Gene detail

Detailed information of KAJ8402332.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8402332.1	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	AAFF_1.1_unplaced_64	171230	190489	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00368210

ATGGATGAGGACACGTACTCAAGTAGTCAGGAGATGCAAAAGCTTAAGAAGGAGTTAACTCCCAACTGCATCATGGGAAAATTAAGTGGTAATGCCCAAGGGGTCAATAGTCTCCGACCAGGAGATCTATTTGACGTGCAGTTGTCCAAAAAGGACAGCAGCCTGGGCATAAGTGTCACGGGCGGGGTGAACACCAGTGTTCGACATGGGGGGATTTACGTGAAGGCTATCATCCCTAAAGGAGCCGCTGAACTTGATGGCCAAATACAGAAGGGGGACCGAGTTATGGCAGTCAACGGGAAGAGCCTTGAAGGAGCCACTCACAAACAGGCAGTGGAATCCCTGCGAGACACCGGCCAGATCGTCCATCTGCTCCTGGAGAAGGGCCAGCTCCCCGCTGCGAGTGTCCACGCCCCGCTCACCCCGCAGTGCACCCCTCCCTCCGCGCCCAGCGAGCGGGACACCCAGGAGGAGCCCCTCCAAACCTTGCCAGGAGACCGCGAGTACAGCTTTGTCACTGAAGACAACGTGTTTGAGGTGGGCCTGCTGAAGAACTCGTCTGGCTTGGGCTTCAGCTTCAGCCGAGAGGAGAGCCTGCCCACAGAGGCTCCCGATGCCAGCATGGTCAGGGTCAAGAAGCTGTTTCCAGGGCAACCCGCCGCTGAGACCGGCCTGATCGAAGTGGGTGACGTCATCCTCCAGGTCAACCAGACGTCCCTGAAAGGCCTCTCACAGCATGAGGTGATCTCAGCGCTGCGAGGGACCGGACAGGAGGTCACTCTGCTTCTCTGCAGACTGGAGCACGGACTCTTACCTGACATGGACATCTCAAGTCTAaCTCCAAAGGCCTCGCCTCAGAAGGAGCCGTATGTCCAGCCTGACTCCAGCCAGGTCCGGGCCGCTGGACTGCAGCGAGACGGCTCACCTGCAGAGGGCGGCAGACTGGACACTTTGGGGCCAGTGGAGGAAGCCCTGGAGCGGCTGCTGCTCAAGTCCCCCAGCCGCCGGGACAGCTACAGCGACAGCACCGACAACGAGGAGGTGGAGAAGGCCTTCAGCCCCTCGCTGGAGCACAACAGCCAAGCCTGGGACCCCAGTATCTACCAGACGCCCAGCAACACCCTGGCTTTGGGGCTCAGCCAGTACGAGACCCCCAGGGAGCTGGACGACACAGTGCGATCCGCGTACTACTCCGCCAGCCCGTCTCCCTTCATGCCCGTGCTGACCCCAAGGTGCCCCTCTGATCCGGAGCTCACCGCGCAGGCTGGGGCCTCCTCTCCGACACCCCCGGACCGCAGCCGCCTCAGCCCCAGCCCTGAGCCCCTGCCGCCCCCACTGCCAGTGCCCTCCACTCTCTCCTTCCCCGACAACGGACAGGATCTGGACGAGTTTGTGCCTGAAGTGGAACTGAATGTGTCACTAGTCAAGTCAGAGAAGGGAAGCCTGGGATTTACGCTGACCAAAGGAAATGACCTCAGCTGCTACATCCATGACATCATCCAGGATCCCGCCAAGGGAGACGGAAGACTGCGGCCGGGGGACCGGCTGATAACGGTGAACGATGCAGACGTGTCCAGCATGAGTCACACTGAGGTGGTGAACCTTGTGCGTGCCGCCCCCAGCGTGGTGGACTTGGTGGTGGGCCGGGTGCTGGAGGTCCCCAAGCCTGCCATAGAAGCCCACCTGCTGCCAGACATCCCCTTTCAGTGCCAAGAGGAAACGCTGGGGCTGGTGTTGGAAGGGGGCAGCGACAGCCTGGTGGGGGTGCTCTACGTGAAGGACGTCGCCCCGGGGTCGGTGGCCGCGGCGGAGGGCAGCCTGAGGCAGCTGGACCTGGTGCACTTCATCAACGGGGCGCCCACGCAGATGCTGACGCTCAGCGAGAGCCGCCGGCTGCTGGAGCTCTCTCAGAGCGACCTCGTGCTCAAGGTCACCAGGGATGGGAAGCCTGTTACTCCAGCAGAGAGAAACATGTCATTgcttaacaacaacaacaacagcccaAAAGTGAACGCGCCTGCCAGTATAAATGGTTATCTCCATGGAGGCGAATACAATACAACGGAGGCCATCTCTGGCATATGTCCCTCCGAGGAGCAGATCATTTACCTGCAGCTGGAAAAGCCCATCTCTGGGGGCCTGGGCTTCTCCGTtatagggggagagaggggcattTTTGTCAAATTGCTGAAGGTTAACGAGGAGTTGATGACTGGAGTGTCGCACACAAAAGCAGTCACCACCATCCGCAAGGCCAGGGGCCTGGTTCACCTTGCAGTGTCCCGACCGCCGGGTCAGACTCCCCACACCTACCTCGACTATCTCCCCACCAACGCTGACAAGTGCAATGGCAACACTGATGCCAGTGAGGACAGTGGGGTAAAGTCTAAACTGTGCAGTCCGACAGACGGGGAGAAATCCAGCAGAGAGCAGACTCCGCCCCCTTTACCCCCGATAGATTACCACCCAGGAGagctggggagagagaaaaagggcgAGAACGCAGAGCTCTCTGAGGACACGGACTGTGACGGCTCCTCTCTGCCCGAGGACTCCCCAGAGTACATGAATTCGGTGAATGTGGAATTGCAGACCTCCCGAAAGACTGTGTGGAAAGAGGAATGTGTCGACGGACCACCATCAGAGAGCTTCCCTCAGACCTCCGTGGGCCCCCTAGAGGAGGACGAGATCACGTGGGGCAGCGATGAGCTGCCCATCGAGAACATCAACTCCAGATTCACAGAGGATGGCCTCGTCATTACGGAGGATGAACTCACTTCTCTTCCCCTGGTGAAAGTGGTCCCTGATGGTCAGTACACGGGATCCAGACTCAACACTGTCGTCCGCATGCTCCGTGGACTCCTGGAACAAAAGATCCCGCTACAGGAATTTGAGAATCTACAGAATTTGCAGCCATTGGATGATTGCTTGATTGGGCAAACCAAggagaacaagaagaagaacaGATACAAGAACATCGTCCCCTTTGACACCACCCGAGTAATTCTAGGCAAAGACGGAGGCTACATCAACGCCAACTTCATCAAAATGCCAGTGAAAGATGAGGACTTCATGTACATCGCCTGCCAAGGACCCTTGCCCACCACCCTCGCTGACTTTTGGCAAATGGTATGGGAGCAAAAGTCTAATGTGATCGCCATGATGACCCAGGAAGTTGAAGGTGGAAAGGTCAAATGCCAGCGTTACTGGCCTGACACGCCCAAGACCGGTGAAATGGTGGACGAGAGGCTGCAAGTCACACTCATCAAGGACCAGCACCTGGACAACTTTGTCATCCGCCTCATTGAAGTCAAAGATGTCCAGACAAATGAGTTTCAGCATGTCACTCACCTGAACTACACCGGTTGGCCAGACCATGGGACACCCACTCAACCAGAACAGCTGCTGACATTCATCTCCTATATGAGGCATATCCACCGGTCAGGGCCCATAATTACCCACTGCAGTGCAGGGATTGGCCGTTCAGGAACTCTTATTTGCATTGATGTGGTTCTGGGCCTTATCAGCAAAGATGCCGATTTTGATATTTCAGACGTCGTGCGTACCATGCGGCTGCAGAGGCATGGAATGGTGCAAACGGAGGAGCAGTACATTTTCTGCTATCAAGTGATTTTGTACGTGCTGCGATGTCTTCAAGCGGACGAGAAAATCTCAGGATAG

Transcript

AAFF_T00368210

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF16599	PTN13_u3	Unstructured linker region on PTN13 protein between PDZ	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR052074	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0035335	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan
GO:0036312	Molecular Function	phosphatidylinositol 3-kinase regulatory subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-