Gene detail

Detailed information of KAJ8406058.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8406058.1	TRANSCRIPTION FACTOR COE FAMILY MEMBER	AAFF_1.1_unplaced_45	3637153	3705253	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00309460

ATGCTAATTGACGAGGCGGGCGATGGGACTCTCTACTCCTGGAAGACAAATAACGATAATAAAACGGCGCCCTCACTGGCCCGGGCTGTTTGGAGAGGTCCCTTTTCGCTGCGTGAGCGCGGCGTGCTTGTAGAGGGCCGGGAGGTCTGCCGGACCGCGGCGCGGCAGATCGGCAGCCGAGCAGCGCCGCCCCCTCTCCGGGCCCTGTTGCTCGCGCGACACAGATGTCTGTCCGCCTCCGGAGAACGGACTTCAGGCGCCCACGCTGCTATCGCCGCGCGACTGCGCCCCGCGGGCTTGTGGGAGCAGGTCATGAGCAGGGGATCCAGTGTCCTTGCCCATCGTGTATCACTCTCTAAGTATCTGGCCGCTGACAGCAGGCGCACCCTGCACTGTCACACTGCGGTGGGGACAGGGGACACAGGACGGGGCGGGTTCTTCCTGAAATTCTTCTTGAAGTGCAACCAGAACTGTCTAAAGAACGCGGGGAACCCACGGGACATGCGCCGCTTCCAGGTGGTGGTCTCCACGACGGTGAGCGTGGACGGCCACGTCCTGGCCGTGTCCGACAACATGTTTGTGCACAACAACTCCAAGCACGGCCGGAGGGCCCGCAGGCTCGACCCCTCCGAAGGCACGCCATCTTACCTGGAACATGCCACACCCTGCATCAAAGCCATAAGCCCCAGTGAAGGATGGACGACAGGGGGCGCCACCGTCATCATCATCGGGGACAACTTTTTTGACGGCCTGCAGGTCATCTTCGGCACCATGCTAGTGTGGAGCGAGctcATCACCCCCCACGCCATCCGCGTGCAGACTCCGTCGCGACACATCCCGGGCGTGGTGGAGGTCACGCTCTCCTACAAGTCCAAGCAGTTCTGTAAAGGCACGCCCGGCCGATTCATCTACACAGcGCTGAACGAGCCCACCATTGACTACGGCTTCCAGCGGTTGCAGAAGGTCATCCCGCGACACCCTGGCGACCCCGAGCGCTTACCAAAGGAAGTGATTCTGAAGAGGGCGGCGGACCTTGTAGAAGCTCTGTACGGAATGCCACACAACAACCAGGAGATTATCCTGAAGCGGGCGGCCGACATCGCGGAGGCGCTCTACAACGTGCCCCGGAACCACAACCAGCTGCCCGGCCTGGGGAACACCTCCGTCCACGGGGGCATGATGGGCGTCAACTCCTTCTCCGGCCAGCTCGCCGTCAACGTGTCCGAGTCCACACAGGGAGCCAATCAGGGCTTCAGTCGGAACACGAGCAGCGTCTCACCGCACGGCTACGTTCCCAGCTCCACGCCGCAGCAGACCAACTACAGCTCCGTCACCACCAGCATGAACGGCTACGGCAACACGGGGATGTCCACCCTGGGCGGCTCGCCCAACTTCCTCAACGGCTCCGCCGCCAACTCGCCCTACGCCATCGTGCCCTCCAGTCCGACGATGGCGTCCTCCACCAGCCTGCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCGCCCGCCAACATGGTGTCCGCCGTCAAGCAGAAGAGCGCCTTCGCCCCCGTGGTCAGGCCCCAGACCTCGCCGCCGCCCACCTGCACCAGCGCCAATGGCAACGGCCTGCAAGATCAGTCTTTTGTGGACTCTAGCAAGTACTCCACTGCCGGCTCACTGCAGGGCTTAGCCTTCTCCTGAACAATTCCTGGAATGATCGTTCCACCGATGTAGGAGGTTTGTGAATGACGATGAGGACACGTTTCGCTCGTGACGGATTTGGACGGGAGGCGCGACTCTAGATGACAAATGTAACGTTTAACTCAGGCCCTTTACTAAGGacgtttaaaaagaaaaagaaaaaaaagacgaaaaacaaaaagacaatttGCAACATCtatgatttttaaatttatAAACCTTCTAGTCACCTGTGAGAAAGTCTGCCGAGGCCACAAAACGACCCTGTTCAAACCACGCCGACGCGAGGGAGTGGAATATTTATTTCCGGAAAAGGTCTGCTTCTTTTTTCGTGTATGGTTTTTTGATTttagcaaacaaacaaatgcctTTTTACAAACTGTAATATACACAAGGGACACTATAtgagtttttaatgttttggctttgttgtttttatttatggtgTTTATCaaagccgtgtgtgtgtgaagtctAAAATGGAAGGCTTAGTTGGCAGTAGAGGGgaacatttgaacattgttaCGATGGGCTTGTGATCAAATACTTGAGGAGGTCAGACAGGTGTCATGACCCTCACAGCCAATGAAACCAGGCGCACGCTACGACCTGTCAATaaagacattacatttgacttaaatggttaaataaatcatttctgGGTTAGACAGGGAGAGCGTTTTAAAAGAGACAACAACTAGAGGTGTtgatacacacagagatccTTTTTGGTAAACTCAACAGTCACACTCAATGCCAACGCCGTTAACCACCAGCCTTCTGTCGCGTTTGCTCGTCAGACAAACGAGAAGGATCTGGGCAGCGGAAGCAAAGCTCTGCTCGTCTTTCACTGTCCTTCAGTCGATGAGGATCTGCGGTGAATTCTCCGCAAACAGCAAGATATCGCTGGAGTGAAATTTAGTCGAGCGCTGGTTGTCCAATCGTGCGGGAGGCACGCGCGGCTTTGTTACCGCTGCGCCGTGGTCGCAGGCCCACTGGGAGccgaacgccagacagctcccCCGGCTCATTCTCTCGATGTGTGTATCAAGGCCCCGTAACGCAGGGATGAGATTTCGTGAACTCAACACAAGACAGATGAACTGAAGGAGTAGGGTTTGCGAGTGAGTAAATAGAGTCCTTTATTTAACGAAAAAAACTTTTGCTGCTACTCAGTGCAGGAACACCAACAGagaaacaaaacatacaatcgAACGGGTTGTCGCCATTTTGACTTTCACTATACGTACGGAAGCTTTTATATCTGTAGTTGCTCGTGAAGGAATTCTGTTACGTGATGCTGTTTTtttcgggtgtgtgtgtgtgtgtgtggggggagttatttttttttttttattgttttttttttggttagtctattttgttttttgctttcaTATCGAGACTGTGAGATTTGCCCTTTTCTTTTGAGCTACTTTTTTGCCTTTTAACAAAATCAAAGGTTGGGGGATATGAAGAAGAAACGGCGGAGCGTTGGAACAAAGTGAATTGAAAGGATATTTTCGGTGATCGTGAAGGAGCTGTCCATTAGCGTGGGGACGTTTGACTATTTAGCCAGCACTGTAATAGCCTGCTCCTCAAGTGTCAAAACCCAGCAAATATCAGTCCAATCATTTCAATTATttctgttatatattttttgtacataGTAATACATATGTTAGTTTTTGTGATTAagttcttttttcctttttttttttttgccaaagtcatcgttttaaatatatttatacattaaaatgtCTTAAGGCAGCTTTACAATATAGTGTCACCAATGTTATGTTTACCGCATACTCAAGATTTCACCAACATTAGCTTGCAAATGCACCAATGAGAAAAATGGATTTTGGAAATGCAAGGGGGGGatttctgtaaaatatccatataaataatgtatttatctcTGGATTGTGTACATTGCTTCTCTCCCCtagtttaattttattgtgtatGTTTGCAATGTGATAAAGTGCCGACCTGTTTAGTTTTGTCATCCATCGTTGTTCTTGCTGTTTAAATGtgattttgatatttttcatttgtatttcgtttttttttttttttttttgtattgtattgttttaaagccatgcttccattttttaaattaccatCCATGAAAAGCCATTgtctatttttgtattatttgtaagttaatgaaaaggtttttttgtttctttgtttgttcgtttgtcatttatctgtttgtttggattttggaattCTTTTCTAAATGTATGACAAAAAGTAGCATCTTATTCTGATAGTATTTAGTTATgtagattttaaaaatatatgaatatataaatatatatcttttttgtttCGCTCTTTGAGGCTTACAGAAACTGatactgttttaaataataatatgcatgGGTTCTTTTCCTCTGAGAGTGATGGTTGAATTTTGTGCGTTTGAAAATAGGAAGACCAtttcgggggcgggggggaaatatgaaaatactttctttcttttttttgggtttttgtttctcttctgttttgttatttcatctttatttatgCTTGCCTGTATATCCGTATCCTCTTTCTAATTTCTCACTAAAATCTGAACCAGCAGTTTAGATGCCTTAACAATGCAATCCTATGCCCATTGACTCACTTGTATATTGTAGAACCACACCGCCGTCATCTGTCGCCACAGAATACTTCaagagaacattttttttaagggggaaaaaaaagcacaaaaggaACTGTTTTGTTATCCTGAGTGATGTTTACTTGCTGTTGCTTTTCTGACGCTCGGAGCTCGGTTACCCGGCCAATCAGCACTGGAGGGGTTCTGTACTGTACTTTGAATTttcgaggagggagggaggtgggtggaaggagagagtggagaggagagacagagaagctgTGATTAATATTTAATGTGTGTTGCAGCTGGGTGGCGCTGGGTGGGCGGGGGTTGCACTATATCATTAGTCTGAGCAAAGCCTGTCCTTTCGTTTGAGTTTTGGTGTTGTTATTCGCATTATATTGACAGAGAgggagttttgtttttgttttttacaattgaaGCCATATTTCACTATTCTGTCATTGCCATTTTAAGGAAACGTCTCTAAATGTGAAGCGGCAGCAATGAAAGATAGCAGACTCTAACGACGTTTCACTCGTGAAAGTGCGTTCTGCTTCTCACAAGGTCAGAGTCGGCGGTCATCGCGACCGCACAGCCACTATTTCAGGGCTGTCCGTTCTGACCTGCTCAGAACCGAACGCTCAAAAAACCTACGTCACAATTTGTGTACGTATGCATAaactgaggtttttttttaatggtcatCCTTGCCAATGTATCTGCCTCGTAAACCGGCCACGTCCCCTTCCACATTCACCAACAATGGCACAAATGAGACACGACTAAACGGGCTAGGGTGAACGGTTGTCAGAGCGCTGTGCACTGCGGTTGCGGTCATCAGCTCTCTGAAAGGCCCCTCATCCTCCGGGCAGGGCTTTTATTAATCGTGTATGAAGGGACATTTAATCAGCTCACTGAAAATGGACCTCCGCATTAGGCACCTCTGCATTTTTTTTCTAATacaaaatattgatttattcaCTGGTTTGACTGTGGGCAGTCTCACCTGAACCGCGGTGACAAAAGCAACAAACGGAGCTAAGAGTAACAAATAGTCTGTGAAACAACAGCATAACAAAAAaagatggacaaaaaaaaatgctggtTTTCCTTGTTTCTTGTTTCCAAACCTTTTTCTTTGACTGGACACACACTGAACAGTTCTATTGATAGATAGGgaaaagtgaagaaaaaaaaaaactactgtaTAGATTGTTATCATTTTTGATGAACTTTGAGCTGTAAAATAACTTTTCAACTTTCACAATATTTAATTAAAGTTCCTTCTTGTCTGTGACCTTGTCATTTTCTTCTTTCGTTTGTTCGCGCGCCCGCACGGTGATTTAAGTGGTGTTAACAGTGGTGCCCGTCACATCCACCAGCACGGTGTCACCCACAGCGTTCTTCCATCTTGTGTGctgaaaataaac

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	COE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01833	TIG	IPT/TIG domain	Domain	Interproscan
PF16422	COE1_DBD	Transcription factor COE1 DNA-binding domain	Domain	Interproscan
PF16423	COE1_HLH	Transcription factor COE1 helix-loop-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002909	Domain	IPT domain	Interproscan
IPR003523	Family	Transcription factor COE	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR032200	Domain	Transcription factor COE, DNA-binding domain	Interproscan
IPR032201	Domain	Transcription factor COE, helix-loop-helix domain	Interproscan
IPR038006	Domain	Transcription factor COE, IPT domain	Interproscan
IPR038173	Homologous_superfamily	Transcription factor COE, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10747	TRANSCRIPTION FACTOR COE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-