Gene detail

Detailed information of KAJ8401656.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8401656.1	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	AAFF_1.1_unplaced_68	273102	281621	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00376270

ATGGCGGCAGTACGCAGCCTACGTGTTTCTGTGAAGCCAGAGAGCGGGTCCGAATATGAGTCCGACTCGGATTCCGAGCGAGATCCACGCGAACCAGAGCCCATGGAGGTGGAAGAGGGGGAACTCCAGTTGGAGGACATTCCGATCCGCCGATCCCTAAAAGAACTGTTACCGGATACCAGTCGACGCTATGAAAACAAAGCCGGGACTTTCATCACAGGGATCGACGTGACTTCCAAGGAGGCCgtggagaagaaggagaagagagCCAGACGCTTCCATTTCCGCGCCGAGGGCAACCAGTCCCAGAGGAACGTGGTGATGGACAGAGAGACCCTGAGGAAAGCGATCCCGAAACTCCGTCTGGAGGCATTGTATCTCTGCGGGGTGGACGATATGAGCACGCAGGATATTTTTGGCTTTTTCAAGGAGTACCCCCCCGCTCACATCGAGTGGATAGATGACACCTCCTGCAATGTGGTCTGGCTTGATGATGTCACTTCCACCCGAGCTCTCATCAACATCAGTCGCATGGCCGACCCGGAAGTCAACGCCACAGAGACAGACCGTGCCAAAGAGACCGACCCACCCGCTCAGCAGCCCAGAGCCAGGGGGGATCATGGctccgaggaggaggaggaggacaataatgatgatgatggtgatgatgatgatgatgatgaggaggagggggagggggcgggagACGAGGCGGTGAAGAAGCCAGCGCCGCAGAGCGTGGAGCCTGAGTCCCTGTCCGAGGCAGAGAGGGAATCACTCTTTCGCAATGACCTTCGACCCACGACCAAGGAGTTCAAGGGCAGGAACCTCTTGCTGAGGTTTGCCACGATGGATGACAAGAAGGAGCTAGGAGCAGCCAGACGGAGTCGGTACTACATGAAGTACGGGAACCCGAACTACGGGGGCATGAAAGGCATACTGAGCAACTCCTGGAAGCGCAGGTACCACACACGGAGGATCCAGCGGGATGTCCTGAAGACCAAGAAGCCGCTGATCGGGGACAGCATGGGCCACACGCCGCCGTACACGCACAGGCACTCCGACCTGGTGAACCTCCCGGAAGAGCCGatcgaggaggaggaagaggaggaggaggaagagggagaggacatGGACGCTGAGGACAGAGTGGTGGAGTACCGGGAGGAGCGCGAGCGAGGCGACCGGGACAGAGagaggtacagagagagagagcgagagcgaggcCTGCGCAGCAGCGGCGGCGCGGCCAGCCTGCGCCGGCAAGGGTCCACGTCAGCCTCCTCGGACTCCGACGAGATGGACTACGACCTGGAGCTCAAGATGATCTCCACGCCCTCACCCAAGAAGAGCATGAAGATGACCATGTACGCGGACGAGGTGGAGTCCAACCTCAAGACCTTGCGGAACTCGGTGCGCGGGGACGGGGGGGGCGGGTCGAGCAGCAGCGTGAGGACCCGGATCGGGGGCGGAGCcggcggtggcggcggcggtggcggcGGGGGCGGGACCAAAGCCGCGGGGGAGAAGGTGACGGACGTGCGGCAGCTGCTGGAGGAGAAGCGCCAGGGGCTGGCGCAGCAGCAGCGGCGCCAGCAGCAACCCTACGTCGCCCCGGCAACTAAGACGGACGTGCGGAAAAGGTTGGGGAAGAGGCCCTACTCCCCCGAGGGCCGCCGCTCTACCTCGCCGGTCGCCGCCCGAGGGCCCCGGCCGGGAGCCCCTGACGGACACAAGAAGACAGGTGGGCTGTGGAGCCGGCTGGGCTCCACTCCGATGGACAAGGCCCCGGAGAGGAAGGCCGAAAGCGGGGAGGCGGCTGGGGCGGCGAGCTCGGGGCCcggggcggaggaggaggactcTGAGCTGCAGAAGGTGTGGGGGGCCATGATTAAGGAGAAGGAGCAGCAGTCGCACAAGATGAAGAAGAGCCGTCTGGACAACCTGCCCTCGCTGCAGATCGAGATCAGCCGGGACAGCAGCAACGGCTCGGAGAGCGACTCCTGA

Transcript

AAFF_T00376270

CCACGTTAAACACCTTGGTCTAAAAATATTTGCGGAAAAACATGTTAGTTATTCTAAACGCACTTATTTAACCAAACAAATATATGGTAGAAGCTGTAAGCATCAATATAAGTGGTGTCTGGCAACCAGCTAACAAAACGCACACTCAAAAGATGATTCATTACGATGTATTTGCTCTTTACAGCACATGGCCAGTGATCGGCAGTGTTGCTCGTAAAGCGGACATCCTGTCACTGCCGCCGTTAGCGTGCTAGCTGCTGTAGCTACGCTAGGTTACTCCTGGACTTGGCGAGCCGGATGAGTGAGAGAAGCTGGCTATGGCGGCAGTACGCAGCCTACGTGTTTCTGTGAAGCCAGAGAGCGGGTCCGAATATGAGTCCGACTCGGATTCCGAGCGAGATCCACGCGAACCAGAGCCCATGGAGGTGGAAGAGGGGGAACTCCAGTTGGAGGACATTCCGATCCGCCGATCCCTAAAAGAACTGTTACCGGATACCAGTCGACGCTATGAAAACAAAGCCGGGACTTTCATCACAGGGATCGACGTGACTTCCAAGGAGGCCgtggagaagaaggagaagagagCCAGACGCTTCCATTTCCGCGCCGAGGGCAACCAGTCCCAGAGGAACGTGGTGATGGACAGAGAGACCCTGAGGAAAGCGATCCCGAAACTCCGTCTGGAGGCATTGTATCTCTGCGGGGTGGACGATATGAGCACGCAGGATATTTTTGGCTTTTTCAAGGAGTACCCCCCCGCTCACATCGAGTGGATAGATGACACCTCCTGCAATGTGGTCTGGCTTGATGATGTCACTTCCACCCGAGCTCTCATCAACATCAGTCGCATGGCCGACCCGGAAGTCAACGCCACAGAGACAGACCGTGCCAAAGAGACCGACCCACCCGCTCAGCAGCCCAGAGCCAGGGGGGATCATGGctccgaggaggaggaggaggacaataatgatgatgatggtgatgatgatgatgatgatgaggaggagggggagggggcgggagACGAGGCGGTGAAGAAGCCAGCGCCGCAGAGCGTGGAGCCTGAGTCCCTGTCCGAGGCAGAGAGGGAATCACTCTTTCGCAATGACCTTCGACCCACGACCAAGGAGTTCAAGGGCAGGAACCTCTTGCTGAGGTTTGCCACGATGGATGACAAGAAGGAGCTAGGAGCAGCCAGACGGAGTCGGTACTACATGAAGTACGGGAACCCGAACTACGGGGGCATGAAAGGCATACTGAGCAACTCCTGGAAGCGCAGGTACCACACACGGAGGATCCAGCGGGATGTCCTGAAGACCAAGAAGCCGCTGATCGGGGACAGCATGGGCCACACGCCGCCGTACACGCACAGGCACTCCGACCTGGTGAACCTCCCGGAAGAGCCGatcgaggaggaggaagaggaggaggaggaagagggagaggacatGGACGCTGAGGACAGAGTGGTGGAGTACCGGGAGGAGCGCGAGCGAGGCGACCGGGACAGAGagaggtacagagagagagagcgagagcgaggcCTGCGCAGCAGCGGCGGCGCGGCCAGCCTGCGCCGGCAAGGGTCCACGTCAGCCTCCTCGGACTCCGACGAGATGGACTACGACCTGGAGCTCAAGATGATCTCCACGCCCTCACCCAAGAAGAGCATGAAGATGACCATGTACGCGGACGAGGTGGAGTCCAACCTCAAGACCTTGCGGAACTCGGTGCGCGGGGACGGGGGGGGCGGGTCGAGCAGCAGCGTGAGGACCCGGATCGGGGGCGGAGCcggcggtggcggcggcggtggcggcGGGGGCGGGACCAAAGCCGCGGGGGAGAAGGTGACGGACGTGCGGCAGCTGCTGGAGGAGAAGCGCCAGGGGCTGGCGCAGCAGCAGCGGCGCCAGCAGCAACCCTACGTCGCCCCGGCAACTAAGACGGACGTGCGGAAAAGGTTGGGGAAGAGGCCCTACTCCCCCGAGGGCCGCCGCTCTACCTCGCCGGTCGCCGCCCGAGGGCCCCGGCCGGGAGCCCCTGACGGACACAAGAAGACAGGTGGGCTGTGGAGCCGGCTGGGCTCCACTCCGATGGACAAGGCCCCGGAGAGGAAGGCCGAAAGCGGGGAGGCGGCTGGGGCGGCGAGCTCGGGGCCcggggcggaggaggaggactcTGAGCTGCAGAAGGTGTGGGGGGCCATGATTAAGGAGAAGGAGCAGCAGTCGCACAAGATGAAGAAGAGCCGTCTGGACAACCTGCCCTCGCTGCAGATCGAGATCAGCCGGGACAGCAGCAACGGCTCGGAGAGCGACTCCTGAGAGACCGGggcgaggaggaggg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10309	NCBP3	Nuclear cap-binding protein subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019416	Family	Nuclear cap-binding protein subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16291	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000340	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-