Gene detail

Detailed information of KAJ8408845.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8408845.1	FARNESYLCYSTEINE LYASE	AAFF_1.1_unplaced_33	3843013	3855659	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00246630

GTCAGCACTGTTTTGCAAGTTTCAACCAACCACCTGACCATGATCTGGTCTGACCACAACTGCAGGTCTGAAAGAAaatgcaaaaactgaaaatcttCAAGGACAGATATTCACCGAAAAGTTTTTCGCTCGTTGACAGTGGCTAACATAACATTACCTCAAAATACCGACCCACTGTAAAATTATTGAGTAACGCATCTTTTAAAACTCCACCATCTTGGTCTCTGATGTCACACAATAGCCCTCCGGAACGggatcttttctttttaatttaattggtgCAAAGAGATGTCTGATGGATCACGCGGTTCCGTTGCCGGATAATAATCCAAAAGATAGTCTGCATTTGCTCATGTTTTGATAGTCATCCATTCATCATGCCCCGATATCTGCCTTTGCGATGTATTCTGACATTGGTGTCTTCACTGTCTGTGCTTGGAGACGCCGATTCTGCACAAGACGGGGCTCCCCCTTCTAAAATAGCCATCATAGGAGCAGGAATCGGCGGAACTGCGACAGCACATTTTCTACGCCAGCACTTTGGATCAGAGGTGCGCATCGATGTGTTCGAGAAGGGTACCGTCGGGGGGCGGCTGGCAACTGTCACAGTCAACCACCAGGAATACGAGTCTGGAGGCTCCATCATCCACTCTCTCAACCTGCACATGCAAGACTTTGTGAAGCAGCTGGGCCTGAAGCACCGGAGGAGTGTGGCGGGGAAGACGGCCGTGTTTAATGGAGAGGAgttcatcctggaggagaccgaCTGGTACCTTCTGGACCTCTTCCGTCTGTGGTGGCGCTACGGCATCAGCTTCATCCGCCTGCAGATGTGGGTCGAAGAGATCATGGAGAAGTTCATGAGGATTTATAAGTACCAGGCCCATGGCTATGCCTTCAGCTCGGTGGAGGAGCTGCTGAACTCCCTGGGGGGCTCTGGGTTTCTGAACATGACCCGACGCTCCCTATCTGAGTCGCTGCTGGAGCTGGGTGTGTCCCAGCGTTTCATCGACGAGGTCATTGCCCCCATCATGAGGGTCAACTACGGGCAAAACATCAGTATTCCTGCCTTCGTAGGTGCAGTGTCGCTGGCAGGTGCACAAGCCAACCTGTGGGCAGTGGAAGGAGGGAACAAGCTGGTGTGCCTTGGTCTGCTGAAACTAGCCAAGGCCACCCTGATCCAGGCACAAGTCACCACCATATCCCGCCAAACCACAGGAGAATCCACCCAGTATCAGCTCAACTATGAAGGTGAAACTGAAGAGGAATCAGAGCTCTACGACATTGTGGTGGTGGCCACGCCCTTGCAGGACAGAGTGGGAGCAGGTATTTCTTTCCAGGGCTTTGAGCCCGAGCTGCCCGACATTGCGGGCTCCTACCACCACACGGTGGCATCCATTGTCCATGGCTACCTCAACTGCTCCTACTTTGGCTTCCCAGACCCTAAGCTCTTCCCCTTCGCCAGCGTGTTGACGACGGACAACCCAGGCCTGTTCTTCAACAGCGTAGCCTGTGTCTGCCCCGTCAACATCAGCACCAACTTCCGCCGCAAACAGGCCCAGGAGGCCAGCGTCTACAAGGTGttctcccagcagcccctgggcAAGCCCGAGCTGAAGACAATATTCAAGTCATACTACTCTGTGCAGGTGACCGACTGGCAGGCGTACCCCCACTACGGGAGCACCCAGGGGTTGCCACCGGTGGTCCTGCATGACAGCCTGTACTACCTGAACGGCGTAGAGTGGGCCGGCAGCGCCATGGAGATGAGCTCTGTGGCAGCCAAGAACATCGCACTTCTGGCCTACCACCGCTGGAGCCGGCAACTCGAGATGATTGACCAGAAGGACCTGATGCACAAGATCAAGACTGAGCTCGGCCATTGTAGTTTTCGTAAGGCCACCATGAAGCTGAATAAGTTCGTGACGTCTTCCCGCCGCAAGAACCGCAAGAGGCACTTCAATGCCCCGTCACACATTCGCAGGAAGATTATGTCTTCCCCACTGTCCAAGGAGCTTAGACAGAAGTACAACGTGCGATCAGTGCCCATTCGCAAAGATGATGAAGTTCAGGTGGTCCGGGGACACTACAAAGGCCAGCAGATTGGCAAAGTTGTCCAGGTCTACAGGAAGAAGTACATCATCTACATTGAGCGTGTGCAGCGTGAGAAGGCCAATGGCACAACTGTCCATGTCGGTATCCACCCCAGCAAGGTTGTGATCACCAGGTTGAAGCTTGACAAGGATCGCAAGAAGATCTTGGAACGCAAGGCAAAATCTCGCCAGGATGGCAAGGAAAAGGGCAAATACAAGGAAGAGACCATCGAGAAAATGCAGGAGTGAAAAAACACCTTTTGCTAGAAACAATAAAAGACTGTAAAAAATTGAATCTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467	KOW	KOW motif	Family	Interproscan
PF07156	Prenylcys_lyase	Prenylcysteine lyase	Family	Interproscan
PF13450	NAD_binding_8	NAD(P)-binding Rossmann-like domain	Domain	Interproscan
PF16906	Ribosomal_L26	Ribosomal proteins L26 eukaryotic, L24P archaeal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005756	Family	Large ribosomal subunit protein uL24, eukaryotic/archaeal	Interproscan
IPR005824	Domain	KOW	Interproscan
IPR005825	Conserved_site	Large ribosomal subunit protein uL24, conserved site	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR010795	Domain	Prenylcysteine lyase	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR017046	Family	Prenylcysteine oxidase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR041988	Domain	Large ribosomal subunit protein uL24, KOW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15944	FARNESYLCYSTEINE LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001735	Molecular Function	prenylcysteine oxidase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan
GO:0016670	Molecular Function	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	Interproscan
GO:0030327	Biological Process	prenylated protein catabolic process	Interproscan
GO:0030328	Biological Process	prenylcysteine catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-