Gene detail

Detailed information of KAJ8407470.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8407470.1	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	AAFF_1.1_unplaced_38	2077438	2083671	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00273270

GAGTTTACAGCAGCTTCTTGTTTTCCTACGCAACTCCAGAAGTAGAGAGTAGATAAGTAGAACTTATCTATCGACATTGATCATTGTCTATGTGCATTCATACGTTTGTTGTGGATATCTGTTACTTCTGTATTTGAACACACGAGATACCATTTCAACCTTTGTCAAGAGCTTTCAATTGCCGTCACTATGATAGCTATGTGATATACTGTTTCACTAAAAACCGATTGGTACATATTCTTACACTAAATGATTACCTTTACGATAAACCAATCTGCTCTCTGATCATGATCGTTCAGCTGAAACGTAAAAAAATGATTCCAGTAAATTTAGAAAGTTAAAAGTCATAATCGAATAGAAGCAACTTCTCCAAAACCACCGGAAACCACATACGCATGCGCAAGAATCTGCTCGCCACATTGTATTGTATCCGTAGTAGTTTTTGTAAAATACACGCAGCTTTACGGGATACATACATATTTCAAGTGGTCTTTATCAATTTTACGTTAAGCAATGCGTTAATCCAACAAACGCATGGCAAGTAGTCATTATAATATCCCAAACTTGCCAGGAAATAAAGTAGACTACCAAAAAATTCCGCATTTCAGGGGGGGAAGTCCCGAAAGGAAATCCCCCCTTAGTGTTGGAATATTATTTCGAAATTGAACGCACCCTATCTCTTACACAGTGACCTTCTCTCTAATTAGAAGATTCGCGGCTGAGCCTATGACAAGCAAGCAGTACAAAGTGCGTGTGAATTGAAACTTGAATTGTTGACAGCGACTGCATAGTTGTCACTGCAGATGTCCATACAAAGGATCTGATTTGTTGATCTGATTTTACGACGGAGGCTATGGAAAATATCATTGCGGAAAATGATGCGTTGAAAACCAAATTACAGAGTTGCTACACGCTGAAAACTTTCTATCACGAAGCACGGCAGGAAATCGCCTCGCTGAGCCATCAGATATACATCAAAGACAGCAGAATTGCAGATCTTGAAGCGAGATTGAGAAGATACGAGGGCACACGTATTACGGTGGAAGGAGATGAACCTGTGGTATTTGGCCCTTCTAAACCTTTGTTGGGGAGCTTGTGTAAAGAAATACATAGTCTAAAACAaagactgacagacagagagacagacgctGCTCAGCAATCGGACACAAGCAAACTAGAGATCGAGCGGCTGCAGCAGAGTGCGTGGGAACCGCGCCAGAAGCAGGCGGAGATCCGCAGGCTCCGGCGGGCGCTGACGGAAGAGGAGCGGGCCAGGGCCGACGGCGCAGTGCTCTGCAGCTCGCTGGCGGAAGAGGCCGACCAGCTGAGGGCCCAGCTCGGGGCCACGGTCAGGGTGTGTCAGGAGCTGCTGAAAAGGCTGGAGAGTGAGAGGCAAGGGGATGGCTCTGTGGAGAAACAGACTCATGATCTACAGGTCAAAGAGTTTGTTGATTCCCCAAAAGCTGATCATCTCAACACCTTAGTGTGCAAACTACAAGAGGAAAACAGAGATCTGAAGCAGAGAGTTGCATTTGTGGAAAGCCTGAATTCCAAATGGCAGAGGTACGACTTGGGCAGAGAGGAGTACGTGAAAGGACTGTGCAAGAGGCTGAAGGAGTCCAAACCCCTGGCTGgcctgggggcggggccaggggcgGGGCCAGGCCCGGTCAGCAGCGCTCTGCTGCAGCAGGAGGTCGTGAGGCTGAACCGCCTCCTGGATGAAAAGATGAGGGACTGCGCTAGGCTCAGCAGGGAGCTGGAGGACTCCAGGAAACGGGACCAGGAACACATCCAGACCCTGGAGCAGCAGGTCCTCATCTATACGGATGACTTTAAGTCTGAGCGCGCCGATCGGGAGAGGGCGCAAAGCAGGGTGCAGGATCtgcaggaggaggtggtgcgTCTCCAACTGAAACTTCGTCGAAAACAGgagGCGAGAGATCCGCCCCCCGCGTGCTGGGTGCAGATCGGAAACAGAATGTCTGCGCACCTGCAGGTAGATGCTGCTGAGCCATTGCTAGGGAACAGTGCACTCCCTGACCAGTCGGGGCCACAGCGGTCAAGTGGTCAGTCAGCGCAAAGTGCAGTCTGGACCGGTCGCCAAGGAGTAACAGACCTGCAGTGCCCGCGGTGTTTCATTTCGTACGACGACGATCGCACAGCGGAGTACCTGAAGCACTGTGAGGACTGCGCCAACTTatgacaggaaacaggaagggaCATCAAGAGCTCATTCAAGTAAAAGCACTACGTGTACAAGACGTGCAGAATTGGACATCTTTCGACTGTTTCCAAAGAACTCACCTCTGATATATGAACATTTCCATTGTTTGTACTGTTTTGGAGTAGTAGTAAGTACGTAAGCAGGCGTGAGCTTTACAAATTGGGAGTTGTACACTTGTTGTAGACACCCCAGTTTAAGCCAAAATTCAGCGTTTGAAGCACAGTATTTAATTTTATTACAGTCTGTGTAGAGATGGCTTGTTTCTATTTTGGTGTTGTGAAATAGTAGAATTTCACTCACATGGCACATAAGTTATTTTGCGTGACAGATAATCAAATCATATAATTGTTAACATTGTACATTTCTGTatcaattgtaaaaaataaagggcTGTTtgctacatttaaaatacagtCGTATATTCAACCAATTGGACCTGAAACAAAAGCCAGTCCCCAGATACACctcaataacaaatattttttgctcCATTCTCTTCCACATTGTACTTATTTGAGCATTGTCTTTCAGAGTGCAGTGAACGCTGCACTTTCTTCACATACACGTATGCCAGAAATCTGCCAGCATCTGGCTGGTTCCAGCATATTTAAACATTGATGCAAAGAAAAAGTTAGTAAAACATGCATTTCAAAATGTGTGACAGTATCATGTGTCAATCATGAAATGCATTGTCCCATTACTGACCTATTGCAACGTTTTGGTCTTTTGTGTAATTATTGCAAATGAAATATCCATATTGCAGTCCAGGAATATACCCTTTCTCTAAAGATTCCTTAAAGGTGCATATTTGATGAAAagctaacataacataaaataaattgtaaagcAGTTTCACAATTTAGACCGCAGACTAAGGTCATTGGGTTTTAGTTCTGGGCGGGCCGGGGGATTTCCACCTTGCATATGATAAGGTGCAAATTATGACCTAAAAATAAATTCGAGGGTATATTGTTCAATGTTGTAAAGctgtttaatgttatttaaaaatcatatttttgtaataaacatATATTGCTTTTGGAGAGCAATATTTA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBAN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12180	EABR	TSG101 and ALIX binding domain of CEP55	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022008	Domain	TSG101 and ALIX binding domain of CEP55	Interproscan
IPR034735	Domain	NEMO, Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31882	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034134	Biological Process	toll-like receptor 2 signaling pathway	Interproscan
GO:0034138	Biological Process	toll-like receptor 3 signaling pathway	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071222	Biological Process	cellular response to lipopolysaccharide	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-