Gene detail

Detailed information of KAJ8413996.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8413996.1	HYALURONIC ACID-BINDING PROTEIN 4	AAFF_1.1_unplaced_14	5327334	5334322	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00065940

CATTCAAAACTCAACACTTGGTGAGGCGGCGTGATTTGAGCTTCCTTTAAGAGCTCGTGAATATTGAAATACATCGGGGGCGGGGGAGCTCCAGAGCCATATAAACTAAAACCGCTGCGCAGCCGCAGACAGGACCGACTTAAATACCCATGTAAACATTATCATACCCGGCAGGCTGTGTGCTCGCAAACGTTGGCTAATTTTGTGAATCATCCCATCTCAACACAGGCAAAATGTTTGTCTTGGCGCCGCTCGGCTCATAGAAAGTATAGTCACTACTACTTAAAACGTGGCCGAGGGGGTCTTGAATTTGCGACACACGGCTGTGCTGGCTGGTTATGAGGATTTGGCTGGCGACCACGGCTCAACCGCCATGCAGCAGGACAGCTTCGGTTGCGCCGTGATGAACCGCTTCGACCGGCTCCTGGACGACGAGGCAGACCCCTTTGACATCCTCCGTGAGGCCGAATTAGCGAAacagagaaagaagaagaaagacgCGCCCAAGAAGAGCAACGTGGGCAAACAGGGAAAGAAGGAGTCTCAGAAGGACCGGAAGGTCCAGAGTGTTGGCGATGCAGGTGTCGGTCTCATAAATGCTActgGGCGGAGGCTGCCGCCCTCCGACGGACGCGTGCAGAACGAGAACAGCGGCGTGGTGGAGCCCGAGAGACCGGGCAGGCGTGTGGTCTTCCGCGAATGCAGGCCGAACCAGATGGAGGCCCCTCGGCAATACCCAGTGGAGGCGTCACAGGGTCGGTGGGATAAGGGTGGTAGGGGGCGTGGCCGGGGCCGAGGAATGATGGAGGGTTACCCCAGGAATATGGGCAGCTGTGACCAGACGGCCAAGAAGGAATTTGACCATCGTGGCGGGAGTGACCAGTCTGACTGGGTGACCTGGACACCTGGCAGTGTATGTAGAGACGTCAAGGATGTGCCGGAAGCTGTGGAGACAGACGGGCAGACCCGGGCGACGGACGGAGGGGTGGCGGACGCAGAGGCGGTCCCAGAGGTCGCCGTGGAGATGTCTCTGGACGAGTGGAGGGCACTGCAGGAGCAGAGCCGACCGAAGAAGGAGCTGAAGCTCCGCAAGGCGGATGCCGGCGTGCCCTCCAAGGCCGTGGTCATCCACCAGTCCAAGCACCCTGAGGTCCAGGGGGATGGGCTAATCGATGAGGACGATGACGCCCACTTCTTCCGCAGACCCACCAACGACATCACGGCCAAGCTGGCCTTCAACTTCGGCAACCTGCCACGACCCGGccgggggggcaggggcggggcccGGGGGCGTGGTGGGAGAGGGCGTGGCATCCCCCCCAGCCAGCCCGAGAGACCGCCAGCACAGGCGGAAGTGGCTCTGGCCCCAAACCCGGATGATCCGGAGGACTTCCCTGCTCTGGCTTGAGGAGGCTGGTGACCTGTGGTTCGATGCTGAAGGCTGCTCTGTATCTTTTGTGTAGAGTCAAAAGCAGTTGCActcatgactttttttttttttttttttggttcaagGCCCCCCCAAAACAACGTAAAAACCATTTGGGGTGGTGAAATCTCTTTTGCTTTCTGAAAGGTTTTGAGTGAAAGCCATTTCACTGGAATGgggaaaatgtgaatatttatgtGGAAAAGATTAAATGCACTGTTGGCTGTTATGGCTTGTTCTTTTAATGTCTTCCTCCTGGCTGCCATGGTAACGGTTGCTAGGTCTGATACTTTGCTCATGGGAATGCTCATGCTCATGGTCATTGTTTTAATAGGTCGCCAACGTTACATGGTGCTGAGGCATCAGCTGAGTGAATTTCAGACTGAGTCAGCCTCAGTGTTTTGTATTCCGCATTTAACTCACCCCAATCGGTTTATATTAAGAAATTCTGGGGgctaggcctcccgcgtggtctagtggtttcaacgtctgacgctggccacggtgactggggttcgattccccgtcgcaccagagtctgctctggccgggagtgccacccgggcgacaattggctgtctgccccagggagggggagggaagctgacagtttgctgcacacaggagtggttctggggtgccggaattacagtcgacagcacgatgagtgctgtctcggaggaggcagtgcttcgccattgtcactgccggtcacagggctacggcagcgaactacgagggaggggattgaactaagaatagtgggagtaattggctaccaaattgggagaaaaactggataaaatccaaaaaattaatttaaagaaaTTCTGGGGGCCTTTGGTAGTGTAACGGTTCCGCCTTGGAATGCAAGTTGtttactgcagccgtggttcaaaacccgactgcaccagaccggccctggtcaggagcggcgattggctgcccaccccagggggagggtgaaccggcacgagctcaccgaggagcgtgAGGGCGTCTCTTgaacaggggtattcaaatccaggcctcaaggtctgcaggtatttgctccaaccacacactacaccctgATTTCACGAATTCgcttgcttcctggaccaaggagatatattattcgaaatcaggtggtgtagtgcgtgcttggagcaaatacctgcagacactgtggaccccaaggcctggatttgaataccccgcTCTAGAAAAGGTAGGCAGATCATCGTCGGCCTCGGGGAATttgcttgacccggaggacgagcggtgagtttgtgggggagggcgaatcgaaagaaagtggtgtaattggctaccaaattgattCTGAAATCCTGGAGAATTTGCTCCACATACAACGTACGGTATACCTGATACCTTCCACTGGGAGGGAAAGGACCATCAAGCTGCAGCGTGTGAAATAGTCCCTGCCTTGCATCGGGAAGAGCGCGTTTGAGCGGCAGTGTCCCTTGTGTAGATGCAGGACAGTGAATAAAGGCACAACTGCCAATTAAAGTGGGAGCTGGGATTTGAGTATAAAAAGTTTGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan
PF16174	IHABP4_N	Intracellular hyaluronan-binding protein 4 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006861	Domain	Hyaluronan/mRNA-binding protein	Interproscan
IPR032381	Domain	Intracellular hyaluronan-binding protein 4, N-terminal domain	Interproscan
IPR039764	Family	RNA binding protein HABP4/SERBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0033120	Biological Process	positive regulation of RNA splicing	Interproscan
GO:0045948	Biological Process	positive regulation of translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-