Gene detail

Detailed information of KAJ8407880.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8407880.1	E3 UBIQUITIN-PROTEIN LIGASE RNF8	AAFF_1.1_unplaced_37	4556152	4577053	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00269240

ATGCCACTACTCTTCTTGGAAAGGTTCCCATGGCCTAGTTTGCAAACGTATACGGCCCTTAGTATGGTTCTGCTTGCCGGAAGTATTCTGAGCGCCTATACCTCTGTGACTGAACCGGCACTCGACATGTCAGAAGCGGATGACTCCCCGCCCAGCCCCGATGAGGACATGGAACACCAGCTTCACAACTTCGGGGATGGAGTGGCTTCTGATGTGCTGTGGTACCTAATTTCTGACAGCTTTTATGTTTGGGTGCTGGTGAATACCGCATGTTGTCTCCTCATGTTGGTTGCCAAGATGATCCAGTGTATAGTGTTTGGCCCTCTTCGAGTCAGTGAAAAGCAGCACCTGAAGGACAAGTTCTGGAACTTCATCTTCTACAAGTTCATCTTCATCTTCGGGGTGCTGAACGTGCAGACAGTGGAGGAGGTGGTCATGTGGTGCCTGTGGTTCGCAGCTCTGGTCTTCCTCCATCTCATGGTCCAGCTCTGCAAAGACCGCTTTgaatatctctccttctcccccaccATTCCAATGAGTAGTCACGTGCGTGTACTGTCCCTGCTCGTGTCCATGCTGCTGTTCTGCTGTGGACTGGCTGTCGTGTGTGGGCTGGTGGGACACTCGCATGGAATGCACACCATGGCCTTCATGGCTGCTGAGtgtCTTCTGGTAACTGTAAGGACTGGACATGTTATCATGCGTTACACCATCCACCTGTGGGATCTGAACCGTGAGGGCACCTGGGAGAGCAAGGGCACATACGTGTACTACACCGACTTCATCATGGAGCTGGCTCTGCTGTCCCTGGACCTGATGCACCACATCCACATGCTGCTCTTTGGCAATATCTGGCTCTCAATGGCCAGCCTGGTGATCTTCATGCAGCTCCGCTACCTCTTCCACGAAGTGCAGCGGCGCATCCGGCGCCACAAGAACTACCTCCGCGTCATCGACAGCATGGAGGCCAGGTTTGCAGTGGCCACTGGAGAAGAGCTGGCGGCCAACAGCGATGACTGTGCCATCTGCTGGGACGCCATGCAATCCGCACGCAAGCTGCCCTGCGGACATCTCTTCCACAATTCGTGCTTGCGCTCATGGCTTGAGCAAGACACCTCCTGTCCCACATGTCGCATGTCCCTGAACATCAGTGAGGGAAGCCGGGCTCAGGAGGCCCAACCAGGAGTGGCCCTGGACGATGCCATGGGCCCGGGGCCCGGGCCCGACCCCCGCCCGCACCTCAACCAGCACAATCACTTCTTCCACTTTGATGGTTCCCGCATTGCCAGCTGGCTGCCCAGCTTCTCAGTGGAAGTCATGCACACAACAAACATCCTGGGCATCGCATCGCAGGCTAACAACTCCCAGCTCAATGCCATGGCCCATCAGATCCAGGAGATGTTCCCGCAGGTGCCCTACCACCTGGTGCTGCAGGACCTCCAACTCACACGCTCGGTGGAGATCACTACTGACAACATCCTGGAGGGACGCATCCAGGTCCCCTTCCCCACCCTGGTGAGCTCCACCTCGGAGGAGCCAGTGGAGGCTGGCGGAGAAGCAGAAGGAGAGGGCGAGGCCGTGGCCAGTGAGCCGGAGCACTTGGAGGTCCGGGGCAGCCGCTTCTCCAAGTCTGCTGACGAGAGACAGAGGATGTTGATGCAGAGGAAAGAGGAGCTCCTTCAGCAAGCACGCAGGCGGTATCTGAGCAGGAGTCCCGAGGAAGGCGGTGAAGAAGACGACGGAGACGGCCTGCCTTATCTGGAGGAGGACGACGACCCCCCGGGCTCGGACACTGCGACCCTGCGGCGTCGCATGCTGGCGGCCGCAGCGGAGCGCCGCATGCAGAGGCAGCGAGACCCGCCCCAGAGGAGAAAGTGCAGTAAGAAGATGTTATCCTGGCTCGTGTCCAGGCCGGGACTAAGCCGCTGCATCCACACCGCGAGGTCAATGTTTTTATTAACGTTCTTCTTACTGACCTCCGGGTCTCACCTGAACAAGAGCGCATTGGAGCTGATGGCACAATATCCCCTTATTGATGGGCATAATGACGTTGCTCTGCAACTGAGGATTCTTCATAACAACAGACTTAGCCGAATTGACCTGCACAATATCAACAATGTTGCCACGGACATAAATCGACTGAGCACTGGTCACGTTGGAGGACAGGTGTTTTCGGCTTATGTGATGTGTACGGCTCAGGAGAAGGATGCAGTCAGGCTCACCCTGGAGCAGATCGATGTCATTCGTCGCATGTGCAGCGAGTACCAGGAGCTTGAGCTGGTGACATCAGCACAAGCTTTGAGGAGTTCTGAGAAGATTGCCTGCCTAATCAGCATAGAGGGAGGCCATTCCATAGACAGCAGCCTGCCAGCCCTGCGCATGTTCTACCAGCTGGGTGTGCGCTCCATGGCCCTGAcacacacctgcaacacacccTGGGCAGAATCGTCTTCAAAACATTATCAGTTTTATACAAGAAAAAACAATAATCTGACACATTTTGGTGAGGTGGTGGTGGCGGAGATGAATCGTCTGGGGATGATAATTGACCTGTCGCACAGCTCCTGGGGCACCGCCGAGGCAGTGCTGCGGCTCTCACGGGCCCCCGTAATCTTCAGCCACTCCTCCGCCTTCGCCGTGTGCGCCCACGAGCGGAACGTTCCAGACGGGCTGCTGCGCACGCTGaaagaaaagagaggtCTCGTTATGGTGAATTTGTACAGTGGGTTCGTGGCTTGTGGTGATAAAGGAAACGTCTCTATCACAGCTGACCATTTTGATCACATCAAAAATGTGATTGGAGCTGAGTCGATTGGAGTAGGAGGAGATTATGACGGGGCCTACAAGTTTCCTGATGGATTGGAGGATGTGTCAAAGTACCCTGCCTTGTTCCAGGAGCTTCTGCACAGAAACTGGAGTGAATCTGAGCTGGCTGGTGTCCTCCGGCTCAACTTCCTCAGGGTGTTTGAGGAGGTGGAACGAGTACGTGATGAACTGAACGGAAGTCATCCAATTGAAGACGAGATCCCGCTTTCAGAGGCAGCAAACCCATGTCGCCTGGTCCTCAAACCTCCAGTTCTGAAACTAGCCAAGTCTGCTTCTTCACATCGTACTAAAATAGTCCAAAGTAGTCTTCCTCTGTTTGCCATGTCTGCCGTACTGATCCAACACTTTGTTCTTGTGTAG

Transcript

AAFF_T00269240

TGGCGGTATGCACCTTTTATTGGCTTACATACTCCAATAAAATCCaccgaagaagaagaaaaagaaaataggaTGCACAAGTACCAGGGCTGAAAGTACAGTATTCGACCAACAGGTTACTGTCCGCCGACCTGGGAAATCTGATGTAACAACACAAGGGGGGGATAAACCACCAGCGTTTACTCTAACCTATGGCGTTTGAGAAGTTTGCTGGTCAGCAATTTAGCGAATCAGAATAACGTTTGCTAGCTAGGCCTACATTTTAATCTCATCAGATGTGTAGCTAACTaacgctagctagcaagctagtgtTGCTTTGAGAAACATTTCGAACGCGGCCGATGGATTGAAGCAAACAAGCAAGTTTCAACTTTAGACCTTCTCGGTTGGCAGCTAACAGCGTCACTCATGTGGGACATGAAGATCTTTCATTTTGTTAGCTGACTGATTCATGTTAGCTTGTTAGCTACCAATGCAACGTCAAAcgttgctaactagctagttaactataTCGTATTGAATGGGCGTGAGACTGAGAGGCAGTTTACAACTAAACAAATGAACTGTAACTACTTATCAGGAGGACGACGACTCAACACAGTCAGAACATTTCAATGGCTAACTCGGCTCGATAACTTTTTCATAGTGTGAATGTATGACAGTGACTGCCGACTCAGAACTAAACTGTTTGACAGGAGCAAGACATCTAGCTAACCTCCACGTAGAGGCTAGAGTAAGTTAGCCTTGGCCTTAATatctctagctagctagcacggCAAGTTACCATCAACATTGTACAGATAGTTTACATAGCTAGAAAGCTAGCTAACCAGAAACGTGTCAGTTCACCAGCAAAATTGCAACACCGCCACCGAGTTTTTTCGAAAACTTCTTAAACTTCAGCAACGCTACAATGCCACTACTCTTCTTGGAAAGGTTCCCATGGCCTAGTTTGCAAACGTATACGGCCCTTAGTATGGTTCTGCTTGCCGGAAGTATTCTGAGCGCCTATACCTCTGTGACTGAACCGGCACTCGACATGTCAGAAGCGGATGACTCCCCGCCCAGCCCCGATGAGGACATGGAACACCAGCTTCACAACTTCGGGGATGGAGTGGCTTCTGATGTGCTGTGGTACCTAATTTCTGACAGCTTTTATGTTTGGGTGCTGGTGAATACCGCATGTTGTCTCCTCATGTTGGTTGCCAAGATGATCCAGTGTATAGTGTTTGGCCCTCTTCGAGTCAGTGAAAAGCAGCACCTGAAGGACAAGTTCTGGAACTTCATCTTCTACAAGTTCATCTTCATCTTCGGGGTGCTGAACGTGCAGACAGTGGAGGAGGTGGTCATGTGGTGCCTGTGGTTCGCAGCTCTGGTCTTCCTCCATCTCATGGTCCAGCTCTGCAAAGACCGCTTTgaatatctctccttctcccccaccATTCCAATGAGTAGTCACGTGCGTGTACTGTCCCTGCTCGTGTCCATGCTGCTGTTCTGCTGTGGACTGGCTGTCGTGTGTGGGCTGGTGGGACACTCGCATGGAATGCACACCATGGCCTTCATGGCTGCTGAGtgtCTTCTGGTAACTGTAAGGACTGGACATGTTATCATGCGTTACACCATCCACCTGTGGGATCTGAACCGTGAGGGCACCTGGGAGAGCAAGGGCACATACGTGTACTACACCGACTTCATCATGGAGCTGGCTCTGCTGTCCCTGGACCTGATGCACCACATCCACATGCTGCTCTTTGGCAATATCTGGCTCTCAATGGCCAGCCTGGTGATCTTCATGCAGCTCCGCTACCTCTTCCACGAAGTGCAGCGGCGCATCCGGCGCCACAAGAACTACCTCCGCGTCATCGACAGCATGGAGGCCAGGTTTGCAGTGGCCACTGGAGAAGAGCTGGCGGCCAACAGCGATGACTGTGCCATCTGCTGGGACGCCATGCAATCCGCACGCAAGCTGCCCTGCGGACATCTCTTCCACAATTCGTGCTTGCGCTCATGGCTTGAGCAAGACACCTCCTGTCCCACATGTCGCATGTCCCTGAACATCAGTGAGGGAAGCCGGGCTCAGGAGGCCCAACCAGGAGTGGCCCTGGACGATGCCATGGGCCCGGGGCCCGGGCCCGACCCCCGCCCGCACCTCAACCAGCACAATCACTTCTTCCACTTTGATGGTTCCCGCATTGCCAGCTGGCTGCCCAGCTTCTCAGTGGAAGTCATGCACACAACAAACATCCTGGGCATCGCATCGCAGGCTAACAACTCCCAGCTCAATGCCATGGCCCATCAGATCCAGGAGATGTTCCCGCAGGTGCCCTACCACCTGGTGCTGCAGGACCTCCAACTCACACGCTCGGTGGAGATCACTACTGACAACATCCTGGAGGGACGCATCCAGGTCCCCTTCCCCACCCTGGTGAGCTCCACCTCGGAGGAGCCAGTGGAGGCTGGCGGAGAAGCAGAAGGAGAGGGCGAGGCCGTGGCCAGTGAGCCGGAGCACTTGGAGGTCCGGGGCAGCCGCTTCTCCAAGTCTGCTGACGAGAGACAGAGGATGTTGATGCAGAGGAAAGAGGAGCTCCTTCAGCAAGCACGCAGGCGGTATCTGAGCAGGAGTCCCGAGGAAGGCGGTGAAGAAGACGACGGAGACGGCCTGCCTTATCTGGAGGAGGACGACGACCCCCCGGGCTCGGACACTGCGACCCTGCGGCGTCGCATGCTGGCGGCCGCAGCGGAGCGCCGCATGCAGAGGCAGCGAGACCCGCCCCAGAGGAGAAAGTGCAGTAAGAAGATGTTATCCTGGCTCGTGTCCAGGCCGGGACTAAGCCGCTGCATCCACACCGCGAGGTCAATGTTTTTATTAACGTTCTTCTTACTGACCTCCGGGTCTCACCTGAACAAGAGCGCATTGGAGCTGATGGCACAATATCCCCTTATTGATGGGCATAATGACGTTGCTCTGCAACTGAGGATTCTTCATAACAACAGACTTAGCCGAATTGACCTGCACAATATCAACAATGTTGCCACGGACATAAATCGACTGAGCACTGGTCACGTTGGAGGACAGGTGTTTTCGGCTTATGTGATGTGTACGGCTCAGGAGAAGGATGCAGTCAGGCTCACCCTGGAGCAGATCGATGTCATTCGTCGCATGTGCAGCGAGTACCAGGAGCTTGAGCTGGTGACATCAGCACAAGCTTTGAGGAGTTCTGAGAAGATTGCCTGCCTAATCAGCATAGAGGGAGGCCATTCCATAGACAGCAGCCTGCCAGCCCTGCGCATGTTCTACCAGCTGGGTGTGCGCTCCATGGCCCTGAcacacacctgcaacacacccTGGGCAGAATCGTCTTCAAAACATTATCAGTTTTATACAAGAAAAAACAATAATCTGACACATTTTGGTGAGGTGGTGGTGGCGGAGATGAATCGTCTGGGGATGATAATTGACCTGTCGCACAGCTCCTGGGGCACCGCCGAGGCAGTGCTGCGGCTCTCACGGGCCCCCGTAATCTTCAGCCACTCCTCCGCCTTCGCCGTGTGCGCCCACGAGCGGAACGTTCCAGACGGGCTGCTGCGCACGCTGaaagaaaagagaggtCTCGTTATGGTGAATTTGTACAGTGGGTTCGTGGCTTGTGGTGATAAAGGAAACGTCTCTATCACAGCTGACCATTTTGATCACATCAAAAATGTGATTGGAGCTGAGTCGATTGGAGTAGGAGGAGATTATGACGGGGCCTACAAGTTTCCTGATGGATTGGAGGATGTGTCAAAGTACCCTGCCTTGTTCCAGGAGCTTCTGCACAGAAACTGGAGTGAATCTGAGCTGGCTGGTGTCCTCCGGCTCAACTTCCTCAGGGTGTTTGAGGAGGTGGAACGAGTACGTGATGAACTGAACGGAAGTCATCCAATTGAAGACGAGATCCCGCTTTCAGAGGCAGCAAACCCATGTCGCCTGGTCCTCAAACCTCCAGTTCTGAAACTAGCCAAGTCTGCTTCTTCACATCGTACTAAAATAGTCCAAAGTAGTCTTCCTCTGTTTGCCATGTCTGCCGTACTGATCCAACACTTTGTTCTTGTGTAGTAGTCCACTGTTTAAATTCTCACCACCAGTTTGCACTAAcctaaaaaatacagaaaagaaGTGCAAATGGGGAGAAAAGGAGAGCCCTCCATTTCAGGTTTTGATGTTGTAATTTGGGCATTGCTGATGGATGAAAAGTGAAATTCTGATCACtgtttaaatgctttttttccacGTCATTGCTCCCAGGAAATATCCCAGCTCAGAGGGAATATTCAGTGTGTATTTAACTCCGTGCCCTGGTGAAGTACCGCTCTTagatttgtatatttttcattttactatGAATCTAAATAGATCAGCTTGAAACTCGACCAAGTCTAAGTCTCCTCAGTCCTACAAAGAAAGCATTGTATCATATCATTTTATCTGATGAGTAATGTACAGGTTTCACTTTGTGCATTGTGcatatgtactgtattgtattactAAAGGATTTATATATTCAGaattatatcattttaatatatgcaAACATGATTTCACTCATTTAAAAGACACCTTTTCATAATCTGTCCAGtaatatgcaataaaatgcatttaaaaacaatgtttaattaattCCAAAACTATCATgcagaaaatagttttgcaatagcaaaaaatattttaataggtTAATAGCCTTGCTTTTTGCAGCACACTTTCATTGATTAATGACACA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|CUE
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01244	Peptidase_M19	Membrane dipeptidase (Peptidase family M19)	Domain	Interproscan
PF02845	CUE	CUE domain	Domain	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF18442	G2BR	E3 gp78 Ube2g2-binding region (G2BR)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000180	Active_site	Membrane dipeptidase, active site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR008257	Family	Peptidase M19	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR040675	Domain	E3 ubiquitin-protein ligase AMFR, Ube2g2-binding region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15067	E3 UBIQUITIN-PROTEIN LIGASE RNF8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070573	Molecular Function	metallodipeptidase activity	Interproscan
GO:0070936	Biological Process	protein K48-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-