Gene detail

Detailed information of KAJ8408923.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8408923.1	PYRUVATE CARBOXYLASE	AAFF_1.1_unplaced_33	6550506	6642278	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00247410

Transcript

AAFF_T00247410

ATGAGGCGATGCTCGCACTCTTGCCTCTCGCTGAAACCGGGAGCTCCTCTGCCTGGGACAGAAGGGGCTGCTGATTGGAGACGGACGatgCTGCAGGTGGGCATGATGCGTCTGAGCCTGGGTGCGTTGGCGGTGAGGCGCGCTCACTGCCTGTCCCGTGCGGCTCATACCTCCACCCGGAAGGTGGAGTACAAGCCCATCAAGAAAGTTATGGTGGCcaacagagGTGAGATCGCTATCCGGGTGTTCCGGGCGTGCACAGAGCTGGGGATCCGCACCGTGGCTGTGTACTCAGAGCAAGACACGGGCCAGATGCACCGGCAGAAGGCCGACGAGGCCTACCTGATTGGGAAGGGCCTGCCACCTGTTGCTGCGTACCTGCACATACCTGACATCATCAAAGTGGCCAAGGAGAACGACGTGGACGCGATCCACCCCGGGTACGGCTTCCTGTCGGAGCGCTCGGACTTTGCGCAGGCCTGCATGGGGGACAAGGTGGAGGCGCGGGCCATTGCCATTAGAGCTgGTGTGCCCGTGGTTCCAGGTACAAACGCTCCGATAGCCTGTCTCTCTGAAGCGCAGGAGTTCTCTAAAACCTATGGGTTCCCCATCATCTTCAAGGCTGCGTACGGGGGGGGCGGCCGTGGCATGAGGGTGGTCCGAGAGTACGAGGAGCTAGAGGAGAATTACCAGCGGGCGTATTCCGAGGCCCTGGCTGCATTTGGGAACGGTTCTCTGTTTGTGGAGAAATTCATCGAGAAGCCCCGACACATCGAGGTGCAGATCTTGGGTGATAAGTACGGGAACGTGATTCACCTATACGAGCGGGACTGCTCCATCCAGCGGAGGCACCAGAAGGTGGTGGAGATCGCCCCCGCTGCCCATCTGGACCCCCACCTCCGAGACCGACTGACCGCCGACTCCGTCAAACTGGCCCGACAGGTGGGCTATGAGAACGCGGGCACAGTGGAGAAGGTGGGCAGGGCCTTATTGATCTGGAGATCAGGGTGGTGGCTTTCTGCCTTCAGGCAGTGCAGAGACTACTTCATCACCAGGATTTTGATGTTTGCTGGAGGGAAACGGCCCATAATCTTTTATCGtgtGGATCTTGTTCACGCCCAGCTGCACGTGTGTGAGGGGCGGAGTCTGACGGAGCTGGGTTTGAGGCAGGATAAGATCCGCATTAACGGCTGTGCCATCCAGTGCCGCGTCACTACAGAGGACCCGTCCCGTGGCTTCCAGCCCGACACCGGCCGCCTGGAGGTTTTCCGCAGTGGTGAGGGCATGGGGATCCGGCTGGACAGCGCGTCGGCCTTCCAAGGCGCAATCATCTCTCCGCACTACGACTCGCTGCTGGTCAAAGTCATCGCCTCTGGCAAGGACCTGCCCACTGCCGCTGCCAAGATGAGCCGCGCCCTCGCCGAGTTCCGTGTGCGCGGTGTAAAGactAATATCCCCTTCCTGCAGAATGTGTTGAGTAATGACCAGTTTCTCTATGGGACGGTTGACACCCAGTTCATCGATGAGAACCAGGACCTCTTCAACCTCAAACCTGTCCAGAACCGAGCCCAGAAGCTGCTGCACTATCtaggacatGTGATGGTAAATGGCCCCACCACTCCCATCCCAGTGAAAGCCAAACCCTCCTCCATCGATCCTGTCATCCCTCCTGTACCTCTGGGTGATCCTCCGATCGGTTTCGGGGCGTGCCTCCTGCTGATGGACACCACGTTCCGGGACGCGCACCAGTCCCTGCTGGCCACCCGCGTGCGCACCCATGACCTCAAAAACATCGCCCCCTACGTTGCCCACAACTTCAGCAACCTGTTCAGTGTGGAGAATTGGGGCGgcgctACATTTGATGTGGCGATgcgcttcctgtgtgagtgccCGTGGCGGCGGCTGCAGGAGTTGAGGGCGCTGCTGCCCAATGTGCCGTTCCAGATGCTGCTGCGTGGAGCGAACGCCGTGGGCTACACCAACTACCCAGACAATGCGGTCTTCAAGTTCTGTGAGGTGGCTCAGGAGAATGGGATGGATATCTTCCGGGTTTTTGATTCGCTGAATTATTTACCCAACATGATCCTGGGCATGGAGGCCGCGGGCGCGGCAGGGGGCGTGGTGGAGGCCGCTATCTCGTACACGGGCGACGTGTCGGACCCCATGCGGCAGAAATACTCGCTGCAGTACTACCTCGACCTCGCCAACGAGCTGGTGAAAGCTGGGACACACATCCTGGCCATTAAGGACATGGCGGGGCTGCTGAAGCCCGAGGCAAGCCGGCTGCTGATTGGTGCTCTGCGGGACCGCTTCCCTGACATGCCGATCCACGTGCACACGCACGACACGGCCGGAGCGGGCGTGGCTGCCATGCTGGCGTGCGCCGAGGCGGGGGCCGACATCGTGGACGTGGCGGTGGACTCCATGGCGGGAATGACGTCCCAGCCCAGCATGGGGGCCATCGTAGCCTGCACCAAGGGCACCAAACTCAACACAGGTATCTCCCTGGAACAGGTGTTTGACTACAGTGAGTACTGGGAGGTGACCCGCGGCCTCTACGCTCCCTTCGACTGCACCGCCACCATGAAGTCGGGCAACGCAGACGTGTACCAGAACGAGATCCCCGGAGGCCAGTACACCAACCTGCACTTCCAGGCCCACAGCATGGGGCTCGGCCACAAGTTTAAGGAGGTGAAGAAGGCCTACACAGAGGCCAACAAGCTGCTGGGAGACTTGATCAAGGTGACCCCTTCCTCTAAGATTGTGGGCGACTTGGCACAGTTCATGGTGCAGAACTCGTTGACCCGGGCGGAGTGGAGTTCCTGCAAGGCCACATCGGCATCCCTCATGGCGGCTTCCCCCGAGCCCTTCAGGTCAAAGGTGCTGAAGTCCCTCCCCAGAGTGGAGGGGCGCCCCGgagcctccctgccccccatggACTTCAAGGCCCTGGAGAAGCAGCTGAGGGAGACGCACGGTGATGACATCACTCCCGAGGACGTCATCTCGGCGGCCATGTACCCCAAGGTGTTCCAGGAGTTTAAGGAGTTTGGCACCACGTTCGGCCCGGTGGACTGCCTGAACACACGGCTGTTCCTGGACGGGCCCAAGATCGCCGAGGAGTTTGAGGTGGAGTTGGAGCGAGGGAAGATTCTGCACATCAAAGCTCTAGCTCTAGGGGACCTGAACAAGGCGGGTCAGAGGGAGGTGTTCTTTGAGCTCAATGGACAGCTGAGATCCGTGCTGGTCAAAGACACTGTGGCCATGAaggagaTGCACTTCCACCCCAAGGCGCTGAAGGATGTGCGGGGGCAGGTGGGGGCGCCGATGCCTGGCAAGGTGGTGGAAGTTCGGGTGAAGGAGGGGCAGCAGGTGGAGAAAGGGCAGCCCCTTTGCGTGCTCAGCGCCATGAAGATGGAGACCGTGGTGAACTCCCCGCTTTCAGGCACCATCAGCAAGATCTATGTCACCACCGACGCCAGCCTGGAGGGAGACGACCTCATCCTGGAGATCACAGAGTAGGGCGGGGCCTCGCGTGGGTCACCACACCCTTCTCAAAGAGGTGTGTCTTACTCTTAAGAGAagaagggagaggaagagatggagaggttTATCTTTCAGATTAAtgacttttttaaacttttttgttgATTAATTAGCAAACGAGAGTATAATTAGTGGGGCTAACAGGGATGAGCGCAGGGAGTGTCTTTTCTAACCGCTGACGTTGCAGTAGTATCCCTCTCGATGGCCTAGATTCTTGTGTGTGTCCATTTGGGCTTTGTTGGGGGGGATAAAGGCGGTGTCGTGTGGTTGCGGTGGGCGTCTGGGCAGATTTTGGTCTTTGTTCCATTTCTTGTTGTTACTGACGTGTTCGGGGTTGTGAACGCAAACTGTGTGCTTTGAGGGGGAAAATTAGGGTTTCGTGGAACTTTTGCACTTATGTGTTTCGATGTCGCCCACTGcttattaacaacaacaaaaaagaataatactaataacaatCAAATGTAAGTGTCACTTTACTGGAGTAGAAAATTGTTCATATCTAATGTCACCTTGCACCTGACATCAGAGCGGAAAGACGAGTTTTCGTGTATTCGTCATGCCATTGTTTAAAGATGGATAAAGCAATAAAATAGAGTAGAGTTGTATTGATAGGTATTTTTACTGTTTCTGTCTAATGTACTCTGTTTGATCACACATTATGCCATTAAATGCTGGGATATGTTACCGTGGGAACATTGTGAATGCATTGTATATCAGATCTGTGACAAACCGAAAGGATTAGCACAATCAATATCCCTCTTCTCTCCATCTTTCATTGTCTGCTCCCTCATCCCCCTgtcgtcatcctcctcctcctcctcctcctccctccatcctcattattacacacacacacacacacacacacacacacacacacacacacacacacgtacgtatgcacacatgcgcacacatgtacacgcgTGCCCATGTGTACGTATACACACAGATGCAGGCAcctatgcatgcatacacacacacacacgcgcacatatacatgcatacatacacacgcgtacacacatgcacccacacactttACAAAAGGCGCAGTAGAGGGACTTCCTCCTGTATTCCCATCTCGTGGCTTCATTGCCTCAGgcgcttttttcttttttgtgaattgaggtggggttttttttaccaGTTTCCTGTCTTTTTAACTTACAAATAgtaaatgtgaacattttgcATGAAGCACTTGGTTTTGTTTCCACTTTACATGAATTGGACTCAGTGCCTGTGGATTTTCACTGCAGCCCACATTCCAGCTGCTGTGCCCTGATAAacagtgtgagcgtgtgagcgcGCACGACCGCTGTGCCCTAAGAGGCATGTTATAACAAAGACACGCGAAGTGCGCGTTTGATGTGTGTCGTTACGCGTTCTTACACGAGTCACTGAAATACGGGGTCAGGTTTCGCTTGCTTAGCAGCTGTGTAGTCTTGGTGCTCTGCGTAACCATAGCAATGGAGCGAAGGCCACATTCTGTAAAAGGTccatgctgtttttgtttgtttgtttgctttaaaGAGGACAGCTTTGAGAGATCTCTGTGTGAAACTCTGTATCTAGGGTAAGGTTTGAGGCACAGGAAATTGACTGCCAGATCGTGGTTGTTGTAAATGTTCATATTTAGACCGTGTAGAATATTCATGCTgtagatttatattttttactgaaaatgcTCTCCATGTTTTCCTGGGGCTCCATGGGTCTGTACAGTCGTCACATTGAGCTTAATCGTCCGTATGCATTCACAAACTGGAAGGGAACAGGACTGGTGTTTAGATGTGTGATAGAGCTCAACATTAATGCTCCATTTCTAGTGGGGTGGTGGGGCGCAGAGAGGATATAGAGTGGATTCTCTCGACCATTGTGGATCAAAATCAAGGCATTTGGGTTTCCTTGCAGAATTGGAGGGGGATGAGGAATAGCAGGGTAAATATGTCTGTtgtgatgtgttttgtaatgtgtttgaATTGATGGGACACAAAGACCAAACCTAACACGCACATCTCAGTGGTGCTGTgatgaaaatatacatatttgggACCATGTCACATGGGACTGTATCAAACCAATTAAGGAACGACAACATCTCTGTGATCTTGCCTTTACGTTGCAGCTTTTCTCTGAAATTTCACGTCTTTACTCCTTTTGTTAATAATAGATCATGCAAATAGTCTACTGTATCACCAATCAATCATCTATTCTGtcggtatgcaaaaaaaaaaaaaaaagaattattgaaaaataaaatgataaatgaaag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00289	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF00364	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF00682	HMGL-like	HMGL-like	Domain	Interproscan
PF02436	PYC_OADA	Conserved carboxylase domain	Domain	Interproscan
PF02785	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000089	Domain	Biotin/lipoyl attachment	Interproscan
IPR000891	Domain	Pyruvate carboxyltransferase	Interproscan
IPR001882	Binding_site	Biotin-binding site	Interproscan
IPR003379	Domain	Carboxylase, conserved domain	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005481	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR005482	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR005930	Family	Pyruvate carboxylase	Interproscan
IPR011053	Homologous_superfamily	Single hybrid motif	Interproscan
IPR011054	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR011764	Domain	Biotin carboxylation domain	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43778	PYRUVATE CARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004736	Molecular Function	pyruvate carboxylase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006090	Biological Process	pyruvate metabolic process	Interproscan
GO:0006094	Biological Process	gluconeogenesis	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-