Gene detail

Detailed information of KAJ8403740.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8403740.1	T-BOX PROTEIN-RELATED	AAFF_1.1_unplaced_56	821913	838324	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00346080

Transcript

AAFF_T00346080

ATGTTCCCCACCTTCCAGGTCCAGATTTCGGGAATGGACCCCATGGCTGAGTACGTCCTGCTCATGGACTTCATCCCTGTGGATGACAAGAGATACAGGTACGCCTTCCACAGCTCGTCCTGGCTGGTGGCGGGACGGGCAGACGCGGCCGCTCCTGGGAGGGTGCACTTCCACCCAGACTCCCCCGCCCGAGGCGCCCAGTGGATGAAGCAGACTGTCTCCTTCGACCGGCTCAAACTCACCAACAACCTGCTGGACGACAACGGACACATCATCCTGAACTCCATGCACCGGTACCAGCCCCGCTTCCACGTGGTGTTTGTGGACCCGCGCCGCGACAGCCAGCGCTATGCCCACCACAACTTCATCACCTTCTTCTTCCCCGAGACCCGCTTCACCGCAGTCACCGCATACCAGAACCACAGGATCACCCAGCTGAAGATAGCCAGTAACCCCTTTGCGAAAGGCTTCCGGACCCCGGGGCCTGATGACTGGGCGTGTGGTGGCAGGTCTCTGCCTCTCACCGTCCCTGTGTGTCAGCCACGGGCGGGGAAACGTGAGCTCAGCAGCACCGAGGAGCAACGGCAGCAGAAGAGGCAACTTTCAATGGCCGGCCTGTTCTTGGACACGAGCTCCGGCTCCAGTTCGAACGAACAAGAGCGTCCGGGCCAGCTCTCCATCCGTGTCCCCCTGCGGCAGGGCCTCCCCTCCGACCCACCGCCTGCGGCCCGCCAGCCCCCCCCCAGGCCGCCCCGGAAACGCAGAGGAGCCCCGGGCATTAATTTCGTGGAGATGATCGACAATCTTCGTGGGAAATCTGGACAGGGCTACTACGTGGAGATGGCCGTGGGAATCCCACCGCAGAAGCTGAACATTCTGGTGGACACGGGCAGCAGCAACTTTGCAGTGGGTGCGGCCGCTCACCCTTTCCTCCGAAGATACTACCACCGCTCGCTCTCCGGCTCGTACCGGGACCTGGGCCGGAGTGTGTACGTGCCCTACACGCAGGGCCGCTGGGAGGGGGAGCTGGGCACCGACGTGGTCTCGGTCCCGCACGGGCCCAACGCCTCGCTGCGCGCCAACATCGCCGCCATCACCCAGTCCGACCGCTTTTTCATCAACGGCTCCAACTGGGAGGGCATCCTGGGCCTGGCCTACGCCGAGATCgcgcgtcctGATGAGACTCTGGAGCCATTCTTTGACTCTCTGGTGCGGCAGACCTCCGTGCCCAACCTGTTctccctgcagctctgtggggCCGGATACAGCCAGAACTACAGCCTGGCCACTGCCACTGTGGGGGGCAGCATGATCATTGGAGGGGTGGACCCCTCTCTGTATGTGGGGGACCTGTGGTACACCCCTATTCGCCGGGAGTGGTACTATGAGGTCATCATCGTGCGCATCGAGGTCAACGGACAGGATCTCAACATGGACTGCAAGGAGTATAACTATGATAAGAGCATTGTGGACAGCGGCACCACCAACCTCCGGCTCCCGCACAAAGTGTTCCAGGCCGCCGTCAAGGCCATAGAGGCAGCCTCTTCGaCGGAGCAGTTTCCCTCAGGGTTCTGGCTGGGGGAGCAGCTGGTGTGCTGGCAGGCCGGCACCACTCCCTGGCACATCTTCCCCGTCATCTCCCTGTACCTGATGAGTGAGAATCAGAACCAGTCCTTCCGCATCTCCATCCTGCCTCAGCAATACCTGCGGCCTGTGGAGGACGTGGCGTCAGCGCAGGAGGACTGCTACAAGTTTGCCGTGTCACAGtccagcactggcacagtcatgGGCGCAGTCATCATGGAGGGCTTCTACGTCGTCTTCGACCGCGCGAGGAAACGAATCGGCTTCGCCGTCAGCACCTGTCACgTGCACGACGAGTTCCGCACGGCGTCGGTGGAGGGCCCGTACCACGGCGCCGAGCTGGAGGACTGCGGCTACAACATCCCGCAGACGGACGAGTCCACGCTGATGACCATCGCCTACGTCATGGCAGGCATCTGCGCCCTCTTCATGCTGCCACTGTGCCTCATGGTCTGCCAGTGGCGCTTCACCCGCTGCCTCCGGCCACCAGGGGGCCCCGACTTTGCCGACGACATCTCCCTCATCaaatgagagggggagggggggcggggcggacAGAAGGGAGCAGGCAGGGACGCCAGATGTGGATGTTTGATATTTGTCGCGGAGCTCGCGTCGCCCCCTGGGGACCGCGTCCACGTCGCGTCACGGACGAGTTGTCGTGGTGTGTATCGCTAAACGTCGCTTTGAGTCAACGGACTTGCGGACCATCCAGCTTTCACTGGACCGAGATCTGTGAGAGAGGACCGTTTCATCAGCATGTATGGAGAGGAACcgtttctgggggggggggtaaagtgtgtatgcgtgtgcgtgcgtgtgtgtgagcgtggttATGTATGGCATGAGGCTTGCATATAACAAACAACTACAGATGAGGGCTGgacatatttattacattttatgaattCATGCGGTTGTTACATCATCGGTGCCATCCCCTGGGAAAACCACAGTGTGAAGCCGGGATGAAAGTACTAACCAGCCAAATTTCATACGTTTATTCACCTGCCGTACATACCGTACGGGTTATGCACATATAcagaacatatatttaaaatgtgaatatcaaatatatatacaatgttaATGGTATTGATATTGGGGAGGTGTAGAGGAAGAGACATATAGACATTTGGCACATGCCTAGAGGCAATgagatgatttatttaaaatgatatgaCTAATATCAGATACCTGCCTGTATGTTGAATGGAGAGACTTGAGAGGTATAGACACCTATCTGCCTGCCACATCAACTTTATTAACGAGTGtgtgccctgccccccccctcccccttttgtGAGTTATGGATATTAATAGTGTCGTGATTGTAGCGCATTACCTGTGTCAGTATACACGAGAGGAATGGCTAAAAGAGAAGAAGTCTAATTGAAGTCTGCGACTTGCTGTAAATAATTCAGACCTGAAACTGTATTGAGAGTGAACCCGACTGTACTGACAACCAATAAAATACTTAGTACCTGTAT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00026	Asp	Eukaryotic aspartyl protease	Family	Interproscan
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001461	Family	Aspartic peptidase A1 family	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR009119	Family	Beta-secretase BACE	Interproscan
IPR009120	Family	Beta-secretase BACE1	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR033121	Domain	Peptidase family A1 domain	Interproscan
IPR033874	Domain	Memapsin-like	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-