Gene detail

Detailed information of KAJ8408910.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8408910.1	RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1	AAFF_1.1_unplaced_33	6270596	6284400	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00247280

CAATAATCTAATATTATCCTCTCGGGTAGTTTAACTGtagtacccacaatgcaccactaGTTGCTTGCCCCCGATCACTTCACTTCTCTTTCCGGTTAATTGTGTCTCTTTTCCTGTGCCTGGATATGCGAAGAACTAGGCAAGCGAGGCCTCCTATCTAAATCCGACTCCATCATCCCCGAAAGGCACGGTTTACTTTCGGCAAAATGACCGAACAAATGACAGTGAGGGGGACCCTGAAGGGCCATAACGGTTGGGTCACCCAGATCGCCACAACTCCGCAGTTTCCCGATATGATCCTGTCTGCTTCCAGAGATAAGTCCATAATCATGTGGAAGCTGACACGCGATGAGACCAACTACGGCATTCCCCAGCGGTCGCTGACTGGGCACTCACACTTTGTGAGCGATGTGGTCATCTCCTCCGATGGGCAGTTTGCCTTGTCTGGGTCCTGGGACGGGACCCTGCGTCTGTGGGACTTGACCACGGGCACCACAACCCGCCAATTTGTTGGTCACACCAAGGACGTCCTCAGTGTTGCCTTCTCCGCCGATAACCGGCAGATTGTGTCCGGCTCCCGGGACAAGACCATCAAGCTGTGGAACACCCTGGGGGTCTGCAAGTATACCATCCAGGACGAGAGCCACACTGAGTGGGCGTCTTGTGTGCGCTTCTCCCCAAACAGCAGCAATCCCATCATCGTGTCCTGTGGCTGGGACAAGATGGTCAAGGTGTGGAACCTGGCCAACTGCAAGCTGAAGACCAACCACATCGGCCACACGGGATACCTGAACACCGTCACTGTCTCTCCAGATGGCTCGCTGTGCGCTTCTGGTGGCAAGGACGGGCAGGCCATGCTGTGGGACCTGAACGAGGGAAAGCACCTGTACACCCTGGATGGAGGCGACCCCATCAGCGCCCTCTGCTTCAGCCCCAACCGTTATTGGCTGTGCGCTGCCACCGGCCCCAGCATCAAGATCTGGGACCTAGAGGGCAAGATCATTGTGGATGAGCTGAGACAGGAAGTGATCAGCACGAACAGCAAAGCAGAGCCGCCCCAGTGCACCTCCCTCGCCTGGTCTGCTGATGGACAGACGCTGTTTGCTGGCTACACCGACAACCTGATCAGAGTTTGGCAGGTTACAATTGGCACCAGATAGAAAACCTCCCCAACTACATCAAGAGAACTGCTATGAACTGTTGAACAAaaccttaaataaaaaaagggaaaaagaaatCCATTGTTCTGGTTTGTATTCTCCCAGTGCAAGGCCATCTGTCCTtaccttgtttttgtttgttggtaTGAGCTGCAGATCTGGTACCACAGTGGATCACTCGGGATTCCTGAACTGAAAATCTTCCCAGTTTTCTCAGTCTTGTTTTGAAAAGGGgagaattaatacattttattttcctgaagTTGCATGATGAGTTCCAGTTGTCTCATTTGTGTTGTTATTCATCTTACAATATTTAACCTGTAAGTGATATTGTGTGTAGGCATGTTCCAGTGGCAGGGTGTATAGTTACAGGAAAAACAGGATTGTTTTTTGATGCCCTGTGTTGTGTCTCTGACACTCAGACTATTTTTGCTCATAGTTTTCATTGGAGATTCGCCATAGGTGGGTTTAGATTGACTGCACCTGATCTAGTCtagataaatgttttatattgttgCAGAATATAGTAAATGGCTAGGTCAAGCCATAGGCATGCATTTGAACACCACCTCCCCCTCATACACATTCCCATGTACAGTACTTTACAGTGtagcaaatgtatttaatataatgtTTAATACTGAACCTGGGGTCCCTGGTTGGCTGaaccggtaaaagcacttgaCAGTAAAGGCTCAACAAAGTGGTCTTAATGGTGGCGGTTTCATCAAGTGGTTTAGAGTATTATTTTAACTTGGCATACCCCTTAAATGGGTATGATGATAAATTGTGTGTTCATTCTGATGTATGTAGTTGGTATAGTATTCCCATACATCATGGTATTGATCTGTGCTGTGGTGCTATCTTGACCTCCCATCTCTTGCTACACACAGCAATACTGTCACTTCTGACCTGTGTATTCTGTGATCAGTACAACACTGCACTTCCATGAGAGGGTTTCCCTACTATGGAGAAATGCACTAAAGCTTAGTGTCTATATTACAGTTCTTGAAAGTGCAGTGAGTGAAACTGACCTATTTTGCATCTTATCCTAGGGCTCTGCTTTTTTGCAGTGGTTCTGCAGGCAACGCTTAACATCTTATGCTGAACAGACAggcttttttctgtttgttgaaTACCAGTCTGTAGGTACACTGGAACTCTGTTGTATGAAGATGCTTACAGGTGCCAAAGTTTTGAGACCCCTTTAGCTATGCACTGCAAAAAAGGTGACAGCTTTGTGGCCTTGTCTTGTTTTGGCCTCAAGGACTGCAGACTGTTTTGTCTATCCATAATAAATGATCCCATTGAACAAGTAGAGGGAGCAGCATAGTGGCAGCCTGAGGATTGAGCTGGCCAAAGAACTAGGGAGGCTTCCTGCTCATGGAGtctcattttttccccagtatGATTGTGTTGTAGAATTTGCCCCTTTTAGCTTCCATCATATACATATCTACATTTAAGTTAGGCCTTACCCCTTTTCCAGTCATGATACTTCGAGGGGTAACAGGGTGGGTTGTAATATCTGGCACATTACAATGTTGAATGGAATTGAATTGGCTATTGGCCATCACTTTTTGCTAGTGTGACCAAACACTGAACAGCAATTCATGAAGATTTCCAGACTGCTTGATCTCTGCTTACAACTTGTAAAGCATTGGCAAGTGTATTCATCGCTGCTCAGGGATCAGACACAAACCCAGGGGTAGGCACCCTGGATCCTGGAGTGCTagggatgttttttttctctccatctgaaCCCCTAACATAATTGGATTAATTACTCAAATAAATACTTTCAAATCTAAGAGTAGGCCAAAGTGCAACCTACCAGTTTGTGGAAAAACTACGACTACCACCtctaatataaaatatgtttgggATTGCATGTAACTAATCTGaatttaataaaacatattgTGGATATGATTGTGTTTGAATTATGCAGACTAGTCGGCAGTTGgcgtgaaaatgtattttcacacttctgtaggacatatgcccatcctggagcaaagaaacatGTTGAAATGAGTAGGTGGATCTTTTTCAACCACACAAACGTAtataaacaattgaaagcaaagggaaatgtttttttgacagcctaaaggcaaaagaaaaatgttattgattggatgccttgattttttaaattcagttggatcacaatattttatattttggtgttgaatgtaATCATTGTCAGAAAATGTGTTTCCTCTCTCATGACTTGTCATAGAGGTGTAAAACTTGTCCATAAAAGGAAACACTCCTCTGCCTCAACAGAATTGTTTACAACtgataaatattgatttgcCATTCGTGTCATTCGGGCTTATTTCAGGACTTCCATAATTCAAGAACAGACATCTCACAACTCCCGCTAGTCTTTGTGTGACATAGGTATTCTATCAGCTCTGATTTACAGTCATCATCAAAGCTGGGAATCGATTATAAGGGAAAGGTCTACATGCTCAGGATGTTCACTTATTGCGGGTCGAAAAGCTGCATGGCCTTTTTAATTTATGAGCTGGTTGAACAAAtcttggtttctgttttaaCTGTTTGGGGTTAAAGTGTGCATTGAGTTTGATGGCAACTTGACAAAAtagttgtttgtgtgtttgtttattgatcCATTTTTGGTGTGCACCTGCTGTGCCAATGTTTGTTATTCATTGACCAGATTCTCAGTTTTATTATAAGTTTGGTGAATTCTGTTTTTTCGACTCAAACCATTTAATCAGGTCATTCAGATTTTGCTGTGTTTATAAATAAGAGACAGCTGTTCCTTCAAACCTTTTCAGTCCCTCAGCAATGCTATCATTTCTGTCAGCGCAGTTATTAGGTGAGGTGTCTAACTCATCTTTTACAAAGCTGCTGTAAAAGTCAATGTAAAAGCATAGTAGGCCATGGATGCATACCAAGTACCCCAACGCTTCTTACGTGGCTCAGGTGGCAGTTTTATTGCTGTCTGGGTAATTGCGTGTTTAAGATGTTCCAAATAACGGTGTTTCCTACTCTGACCATGTTTGAATACCTTCTTCATTGTTGCAACAAGTTTGTCAATCTTTCAGAAATTGTCTGCCCATATATTGCAAGCAAGTGCTAATATATGAGCATTGCCTGTCAAATTAACAGAATTTGGAAATAAGCCTTGCAGAATGTCATTGTATGCCTTAACCATGTAGCTTGCGTTATCCTATACAAAGCCTGTGGTGACATTTAAATCCACTTTGTATGCATTTAAACTGTTAACAACGGCCTCTGCCTCTGTGGAGTGATTGACATATTGTATACAGTATCTGCCAGTAGGCCTACCACTCTCAAATAATCTGTTTCTCCttgtaaaacatacaaaatgtagATCATAATGGTCTTTCGTCTGTAACAACAGATATGCTGTTGGATTTTTTAGCCCATCTggttaaaacatttgaaaaacatatattttatttcgcttttgTCTATTTTTGCGATGCGCTGTAAATATTCCCTTCTCAAACCACCAGCAGTTGGATTGCCCCACCATTCACGTCATGCTTATTTAAAAAGGCGCATATTTTGGGGTTGTCAATTTTCTCAAGGGGAATATTTACGCTGACAAAGTCTTCTGTTACATCGTAAATTATGTTATGCCTCCTCTCCATactgtcatttctttttttgacaGCGGATGTCCCCTCACCCCTGTCAGATTTGATCTTTCGTttttcaa

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045223	Family	Small ribosomal subunit protein RACK1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19868	RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001934	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0005080	Molecular Function	protein kinase C binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045182	Molecular Function	translation regulator activity	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-