Gene detail

Detailed information of KAJ8405091.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8405091.1	SPLICING FACTOR SF3A-RELATED	AAFF_1.1_unplaced_50	4869818	4880663	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00330120

ATCTGTTTCAGTTGACAGTGCAAATGGCGTAATATCTGAACATGGTCGCGTCATTATAACGATGccttaacatttattttgaatgattAAACTCGAAATAAACTTGAATGAATGTAGCAGTCTGTCTGGGTGGACTGAAAAAGCGGAACCAATTTGTGACTGCGGTGTTTCTTGGAGGGAGGTACACGGGAGGGAATACTTCCGGCGGCGCTTgtcgtgttgtgtgtgtaagagCTAGCGTGAAGCGTATGCTAGCTGCGCCGTTGTGTGTCTGTACCAAGCCTTTCGTTTTCACCATTGTTAACCGGAATTTCTATCTGAAATAGCAATGGAGACGATTCTGGAGCAACAGCGGCGCTACcatgaagagaaagaaagactaATGGAtgccaaaacaaaagaaatgcttcacaagAAAACGACGCTGCGCGACCAAATAAACTCCGATCACCGGACAAGAGCAATGTTGGATAGGTACATGGAAGTGAGTGGAAACCTGAGAGACACCTACGAGGATAAGGATTGCATGAGAAAAGACGAGCTGAACGCCATCTCGGGACCAAACGAATTTGCAGAGTTCTACAACCGGCTCAAGCAGATAAAGGAATTCCACCGGAAACACCCCAACGAGATATGTGTGCCCATGTCTGTGGAGTTTGAAGAGCTGATCAAAGCCAGAGACAACCCCAGCGAGGAGGCCCAGAGTGCAGAGAAACTGGAATACATCACCTACCTGTCTACGTTCGATCAGCTTTTCGACATTTCCAAAGACAGAAAGAATGCCGAGTACAAAAAGTATCTGGAGATGCTCTTGGAGTACCTGCAGGACTACACTGACAGAGTGAAGCCGCTCCTGGACCAGAACGAGTTGTATGGTAAAATCCTGGGCGAGTTTGAGAAGAAGTGGGAGAATGGGACGTTTCCTGGATGGCCGAAAGAGACGAGCAGTGCTTTGACCCACGCTGGAGCTCACCTTGACCTCTCTGCCTTCTCCTCCTGGGAGGAGTTGGCCTCTCTGGGGTTGGACAGGTTGAAGTCTGCCCTCATGGCTTTGGGGCTGAAGTGTGGAGGGACTCTGGAGGAGAGGGCCCAGAGGCTGTTCAGCACCAAGGGGAAGTCTCTGGAGGCCCTGGACCCATCCCTGTTTGCCAAGAACCCCAAATCCAAAGGACCAAAGAAgGACACAGAACGCAACAAAGAAATCGCTTTTTTGGAGGCTCAGATATACGAGTATGTGGAAGTCTTGGGGGAGCAGAGGCAGCTAACGCATGAGAACGTCCAGAGGAAGCAGGCTCGCACGGGCGAGGAGcgcgaggaggaagaggaggagcagctgtCCGAGAGTGAGAGCGATGATGATGACAACGAGATCATCTACAACCCCAAGAACCTGCCGCTGGGCTGGGACGGCAAGCCCATACCGTACTGGCTGTACAAACTTCACGGCTTGAACATAAACTACAACTGCGAGATCTGTGGGAACTACACGTATAGGGGGCCCAAAGCGTTTCAGCGGCACTTTGCGGAATGGCGTCACGCTCACGGCATGCGCTGTCTGGGCATTCCCAACACCGCCCACTTCGCCAACGTCACCCAGATAGAGGACGCCGTGTCCCttTGGGCGAAGCTGAAATCCCAGAAGGCATCCGAGCGGTGGCAGCCCGACACAGAGGAAGAGTATGAGGACTCCAGTGGGAATGTGGTCAACAAGAAGACCTATGAGGATCTGAAAcgccagggtctgctgtaagGATGACAGGAACAGAATCCACGACTTCACGGAAACAGCCGTTTTAATTTTAAACGTCAAATGGAATCAAGGCATTTTTTGTCCTTATTGTCCTTGGTATCCCATCTGAAACCCTTTGGTTTTACTCTACTTGTTTAAGACCCTAAATTCACACATCCCATTTGTACGATGTCTTCATTGcccattttgtttgaaataatgtGTTTTGTGATTTACCATATTCAATAAAATAGAAAGCtcccttttttttgtcttttactaaa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11931	SF3a60_Prp9_C	SF3a60/Prp9 C-terminal	Family	Interproscan
PF12108	SF3a60_bindingd	Splicing factor SF3a60 binding domain	Domain	Interproscan
PF13297	SDE2_2C	Replication stress response SDE2 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000690	Domain	Matrin/U1-C, C2H2-type zinc finger	Interproscan
IPR021966	Domain	Splicing factor SF3a60 binding domain	Interproscan
IPR024598	Domain	Splicing factor SF3a60 /Prp9 subunit, C-terminal	Interproscan
IPR025086	Domain	SDE2-like, C-terminal domain	Interproscan
IPR051421	Family	RNA Processing and DNA Damage Response Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12786	SPLICING FACTOR SF3A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-