Gene detail

Detailed information of KAJ8404992.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8404992.1	FI24210P1	AAFF_1.1_unplaced_50	1555394	1572293	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00329130

CACCAGCGTGATAAGCACCACGTATCTGATCGGTGCAGATACGTGGTCTCTTTGTGAGGTAGATCATGTTTGTATTAATGGGAATTGATAATGATCTGAAGTAACAAGTGGAACCATATAATACCGTGGCATAACGAATTATCGTCATACGTATTAAACTTCCAAGTTCTGGTTTCACTTATTTTCATACACACAGGAAGCAAACAGAGAGGCGATTTGCGCTCCGCAATCAAACTTCCTGGACACACATGACCAACGTCAATTTTAACCATATCCATTAACATGAACACGTTAGACGGAACAAAATACTAAACGATTGCCTTTCAGTAACATTTCTAAATACAACGAAagtatgaatacatttgacacGTATTTAGCGTACAAACCAAGTCAATCTACCCATCAAAATgactgctagctagctggtagctAACTTGGTTGCAAGACGCCACTTGAAAGGACAGTTAGGCATGTCGTTTCAAAATAGAATGCGTTTACAGTAAGGCTACAGTCTCAAGCTTCAAGTAACGCGACTACGTGGCTTACTAATTAAGTTCTATGGCCTAAATGAAACAATGAGAGATACAGAAGCAATACAATCGATTCCACTCCATATTTTGTTATCCGCAACCCTCTGGCACGGCCACAACTGCAACTTGCGGATGGATATGTAAAATACAACGCTATACTACGGCACAACTGAGGGTGAACCGGGCGATTGCAAGACCAAATACGAAAAGAAAGATAAAGCTACCATTAAGAACTGAAGTCATTTTTAGCGAATGACCAAACGAATCCAACCCGTAACCTTGTTGCAAACACTACTAAAAACATCGGACGGACGGACTGACGAACGCACGCCGCACAGCCGCCGCCAAGGCAGTGACATAGGTAGGGCGGAGAGCACTggaaaaatagaagaaaaaggAATCGGACACGGACAACCACAGACTCCAGCCCCAGCAGCGGTCTCCATTTTAACTCCTCGCCCGCTCTACACCTCACGTGTCCTGGACTGTCTCTCTCACATGACCCCAGTGTTTGTCCCCGTGATCAGCACTTCCATCTCCGTCCCAGTGTCACCGAATATCACATTTTAAACTCGAACCCTCATGGATATGCTAGAACAGAGTCTGGACACCGCTTCAAGTCACGAGAAACAAGAGGAGGAGGTTGTACAGATAACAGAAGGGGACAGCGCCGGGGGAGCAGAGCAGACGGCGGTTACCATAGCAGGCGTACCGCAGACAGCCACGTTCGCTGATCACAACATTCAGTACCAATTCCGCACGGAGAACAGCGGTGGACAGGTGACGTACCGTGTTGTCCAGGTAACGGACCAACAGTTAGAGGGCGGAGACGACGGGGGAGGAGCGGTCAGCGTTGTCTCGACCGCTGCCTTTGCGGGAGCGCAGCAAGCCGTGGCGCAGGCGGTGATCCAGAACCCCTTCAGTAATGGTGGCAGCCCAGCAGGGGAGTCAGTGGGAGGGGAGACACGCTTCGCCTATTTCCCCACCGCCACAGTGAGCGACGGCACAGCCACCACTgacccctctctcacacaggcaGGGGGTCAGTTCTACGTGATGATGTCCCCTCCTGACGTCCTGCAGTCTGGCACCCCCCGGACCATCGCACCTCGCACGCACCCCTACTCCACAGATGAAAACGAGATGCTGCAACATGATGGTTTAAACTGGAAGATGGACGGACCACGGACGCCGAGGgatgagaggaggagagcacAGCACAATGAAGTGGAGAGGCGGCGGAGAGACAAGATCAACAACTGGATTGTCACGCTCTCCAAAATCATCCCGGATTGCAACATGGACAGCAGCAAGACTGGGGCAAGTAAAGGCGGAATCCTGTCCAAGGCGTGTGATTACATTCGGGAGCTGAGACAGAACAACCAGAGGCTGCAGGAGAGCTTCAAGGAGGTGGAGAGAGTGCAGGTGGACAACGAGCTGCTACGACAGCAGATCGAGGAGCTGAAGAACGAGAATGCGCTGCTCAGAGCGCAGCTTCAGCAGCATGGCATTGAGAGCGTTGGAGAGACGGCGCCCCAgtaaaggagggagagaagagggaggggggggaagaggaggagaaattGCGGATGCAGACTGACTGAGGAGACACTGAGGGacagcaaaaaacaaacaaaaacaataactaCTGAAGAAGcacatctctttttttttttttcttctccctttctctctccatctttccctTCATCCTGTGGGCTGATGTGGCTGACAAGTCGTGATCGTCCACGTGTCACAGACAGGAGTTTAAAAGACACACCTTCTTCGCCAAGGGTCACATCAACACAACAGGAGATCCAGCGCACTGAAGCGGAGGCCAGAAAACAGATCCCGTTCCCTTCTATTTATTAAGCTTCACTTATGGACAGTGAGGACTCATTTCATTTTTCCGTTGTTCGAGGGTTTTCTTCCATCACTCTTATTTTCAGCATATTTTGGTTTTATGTTCCcccttttttgtctttattaGTGTAATTGTCGACGTCATTGATGGGTCATGTTagttatttgatttaatttattagCTTGCAAGGAAAACATGATGCACACAGGAAAGATGGTAGCAGCTGGATATGGGACTTCAAGCTGCGCTGTTGGTCAGCACAGTACGGCCTAAATACAAGGGTATTGGCCAGTAGGTTTGAATAAAGTGTAAAAAATTACAAACCTTACAGAACTATGCAGTGCCGCACGACTTACTGCCTTGTAAGGAGTATCAATGTAGCGATGTTTTCAGTTTCACTGCAAACCTGAACTTGCAGTGTTAACTGAGCGAATCCCTGGCATAAGTAATCAAAGCTTGGGGCTTTGTAGTGTCAGATCACACTTTACGAAGGGCACAAAGGGGGCCTTTGGTTTTGAGCTAGAGTGAGAGCTCTGCTCCAATGCACCTGTGGCATGCCTGTCCTTTGGtataacatctttaaaaaaacaactaaaaaaacataaaccataATAACTACAGCTGAGGTCCATGTGGGGACTACGAATTAGCCTCTACCTGATGAGCCAGGAGAGGGTGCTCTTGCTCCTCAATGACTAACCGCAAACAACAACTCACTTCCGTGCTGTTATCAATTACCAGCTGGCCTTGCAATAATGCATTTGATCTGAGGTGTGTAATTTGAGAAGCGGTGGTAGGTGTTTTTAGGTGCTGTGATTCTCTAGCAGAAACTAATGCGTAAGGAGGACGAGATAATTTAGTCAAAACTGTCAAAATGAGAACTTGAAAGAACGTCAAGCCTGACTTAAAATTCAGATGAATTGATATTGGTTGGCTGTTCGAATGTTTGAGAATATTACAAAGAGTAGAGGGGCCACGGAACGATGGCTTTTTAGGAAATAATagacattaaaaatgtactacTTTTACCAGGTAAGATGAGGTGAGAATAACAGGAAATAAATTGCTTTTATTTCCAGAAATGTTCACATTAGACATATTCACATACCTATATGTACGTATACATGTACGTACGGCTAGTTATGtacttttggattttgttttagcTTTTAATTTTACGTtgtgtaaatacatttgaatgaaaCTGAGGGACAGTTGTGGGGAaagtacagaaaatgaaaggatGAACTGCCAGAAGAAAGAAACTAGAAAAGAAAACATCAAAGCGGCATGTTGATGCATTTCCCCCTTTCCTTGTGGGAATGAGCAGAAGAAATGGACAGACTGATCGACCAATGGTGTCACTCCtcaccttctccctctcccagaaACACCCAATCACTCTTCTTACTGTGTAGGACAATACAGagtcaaaacaaaatgttgggACTTGTGAACAGACTTTGGTTTGTGaaaattttgtacattttctttctttttttttctgtgctggggagagggggtgaggggaaAATGGGAACGGTATAGTGTGAAGTAAAGCACTTCTCAAGAAAAATATAAACCAGACCTCAAGAGTTGCACGAACGCACAGTCCAGTGATAGGATCTCGCAAGCCTCAGACAATTCAGGATCCAGAGATTACCACACAAAACGCATCAGAATCAGAGAATCACAAAGTCTGATTGCTAGGTACCCAAATCTTGAGTTTTTGAGGACAAGAACCCTGgactgtgtccgtgtgtgtgtttgtctctgtgcaTTGGGTTGCAGAAGCTCTAGAACATAGCCAACGTTGACAGATATTTTTGACAATTAGTTTTACATTATTTCCCAAGTAGTGCAAGCATGAGATTTAAAACTTagagagaaaaaatgtaaatgctcaaGCTAAAAAGACTTGCtgttcacaaaaataaaatagttttggGGATTGTTTTCTTTTACTTTGGGAAGAGGAAGAGTAAGAACAAATTGAGCAGCAGTTCTAGGCCAGTGGAGCTGGGTGACCACAACGTCTCAGATGTAGCAGGAAGCCAATCACGTCTTTTCTAAATAATATTTGTGGGGGATGGACCACAAAGTACAAAATAAAGACTTGATAATTTCCTTGTCAGAATGAATTATGTCTTTGTCCTCTTGTCTTGTTTTCC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR018522	Conserved_site	DNA topoisomerase, type IIA, conserved site	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR051732	Family	Upstream Stimulatory Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46117	FI24210P1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003918	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006265	Biological Process	DNA topological change	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-