCGCACCAGTGCTTCGCGCTCAAGGCTCTTGCATGGCTGGGCCATGTCATCAACTACTCAGatGCGTTGCGGAGGATCCTCTGTCAGGTGGGCCTGCAGAATGGACCGGAAGGAGAGAACTCCTCGTTGGTGGACACCCTCATGCTCTGCGACTCCAAGATGTGGAAAGGTGCGCGGAACGTCTACCACCAGCTGTTCATGAGCAGCCTCCTCATGGACCTGAAGTACAAGAAGCTTTTCGCCATCCAGTTTGCCAAAAATTACCGGCGCCTCCAGACAGATTTTATGGAGGATGATCACGAGCGTGTAGTGTCAGtgacctctctgtctgtccagcTCTTCACCGTTCCCACCATGAATTATGAGCGCTTGCAGAGCGACTATGTGAAAGACGACCACGACAGGGAGTACTCCATCACGGACCTCTCCGTGCAAATGTTCACCGTGCCTTCCCTGGCTCGCATGCTGATCACAGAGGAGAATCTGATGACCACCATCATCCGCACCTTTGTGGACCACCTGCGGCACCGTGACCTGCAGGGCCGCTTCCAGTTTGAGCGCTACACCGCCCAGCAGGCCTTCAAGTTCCGCCGAGTCCAGAGCCTCATCGGGGACCAAAACAAGGACACTTGGCCAGTTAAACtaagttgtgtGTATGTTCTGATCAGTCGGCCGTCTGAGTGGACTGATAGTCTCAGGGAGAAGTTCCTGGAAGGgctggacaccttcctggagcTGCTGAAGTGCATGCAGGGTATGGACCCAGTGGTGCGCCAAGTGGGCCAGCACATCGAGATGGAGCCAGAGTGGGAGGCAGCCTTCACCCTGCAGATGAAGCTCACACACATCATCTCTATGATGCAGGAGTGGTGTGCAACAGATGAGAAGGTGCTGATCGAGGCGTACAGGAAGTGCCTGACCGCACTGACCCACTGCCACAGCGGCTTTACGGACGGAGAGCAGCCCATCACGCTGAGCATGTACGGCCACTCGGTGGACACCATCCGCTACTGCGTCTCGCAGGAGAAAGTCAGCATCCACCTGCCTGTGTCGCGCCTGCTTGCAGGTCTGCATGTTCTCCTCAGTAAGACCGAGGTTGCCTACCGATTCCCTGAACAGCTGCCCCTGAGTGAGCTGAGCCCCCCCATGTTGATAGAGCACCCCCTGCGCTGCCTGGTACTCTGTGCccaggtgcatgctgggatgtggAGGAGGAACGGCTTCTCGTTGGTCAATCAGATTTACTACTACCACAATGTGAAGTGCCGGGTGGAGATGTTCGATAAAGACCTCATCATGCTGCAGGCCGGCGCCTCCATGATGGACCCCAACCACTTCCTGATGATCGTCCTGAGCCGCTTCGAGCTCTACCACATCTTCAGCGCCGCCGACTGCAGGAAGAGATACAACCGAGAGAACGCCAACAAGGACGTGGTCCAGCAGAACAACACACTGATAGAGGAGATGCTGCACCTGGTCATGATGGTCGTAGGTGAGCGGTTTTCGCCAGGGATCGGCCAGGTACAGGCATCAGAGGAGATTAAGCGTGAGATTATTCACCAGCTGTGCATCAGGCCCATGGCTCACAGTGAGCTGGTCAAGGCGCTGCCTGAGAACGAGAACAAGGAGACGGGGATGGAGAGAGTGATCGACTCCGTCGCCTCCTTCAAGAAGCCCGGGGTGACGGGCAGAGGGCTGTACGAGCTGAGGCCGGAGTGCGCCCGACAGTTCAACCTCTACTTCTACCACTACTCCCGCGCTGACCAGTCCAAGGCAGAAGAGGCGCAGAGGAAGCTAAAGAGACAGAATGGAGAAGATTCAGCTCTGCCCCCACCAGTGCTGCCCCCATTCTGCCCGCTGTTTGCCAGCCTGGTGAACCTGCTGCAGTGTGACGTGCTGCTCGGCATGCTGGGAGCCGTGCTGCAGTGGGCTGTGGAGCCCAGCGGGGGGCACTGGTCTGAGTCCATGCTGCAGAGGGTGCTGCACCTGATAGGCATGGCCCTGCTGGAGGAACAGCAGCAGCTGGACAGCAGCAGTGAGGACAATGACGTCACCTTCAACTTCACCCTCAAGCTCTCCCGCCCAGGGGAAGCCCCCAGTAACACTCCCAGCATCCTCGCCCTCCTGGAGACCCTGCAGAACGCCCCCCACCTAGAGGTGCACAAAGACATGATCCGCTGGATCCTCAAGACGGTGGCCAGTATTAAGACGATGCGGGAGCGCACTGCCATTAGCCCGGTGACGGACAGCGGGGGACAGGGTCAGGAGGAGGTGCCCAGCTTGCTGTATCCGGCCGTGTCGCGCCGCTATCACATGCATACGCTGCGCGATAAGGACAAGGCGGAGCGCAAGCGCAAGGCGGAGATGGCGCGCCTGCGCAGGGAGAAGATCATGGCGCAGATGTCCGAGATGCAGCGGCACTTCATCAACGAGAACAAGGAGCTCTTCCAGCAgagcctggaggagctggaggcctctacctctacctcacTGGAGCACAGCCCCTCCTCCCCCGATCTCTGCGCTGTAGCCCCTGGGCCCGCGCAGCGCTGGCGCGTGAGCGCGTGA

Transcript

AAFF_T00141170

Protein

KAJ8418408.1

MVKSNQISPAGHENVAFEMTDGVATQSIRSMVSMTSVTSVMQAAAQWASYARGRWKRATSTRRSPTGKSTKIKYQGLAHDDDDIIDGPNKNWDLNKRLLDHFRVLDNNNQDTDEVDLQYLHGLICDGADVNSADKYGQTALHEISRAWNMDVMRFFLDRGADVQRADSYGVTPLHVAAALDYEEMIHFLLERKADVGAQTQKDLQTPLHFAAKNDAVGAIKVLLQFGADITARDYKRRTPLQLAANLDRSEAARTLMELMVKVVVDAGVQDSDGQLCITAMIGRMAPVAHLALNQFHVRDRMTRQQFYYLHLIEPEPPSKQSLQGLSSQVPDANEPTSPLESIVRQGKLDLIMHPVVLKLITVKWDLYGRTGAWILLLLNFLFILSWTTVAISMSVVREEGRLYDFPRDWWRVLVVVLALGFTVVELYQEVAEVLRSHRKLWDWQRWCERRINDDLHCAHPMWPEEKHFLKEQMKSVWNMKPSYFQDLWNVFDWLVYTLLMAVFGIHVADIFVVESTLRAYSLRLFAVTVIFLWLRLMKHVRAFRVMGPFIVMLGKIVGDVLRFLFLYIEIFIPYACAFWIIFGGTPAVASMQTVPKLLYSLYRLTLVDEYEFDAMVAVDSMMAHLLCGTFLALSAVLCVNLMIALLSDTFQRVYDNALANAVMQQASIILQVEESMPRLRGFCDNQHIHRNCAPLAEFYDEDIATDPDQHAAMRKITVQIKETLDEFLEINKEASPLDTGKSDDRDRDAGGGGMLTVEQGECLKTLQKLQRDQNQQNRELSALRMDMKELQILLQRLILSGPGSRQYHHRHQRHQSGSEPEIREPGTRQAATLSQQRTEKRGSQPHRSLGPQQVTDAPRLESDTSASLQTGTAPEAGPAQLKSFLALADVGRTADFRFLRLVRESKAKMAAAESDREVPSALCSEFLDFSAKDTVLKWLQVTDLPKEVYQHLARYVPKIYCLGPNLNPQSEDLLAQLLLQAPLEWYLCGEDPSTGLAKLEQSNQPSQLCGHVFKVGEPTYSCRECAADPTCVLCMQCFLGSVHKEHRYRMTTSGGGGFCDCGDTEAWKKGPYCQKHEPNISDASQEDPLAHLSADMIARTYNVFSIVLKYAVDMLTWEKEDELPPGLEPPVSKHTMNTERGDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAVSFATTVDRDGRKSVRYGDFQFCEQAKSVIVRNTSRQSKPLRVQVMHSSVVAHQCFALKALAWLGHVINYSDALRRILCQVGLQNGPEGENSSLVDTLMLCDSKMWKGARNVYHQLFMSSLLMDLKYKKLFAIQFAKNYRRLQTDFMEDDHERVVSVTSLSVQLFTVPTMNYERLQSDYVKDDHDREYSITDLSVQMFTVPSLARMLITEENLMTTIIRTFVDHLRHRDLQGRFQFERYTAQQAFKFRRVQSLIGDQNKDTWPVKLSCVYVLISRPSEWTDSLREKFLEGLDTFLELLKCMQGMDPVVRQVGQHIEMEPEWEAAFTLQMKLTHIISMMQEWCATDEKVLIEAYRKCLTALTHCHSGFTDGEQPITLSMYGHSVDTIRYCVSQEKVSIHLPVSRLLAGLHVLLSKTEVAYRFPEQLPLSELSPPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRVEMFDKDLIMLQAGASMMDPNHFLMIVLSRFELYHIFSAADCRKRYNRENANKDVVQQNNTLIEEMLHLVMMVVGERFSPGIGQVQASEEIKREIIHQLCIRPMAHSELVKALPENENKETGMERVIDSVASFKKPGVTGRGLYELRPECARQFNLYFYHYSRADQSKAEEAQRKLKRQNGEDSALPPPVLPPFCPLFASLVNLLQCDVLLGMLGAVLQWAVEPSGGHWSESMLQRVLHLIGMALLEEQQQLDSSSEDNDVTFNFTLKLSRPGEAPSNTPSILALLETLQNAPHLEVHKDMIRWILKTVASIKTMRERTAISPVTDSGGQGQEEVPSLLYPAVSRRYHMHTLRDKDKAERKRKAEMARLRREKIMAQMSEMQRHFINENKELFQQSLEELEASTSTSLEHSPSSPDLCAVAPGPAQRWRVSA

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|N-domain
Ubiquitin Family	E3\|E3 activity\|UBR-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF02207	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF02617	ClpS	ATP-dependent Clp protease adaptor protein ClpS	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR003126	Domain	Zinc finger, UBR-type	Interproscan
IPR003769	Domain	Adaptor protein ClpS, core	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR014719	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039164	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR042065	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan
IPR047508	Domain	E3 ubiquitin-protein ligase UBR2, UBR-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-