Gene detail

Detailed information of KAJ8408855.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8408855.1	UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1	AAFF_1.1_unplaced_33	4276509	4287212	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00246730

CTATAACCAATGAGTTTTAACTCCTTGCTATAGTCGACCTACCAgctacgtctctctctctctttctttctgtcgcctCCTGGTGTAAAGTGACGGTACTCTCAACAGGAAGTTGAAGTCTGTAAGGCCGATTGGAAACAAACCGGGGCATCTCTGGGATACAGGAAGAAACTGCTGACTAATCAACGTCGAATGAAATTAAATTGAATGATTCGCAGCAGTATGTCCGTGTCGGTGATAATAAAGTGGGGTGGACAGGAGTACACCATCCGTACGTTGTCTGAAGAGGACACCGTGTTGGATCTCAAGCAATCCATCAAGTCTCTGACAGGCGTTCTCCCAGAACGACAGAAACTCCTGGGCTTGAAAGTGAAAGGTAAACCAGCAGATGATGACATCAAGCTGGGCACCTTGAAGCTGAAGCCAAACACCAAGATTATGATGATGGGAAGCAGGGAAGAAAGTCTGGAAGATGTTTTGGCCCCTCCCCCTGaaaatgatgatgtcatcaatgaTTTCGACATTGAAGAAGAGGTTATAGAGGTAGAGAACAGgGAGGAGAATTTGGCAAAGATTGCCAGACGTGTGAAGGATTACAAAGTGGAAGAATTAAACACCCCCAGGGAAGGGAAGAGACTTCTGGTGTTGGATGTGGACTACACATTGTTTGaCCATAAGTCGTGTGCCGAGACAGGACAGGAGCTAATGAGGCCTTTTCTGCATGAGTTCCTCACAACTGCATACGAGGACTATGACATCGTCATCTGGTCTGCTACTAGCATGAAGTGGATTGATGCTAAAATGAAGGAGCTGGGAGTCACCGACAACCCCAACTACAAGATCACCTTCATGCTGGACAGTGCAGCCATGATCACCGTGCACACCCCAAagaggggggtggtggagGTGAAGCCACTGGGAGTGATATGGGGCAAGTATGGTGAGTTCTACAACAAGAAGAACACCATCATGTTCGACGACATCGGCAGAAACTTCCTCATGAATCCCCAGAATGGGCTGAAGATCCGCCCCTTCATGAAAGCGCACTTAAATCGCGAGAAGGATAAGGAGCTCTTCAAACTCTCTCAGTACTTGAAGGAGATCGCTAAACTGGAAGACTTTTCTGGTCTCAACCACAAACATTGGGAAAGGTACCTGTCCAAGAAGCAGAGCCAGTAGGGCACCCCCCAActgggcgtgcgtgcgtgtgcgtgtggttCCTCCTCCATCAAGCAGTAGTGCTGGACACTCGAGCCGACGCCAGACTCCCCCACGGCTGGCTGACCcccagtccccccccccaccccaccgtctaggatttcctttcattttatgtatttttttcttcttgtcacCAAGGTGTAAACTCTCTTTCTGCCTCCGACTCAagcatgcgcgcgcacacaatACTCGTAGCACGTCCATCGATTGGCACACGGGTTCCAGCTGCTAAGATTTGGCCTTTTGGTCCCAGTCAACCCCTCCCCACTCATTGTTCATTCGGAAGGACCCCTGTCATGCTCCTttgtctttttctcccctcttctTTTCTTACCAAGTAGAGCCTGTGGAGCTATCTCGTCTCCACACAGGAACTAAACTGTGAGCTTGGCGCACTAGTTGGCTCtaaattgcttttttaaaattcctGTAATGCTGATTGAATGACCATGGTTTTCAAAGGGGTGGTTGGAGCACCCATGTGCCACTTTGGTCAACAGGAGGGGGTTCATAGAGACCCTTTCTCGGAGTTCGGAGAGATGTGCCAGCCAAtgatatttatgtgtgtgaacCTTAAACCAAATACCTTGGTCACATTTTACACAAAGTAGACACATTTCCGAGTCATTGTGAAGCCTGTGTAAAGCCTTTGTTGCCAGTCCATAACGTCCCTGTCGTTCATCCATAAGCACGTGTGCTGGACTTCAGAgggttgacactgtcaagcgatGACATGTGCTGCGTCACATTTAAGGATCAAATTTTAAGTAATGAATGTTAACATTGTCCTTCATAAAGCCTTGCGTTATACCTGATGACTTATTCCTGAAGGTGCTAGGTTGTATTGGCCAAGGCCTCACGCATGCTTGACGAAGGCTTTAGGAACTTATGCTTTGAATAAATTGTGACCAATACCTTTTGCAGGTGCTTGTATTTGTCTTTTtgcttttctctccccccccccctttttagctCTGAGATTGTGTTAGCTAAGTGTTCCTAAGTTATTTCCCAGAGATATCGGTCAGAAAAGGGCCCGATGGTAGTGTTTAGTTCTTTTTCAAATGTGTCTCTGGAAGATGGTAGAGAGGTTTCCTACCATTGGCTGAAGCTGTTTAAGGTTGTTCTtgacagtatttttattttgtggagCGGTGTCTTTGTAAGACAAACTATCTAATTGGTTTGTAAAGTCATGTGTGCGTTTTGGGAGGAAAGCAGAATTTGTGTTGCTTTGTGCAAACTGACATTGTGAAACATTTGGcaataaatgtgtcatttttttttatttaaaatttttttaatgtttttttttttttttttttttttttacactagaTGTGTTCTTTtaaggagaggggggaagaaagagcagggcatgtttgattttgttttagttttttctcccaatgatATGCAATTTCTCAAAGATCACGAGAATTGTGGGTAAGGTTCTCAGGAACGCTCATGGGATGGCTCACTGTGGGCTAAAGCCAGCTAAAAGATATTCCCCTTTTGAGTTTTAgtgttaaaacattaaaaaggtaCAAAACTACAGCCATGTTTGAAAAACAACCATTGGCTCTCAATTTTCCCTGACTCAGGAGAGGATATAATGGTAATGGCACAGACTGCCCAAAATTCGATATGCTTGTTGAGCACAGTTCTGTTTACGTGCTATGTGTGGCTGTGCGTCTGACAGTAGTTGCCTGGGAGCCCAGCACCCTTGCTGATTGGATGGTTTACGAGACGGGTGGTTGGATGATTTTACGCAATTTGTCACAGGCTCACAATGGCACATCAAAGGAGTGCTACATTTAAGTCAGCACCTTTTAGGTACTAGCAATTTCCTATAACTGCAAACTCCCTTTTAATGCGTAGTATGCAGTTGGTCCCATACTCCGGTTAAGTGCATAACCTCACATCGGTCCAGATTGATTGAAATTAGCGAGCGGTCCTAGAACAGAAAATGTATAAGGAAAATGCACACTGAAGTAAGGAGAAAATAGTCTGCTTAAGTTGTTTTAAGACATACAATCAGTGTTTCTGGTTGTTCCTTCAGTGTGGTAATACCCGGTTCACTGAAAcaagcaagcaaacaaaaaaatgtacatattctGCACttactttgtgtttattgttacCTAACACGTTTCATCTGAACCTGTGGCAGCTGCCCTCGTTCACGGAGAGCTACAGCGACGTACAGAGCAaacttgtgtaaatgtgtaaatgtcagAGCCTTTGTGCTTGTTGGAGGGCTCAGTCAGACAAAGCTGTGGCTCCAGGCAAACACGTGCGCCTTCCAGACCACCTGTTCCGAAGCACTTCTGTAAGATTGCACTTCTGCTACTTTTGTCATGTCAGATCTGTATTTCTTAATGACAGACTTTTTCAGCTCGACATGTTCTAAAGCGACTACCAAAGTTTGCCACATACTGACATGATGTAACAATGTGCTATCCCAGGCCACCCGGAGCTCCCTGTCCTGTGCCCATTCTGAAACATCCTCTGCCCCTTACACCAGTCCATACAGATATGAACACATGTACATATGCTCCCCATTGGGGCATATTCTgactgtaaataaaaaatatcaatcTTTTTA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF03031	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR004274	Domain	FCP1 homology domain	Interproscan
IPR011943	Domain	HAD-superfamily hydrolase, subfamily IIID	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR051658	Family	Ubiquitin-like domain-containing CTD phosphatase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48405	UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-