Gene detail

Detailed information of KAJ8406207.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8406207.1	PROTEIN PATCHED	AAFF_1.1_unplaced_44	1752604	1863746	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00304380

ATGACGCACGTCCTCGGTGGCCGGAGGGGACGCTGCTTTTCCCGAAACCGTGGAGGCGGGCGCGGTCGTCGGCGGGACGGACGCAGGGAGCGCGTCGAAGCCACACGGGCAGTCTGtcggggcgggcgggcgggcggggagGACTGCGGACCCAGGCAGCTACCAGCGAAGCTCATCTCCTTTCCAGAGAAAACAAAGCTGAGCCACATTCCCAGAGTTCAATTTGCTGTTACATCGGAGGTCTGCGAATTGGGGTTTGAGTCGTGTCTCTCAACCAAGGAGCTATCTAGCTTCAGCCAGGTGAGGGAGATGGAGCTACAGGCGGTGTTGATGGCAGCTCGAGGGGGGTCTCGGATGATGGAGCTGACCTACAGCGTGCCTAAACCATTGCTTCCGGTCGGGAACAAGCCTCTTATTTGGTACCCCCTCAACCTCCTGGAGAGAGTGGGCTTTGaagAGGTCATCGTTATCACGACCAAGGAAGTCCAGAAGCTTCTGAGCACGGACACCAAGATGAAGCTGGACGTGGTGTGTATCCAGGACGATGCCGAGATGGGCACGGCCGATGCCCTCCGGCACATCCAGCAGAAGATCAAGACGGACGTCCTGGTGGTGAGCTGTGACCTCATCACGGACGTGGCGCTGCACGAGGTGGTGGACCTGTTCCGGGCCCACGACGCCACCCTCTCCATGCTGATGAGCAAAACCCACGAGTTCACAGAGACCGTCCCGGGCCAGAAGGGAAAGAAGAAAACCGGGGAGCAGAGGGACTTTGTGGGGGTGGACGCCTCAGGAAAGAGGCTCCTCTTCATGGCCAACGAAGCCGATCTGGACGAAGACCTTGTCGTCAGGAAGTCCATCATGCGCAAACACCCGAGGATGCGCATCAGAACGGGCCTGCTCGACGCGCACCTGTACTGCCTGAAGAAATCCGTGGTCGACTTCTTGGCCGACAACAAgtCCATCTCTTCCATTCGTGGTGAACTGGTTCCTTATTTGGTTCGCAAACAGTTCTCCAAATCTGCCAGCTCACAAAAGAACAAGGAGGATTTGGATCAGAACCTTAAGAAAACCGACACTAACACAAACGCGGAGATCCGCATCTCCCCCACGgacgaggagcagctgctgctgGCCCGTGAGAGGTCCTGCTGGAACGATCACCGCGGCGACATGAGCGACGCCTACCACGGCTGCAAGCTGCGCTGCTACGTGCACATCATGGAGGAGGGCATGTGCTACCGCGTCAACACGCTGGCGGCCTACATCGAGGCCAACCGcatgGCCCCTAAGCTGACGGAGGAGCCCCCGGTCCACCCAACGGCATCCGTCTCCGAACGCAGTCTGGTTGGTGCCGACAGCATAATCGGAGCTTCGTGTCAGATTTCGGACAAGACATCGATCAAGCGCTCGACGATTGGCGCGTCCTCCGTCGTCAAGGAGAAGGTCAAAATCGCCAACTCCATAATCATGAGTGGAGTCACCATCGAAGAGGGGTGCAACATCCAGGGCAGCGTGATCTGCAGCAACGCCGTCATCGGACGAGGCGCCGACATCAAGTACTGCTTCGTGGGGAACGCGCAGCGCATCGAGCCCGAGGCTCCCGGACCGGCTATCCTGGTGAGGCTGGAGCTGATTAGCCGGGCGCAACCTCTGCAGCGGCAGCTCATTGAACGGCTCCCCGAAAATCCCAAATTACAAGCCGGACCCCTgtactcccccacccccccggccTGCTGTTCAGAGCACAGCGAGGACCCCAATTCAAAGGAGAAAccAACCCCCGTCCGCGCTACCCCCCCGCCGGATAAAGTCCAGGCTCCCCCGCGGGTAAACACATTACACGTCTCCCCGGGACGTGTGGACCGGACCCTGTGCTGGAGACCACCCTGGCAGGCAGCGACAGCAGACCCACGAGCGCACAGACAGGTGGCGGTGATCTGCAGAAAACCCGAGTGGGAATCTGGCTCTTCCTCTTTGGGGCACAGCAGGGACGGAGACCATGGCCCTGCGCTGACCGCTGTCGACCGCTCGTCTCTCGGTGTCGGGTCGGCCGCCATttttccctccccgctccctggcGAAGGCCGAGGCCCCTCCTCCGTGGCTGTCGTCTCGACACAgtccccgtccccgtccccgtcccgCTTACGAGCTCTGGCAGAGGGTGTTTTTTCGGGGGCGGCGTATTTAGACAAAGCTTCACACCGAGTTGCCCCGGCTGTCCCGGGACTGGACGCTGGGCGCTGTGTTCAGTGTCACTCTCCACCCTCCCCGGCTGAACGTGACAGATGCGTGTTTTCCAGGGCCCGGGGATCAGATGTCAACCGGCCGATCGTATATCAGGCCAGGCTGTCTCTGGGTCAGGCCCAGTGCgtctcggtgagagAGAATGGAGAGGGGAAGGCTGTGGGGCAGAAAGCCCCGTTGTGGATTCGGGCGCGGTTCCAGGCTCTCCTCTTTTCTCTGGGCTGTCAGATCCAGCGGCACTGCGGCAAAGTTCTGTTCATCGGGCTGCTGGTGTTCGGCGCCTTGTCGGTGGGATTGCGGGTCGCGGCCATCGAGACGGACATCGAGCAGCTCTGGGTGGAAGcTGGTAGTCGAGTGAGTCGCGAGCTTCGCTACACCAAGGAGAAGCAGGGAGAGGAGGCCGTGTTCACCTTTCAGATGCTCATACAGACCTCCAAACAGGAAGGCACAAACATTCTTACCCAGGAGGCTTTGCTGCAGCACCTAGAGGCCGCGCTGGCCGCCAGCAAGGtccaggtgtccctgtacgGAAAGTCATGGGATCTCAATAAAATCTGCTACAAATCCGGCGTACCCATCATCGAGAATGTCATGATCGAAAGGATGATTGACAAGCTTTTCCCCTGCATGATCATCACTCCGCTGGACTGCTTCTGGGAGGGCGCCAAGCTCCAGGGGGGGTCCGCCTACCTGCCGGGAATGCCCGACATCCAGTGGATGAACCTGGACCCCCTCAAGCTGATGGAGGAGCTCAGCCAGTTCACCTCTCTGGAGGGCTTCCGCGAGATGCTGGACAAGGCCCAGGTGGGCCACGCCTACATGAGCCGGCCCTGCTTGGACCCCAATGACCTCGACTGCCCCCAGAGCGCCCCCAACAAGGACCTGCGCCAGAGCCCTGACATCGCCCGGGAGTTGCAGGGTGGTTGCCACGGCTTCTCCAAGAAGTTCATGCACTGGGAGGAGGAGCTTATCCTCGGCGGAAGGGCAAAAACCTCCCAGGATGCTTTGCTGAGTGCCGAGGCCCTCCAGACCATGTACCTTCTCATGAGCCCCAAGCAGCTGTACGAGCACTTTAAGGATGACTACGAGATCCACGACATCAACTGGAACCAGGAGAAGGCCACTGCCATCCTGGCGTCCTGGCAGAGGAAGTTTGTGGAGGTGGTCCACCAGAGCATCCCCCACAACTCCTCTCAGACCATGCACGCCTTCTCCACCACCACCCTCAACGACATCATGAAGTCCTTCTCCGACGTCAGCGTCATCCGCGTGGCCGGCGGCTACCTGCTCATGCTGGCCTATGCCTGCGTGACCATGCTGCGCTGGGACTGCACCAAGTCCCAGGGGGCAGTGGGGCTGGCGGGGGTGCTCTTGGTGGCGCTGTCCGTGGCAGCTGGCTTGGGCCTGTGCTCTCTGCTGGGCCTCTCCTTCAACGCCGCCACCACACAGGTGCTCCCTTTCCTGGCTTTGGGGATCGGTGTGGATGACATGTTCCTGCTGGCccactccttcacagagacaggCTCCAACATCCCATTCAAGgATCGGACGGGCGACTGCTTGCGTCGGACGGGCACCAGCGTGGCCCTCACCTCCATCAACAACATGATCGCCTTCTTCATGGCAGCGCTCGTGCCCATCCCCGCCCTGCGGGCCTTCTCCCTGCAGGCTGCCATAGTTGTGGTGTTCAACTTCGCCATGGTGTTGCTCATCTTTCCCGCCATCCTGAGTTTGGACCTACACCGGAGAGAGGACAAGAGGCTGGACATACTGTGCTGCTTCTACAGCCCATGCTCTTCACGGGTGATCCAGATCCAGCCTCAGGAGTTCTCCGATGCCAACGACAACCACACGTACCCCCCAACATCTCCGTCCTACATCGgccccaccatcaccaccagcaCCCAGATCACCACCACCGTGCAGGCCTTCACCCAGTGCGACGCCGCCGGCCAGCACATCGTCACCATCCTGCCACCCACCTCCCAGATCTCCACCAGCCCCCCCTCCGTCCTGCTCTTCGGGCCGTCCAGCTCCACCCGCGACCTCCTGGCCCAGGTGGACGAGACCAAGGAGGAGCGCGAGTGCGTTCCCCTCCCCTTCTTCCGCTGGAACCTGTCAGACTTTGCCCGGGAGAAGTACGCCCCACTGCTGCTCAAGCCTGAGACCAAGGCTGTAGTTCTGGTCCTGTTTGTGGCACTGCTGGGCCTCAGCCTTTATGGAACCACCATGGTCCATGATGGACTCTACCTGACGGACATTGTGCCCCGCGACACCAAGGAGTACGACTTTATCTCTGCCCAGTTCCAGTACTTCTCCTTCTACAACATGTACCTGGTGACTATGGCCGACTTCGACTACGGCCGATCCCAGCGGCAGCTCCTGCAGCTGCACACCGCCTTCAGCTCTGTCAAGTATGTGGTGCGAGACGGGGACCAGCAGCTGCCTCGGATGTGGCTGCACTACTTTCAGGACTGGCTGAGAGGCCTGCAGGCTGCGTTCGACGCTGACTGGGCTGCTGGCCGGATCACCTGGGACAGCTACCGCAACGGCACCGAAGACGGCGTGCTGGCCTACAAGCTGCTCATCCAGACCGGCTCCAAAAAGGACCCCTTCAACTACAGCCAGCTGACCACTCGTCGCCTGGTGGACGAGGAGGGCCTGGTCCCCCCGGAGATCTTCTACATCTACCTGACTGTATGGGTCAGCAATGACCCCCTGGGCTACGCCGCCTCCCAGGCTAACttctacccccacccccgcgAGTGGATCCACGACAAATACGACACCACCGGGGAGAACCTGCGCATACCAGCGGCCGAGCCCCTGGAGTTCGCCCAGTTCCCCTTCTACCTGAACGGCCTGAGGCAGACGTCGGACTTCATCGAGGCCATCGAGAGCGTGCGCTCCATTTGCGAGGAGTTCGCCCGCAAGGGCGTCCCCAACTACCCCAACGGCTACCCCTTCCTGTTCTGGGAGCAGTACATTGGCCTGCGCCACTGGTTCCTGCTCGCTGTTAGCGTTGTGCTGGCCTGCACCTTCCTGGTGTGTGCCGTCCTCCTGCTCAACCCCTGGACCGCCGGCGTCATTGTCTTCATCCTGGCCATGATGACGGTGGAGCTGTTTGGCATCATGGGCCTGATCGGCATCAAGCTCAGCGCCATCCCCGTGGTCATCCTCATCGCCTCCGTGGGCATCGGGGTGGAATTCACCGTCCACGTCGCTCTGGGTTTCCTGACGGCGATCGGGGACAGGAACCTGCGTTCGGCGGTGGCGCTGGAGCACATGTTCGCCCCTGTGATGGACGGTGCCGTCTCCACACTGCTGGGGGTGCTCATGCTGGCCGGCTCCGAGTTCGACTTCATCATGAGCTTCGTCGGGTTAGTGAGGTGGGTGCCCAGCCCTCGCCTGGTCTtaggcccccagcccccagagTCCGAGCCCAGGCCTGCCTGCTGTAAACACAGGGGTGCCTCGCCTCACCGCGCGCTGAAACAGGATATCTTCCATGGCGGCCCAGCGGTGATAGATGAGGGCTCCCAGAGGGAGACCGAGCACTGCCAAGCTGGAGCCCAGGAATTCCTCCAGCTTGTCAGGCCGCCAGTGGAGGGGATGCAGGGAGAGGAAATGGAGGGAAAAGCAAAGAGAATAGGGCCGGGTCTAGAGCGAAAGTCCAGAGGGGGTCTGTGCACGGGGGGTTTGGTGGGGACAAGCCCCCATCCTGCCCGCTGTGCCCCCGACCCCTGCAGCCCGCCTGCCCACCCCTTCCCCggagcccctcccccacccatgAACCACCACGGGTACTACGCCGGGCGCTACCCACAGGGCCCCCGCCACCAAGCCTTTTCCGAGGCTGAGGACTCGGAGTACTACTCCGAGACAACCACCACGTCCGGCCTGGGAGAGGAGGAGTACAAGTACTGCGACCGCAGTGCCTACATCACCCCCCCAACACCTGCGCCCACCACCCACATCCTGCTGGAGGCTAGCAAGAACCCCAGCTTCCCCAAACTCACGGTGGTAAAGCCATACAGCGAAGGTCCGGACGTCGCCACCAGGAAAGAACATCTAAACGGACCGAGTCAACCCACCGTCACCTCAGTCAGCTCTCAGATTGCTCGATGGGATAAAAAACAGGATTATACCCAAGACCAGGGACCCAAGAGGCAACATTTACCCAGCGACAGACCTCAGGGTCCTGGCAGGACTACTCACTGTGGCCCCAGGTCTCAATACAGTAGTAGGCCGCATCATAACAGGACTACGATGCCGGTCTACAATGCAGGAACCAGAGTTCAGGGGCCCAGTAGTGCTGTCACTATGGTTACCGCCACCGCCTCGGTGACGGTAGCCGTGCACCCCAGCTTGCCGGGGTCTTACAGGGGTTACACGCACGAGGGATTTGAAGACAGCGAAACAGACTGTTTTGAGGACACACTGGGGATGTCGCAGACTCACGGGAAAGCTACCGATAATTCTAAGAAGGGCACCTTGGAGCTACAAGACCTGGAATGTGACGAAAAGAGGCAGCATCCCACTGACCAAGCTCTAGGTGTCGGCTACCTTGGGCCCGGGCTGAATCTGATATGCCTGCGTCCTTTTGAAGTCACTGCCATGGCCcaagaGTGTCTCCAAGCTCGCCAAAAGACATGGCACTACCCCAAGAAGGCAGTGGTGAATGCAAATGATTCCAGTCTCCTGAAGTTGAGGACTGCCCCAGTGCTGGGCTCCAGCCGGGCCCAGTGGAGCCCACGCTGCATTAAACAAATGGGGCCCCTGGCCCAGTCCTGTTCCAGAAAGcaagataacgacccgaaacacaccttgaagttgtgcaagaactacctggtgaaggaggaacgtgaaggacaactcaaactgaagacctggcctgcccagtgtccagacctcaatcccatagaaattgtatgcgacaaactggacagaagaaatcgcccctgctcTGCGCACATATTCGAAAAGGAGCGACGGTTTCGGGGTGTCGGGCGCCGAGTCATCTGCGTCAATAACGGATCTAAACCTCACGAGGGCCTGCCGTACAGTGCCGTGGAGGTTTGGGTGCATGGAGCAAAAGGCGtgcgggggaggaggaggaggatgggagACCCCACAGAAGGCCAGGcagagtggggtgggggtcatGCATACTGCCCCCCCCAATCCCCCAGCTGTCCCTTGCTGATGTCATGTTAG

Transcript

AAFF_T00304380

Protein

KAJ8406207.1

MTHVLGGRRGRCFSRNRGGGRGRRRDGRRERVEATRAVCRGGRAGGEDCGPRQLPAKLISFPEKTKLSHIPRVQFAVTSEVCELGFESCLSTKELSSFSQVREMELQAVLMAARGGSRMMELTYSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKEVQKLLSTDTKMKLDVVCIQDDAEMGTADALRHIQQKIKTDVLVVSCDLITDVALHEVVDLFRAHDATLSMLMSKTHEFTETVPGQKGKKKTGEQRDFVGVDASGKRLLFMANEADLDEDLVVRKSIMRKHPRMRIRTGLLDAHLYCLKKSVVDFLADNKSISSIRGELVPYLVRKQFSKSASSQKNKEDLDQNLKKTDTNTNAEIRISPTDEEQLLLARERSCWNDHRGDMSDAYHGCKLRCYVHIMEEGMCYRVNTLAAYIEANRMAPKLTEEPPVHPTASVSERSLVGADSIIGASCQISDKTSIKRSTIGASSVVKEKVKIANSIIMSGVTIEEGCNIQGSVICSNAVIGRGADIKYCFVGNAQRIEPEAPGPAILVRLELISRAQPLQRQLIERLPENPKLQAGPLYSPTPPACCSEHSEDPNSKEKPTPVRATPPPDKVQAPPRVNTLHVSPGRVDRTLCWRPPWQAATADPRAHRQVAVICRKPEWESGSSSLGHSRDGDHGPALTAVDRSSLGVGSAAIFPSPLPGEGRGPSSVAVVSTQSPSPSPSRLRALAEGVFSGAAYLDKASHRVAPAVPGLDAGRCVQCHSPPSPAERDRCVFSRARGSDVNRPIVYQARLSLGQAQCVSVRENGEGKAVGQKAPLWIRARFQALLFSLGCQIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEQLWVEAGSRVSRELRYTKEKQGEEAVFTFQMLIQTSKQEGTNILTQEALLQHLEAALAASKVQVSLYGKSWDLNKICYKSGVPIIENVMIERMIDKLFPCMIITPLDCFWEGAKLQGGSAYLPGMPDIQWMNLDPLKLMEELSQFTSLEGFREMLDKAQVGHAYMSRPCLDPNDLDCPQSAPNKDLRQSPDIARELQGGCHGFSKKFMHWEEELILGGRAKTSQDALLSAEALQTMYLLMSPKQLYEHFKDDYEIHDINWNQEKATAILASWQRKFVEVVHQSIPHNSSQTMHAFSTTTLNDIMKSFSDVSVIRVAGGYLLMLAYACVTMLRWDCTKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATTQVLPFLALGIGVDDMFLLAHSFTETGSNIPFKDRTGDCLRRTGTSVALTSINNMIAFFMAALVPIPALRAFSLQAAIVVVFNFAMVLLIFPAILSLDLHRREDKRLDILCCFYSPCSSRVIQIQPQEFSDANDNHTYPPTSPSYIGPTITTSTQITTTVQAFTQCDAAGQHIVTILPPTSQISTSPPSVLLFGPSSSTRDLLAQVDETKEERECVPLPFFRWNLSDFAREKYAPLLLKPETKAVVLVLFVALLGLSLYGTTMVHDGLYLTDIVPRDTKEYDFISAQFQYFSFYNMYLVTMADFDYGRSQRQLLQLHTAFSSVKYVVRDGDQQLPRMWLHYFQDWLRGLQAAFDADWAAGRITWDSYRNGTEDGVLAYKLLIQTGSKKDPFNYSQLTTRRLVDEEGLVPPEIFYIYLTVWVSNDPLGYAASQANFYPHPREWIHDKYDTTGENLRIPAAEPLEFAQFPFYLNGLRQTSDFIEAIESVRSICEEFARKGVPNYPNGYPFLFWEQYIGLRHWFLLAVSVVLACTFLVCAVLLLNPWTAGVIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAIGDRNLRSAVALEHMFAPVMDGAVSTLLGVLMLAGSEFDFIMSFVGLVRWVPSPRLVLGPQPPESEPRPACCKHRGASPHRALKQDIFHGGPAVIDEGSQRETEHCQAGAQEFLQLVRPPVEGMQGEEMEGKAKRIGPGLERKSRGGLCTGGLVGTSPHPARCAPDPCSPPAHPFPGAPPPPMNHHGYYAGRYPQGPRHQAFSEAEDSEYYSETTTTSGLGEEEYKYCDRSAYITPPTPAPTTHILLEASKNPSFPKLTVVKPYSEGPDVATRKEHLNGPSQPTVTSVSSQIARWDKKQDYTQDQGPKRQHLPSDRPQGPGRTTHCGPRSQYSSRPHHNRTTMPVYNAGTRVQGPSSAVTMVTATASVTVAVHPSLPGSYRGYTHEGFEDSETDCFEDTLGMSQTHGKATDNSKKGTLELQDLECDEKRQHPTDQALGVGYLGPGLNLICLRPFEVTAMAQECLQARQKTWHYPKKAVVNANDSSLLKLRTAPVLGSSRAQWSPRCIKQMGPLAQSCSRKQDNDPKHTLKLCKNYLVKEEREGQLKLKTWPAQCPDLNPIEIVCDKLDRRNRPCSAHIFEKERRFRGVGRRVICVNNGSKPHEGLPYSAVEVWVHGAKGVRGRRRRMGDPTEGQAEWGGGHAYCPPQSPSCPLLMSC

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00483	NTP_transferase	Nucleotidyl transferase	Family	Interproscan
PF02460	Patched	Patched family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731	Domain	Sterol-sensing domain	Interproscan
IPR003392	Family	Protein patched/dispatched	Interproscan
IPR004766	Family	Transmembrane receptor, patched	Interproscan
IPR005835	Domain	Nucleotidyl transferase domain	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46022	PROTEIN PATCHED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005119	Molecular Function	smoothened binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008158	Molecular Function	hedgehog receptor activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045879	Biological Process	negative regulation of smoothened signaling pathway	Interproscan
GO:0097108	Molecular Function	hedgehog family protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-