Gene detail

Detailed information of KAJ8399846.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8399846.1	E3 UBIQUITIN-PROTEIN LIGASE CHIP	AAFF_1.1_unplaced_80	1150518	1166649	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00405760

ATGAATGTTCCAGAGGCAGAAGTTGCCAGGGCAGTCAGAAGGACGGGGGTTGCCTCGCAAGGTCACCCGCAAGAAAGAGCTGCGCTAGCCGGGACGGCTGTCCGTTTCTGGCCGCTCTGTAGGGAGAGGAAAGAACTCCCAACTGACGCGGCTCGAGGGAGCGGCGGGTGTCCAGTCGGAGACACGGGGAGCAGGATAGGGAAGCAAGGGGGTGAGGGCTCCGCGGGGTTGGCGGAGAAGATGGCGGGCAGCCCCGAAAAGAGCGCCTCGGCGCAGGAGTTGAAGGAGCAGGGCAACCGTCTCTTCCTCAGCCGCAAGTACCAGGAGGCTGCCGCCTGTTACAGCAAAGCCATCAACCGGAACCCCTCGGTAGCAGTGTACTACACTAATCGGGCACTGTGCTATGTGAAGCTGCAGCAGCACGACAAGGCCTTGGCTGACTGCAAGCATGCACTGGAGCTGGACAGCCAGTCTGTGAAGGCACACTTCTTTCTGGGGCAGTGTCACCTGGAGATGGAGAACTACGACGAGGCCATTGGCAACCTGCAGAGAGCCTATAACTTGGCAAAGGAGCAGCGTTTGAATTTCGGTGATGACATCCCTAGCGCCCTCAGGATAGCCAAGAAGAAGCGCTGGAACAGCATTGAGGAGAAACGCATTAACCAGGAGAATGAGCTACATGCCTATTTAACCAAACTAATCCTGGCAGAGAAGGAGAGGGAGCTGGAAGATTGCCTGGAGAAGCAAGAGGACAGTTTGGAGGACAACAGAAGTAGGAATGAAATGGCCAAGATCCAATCAAAACATGACAAGCACCTGTCGGACATGGAAGAGCTGTTCTCTCAGGTGGATGAGAAAAGAAAGAAGCGTGAGATTCCAGACTACTTGTGTGGCAAGATCAGCTTCGAGCTGATGAGAGAGCCCTGCATCACCCCCAGCGGGATCACATACGACCGCAAAGACATCGAGGAGCACCTACAGCGAGTTGGACATTTTGACCCTGTTACCCGGAGCCCTTTGACCCAAGACCAGCTGATCCCAAACCTGGCCATGAAGGAGGTGATAGACGCCTTTATCCTGGAGAACGGCTGGGTGGAGGACTACTGATCCACCGCAAGGGTCCGAGAAGGGGAATGAAATGCATAAAAAGCATGGAAAGATGAAccagagacaaaaacaaaccagtATATCCTCCTGGATTTGCACTTTAAACACAGGGCCCCACACAGCGGACTGCCAAACAGGAATGCGGAGACCTGATTGTGATCTTGAATTACACCGTACCGTTCCCTCCGTTCCTTTTGGCCGGTTGGTTTCTGCTTCCCCTAGCCTGCCCCCTAGAACAGAACACCCAAAACTGTGGCCCAGTCCCGACCACTGTTCCTTCACGGTTCCTCCTGTTAAAGTACAAACAGTTCTGTGCACTGGCCCTTTTACCATCTCCCaatcattttttttgtatagtttCCAATATTATTTTCTAATTGGTTTGAatcattggtttaattatttacCAATCATTTCTTCGCTGAGTGGTGCTCTCCGAGTTTTAGCAAGTGATCGCATTTACATTAAAAACCAAATGCAATTCCAAATTATTTTACAATCAAATATTAAGTGTTATgctggatttaaaaataaataaataaaaaagtaagcTTTTAAACAGATTCTAGAAATATACAAATGTCAGTGAATTATGGGGAAATATTTGGTTAGTGCTTTACCCACTGGGTTGACATGAGGCTTGGCTAATGCATGTCAGGTGGTACATGCCAATGGCCTGTATTAAGGTTCTCCTCATGTGGCTGCTGAAGGCCACTACATGGGAGTGACCTCCTCATTTGTGTGACTTACTTTGTCTTCTATTGGACAGATGTTTTTGCCATGGGTCAAGGCTCTTAATTTCACCAAACTGAGTTGCCTTTTTTGAGAGCACATGGTGTGAAAATGCTTTTTCGTTGCTTTATTTCAAACAAGTTTTGCGTTTCTTAAATGTCAACAAAGAAACGAGCGTTGAAGAATGTTTTTCTGCTGTTTATAATGGAAGATTTATTGTGCCTGGCCCGCAAGTTTCACTAGGTCACTAGGTGTGTGGGAAATGAGTGGAATGTTCCAATAATAAGCATGTTGTGCATTTTGATTCACGCTGCAAGAACCAACAGAAAGGCATGATGAAGTGGCCTCTTCACAGCTTGTGGTGTTGCAGAGTTCAGAGTTCTTTGAGTTACAGTTTCAGTAACATTTGAACTGCCTGCCCAAGTGGCTGTTAAATAATCAGCAGTCCTTCACTTCATATTTTCGGCTTAACAATTCATACTTTCACAATGAACtgaaaatcattttagtttgGAGCGGAAACCAATCGTTTTGATCCTAGTTTTCATACGTATATGTTTACATACGGCTTTCCCTCTATAATGCTAGACCACAAAATATTGATATTAGCTCTGGGCAAAAAGGGATTTGATTGACAGTGGCATTATGTCAGTGGCATTCATCAATATTTACAGTTCACCTACCCCCTGCCAGTGCTATGCATTGAAATACAAGATCGTTGCTGTATAAGACCAGTAGATATGGACTGACCGTTGTAAGGAGAGAAGCAAGGTAGTTGCATTAATCTGGGAAAACAGTGATCGAAGGTATTGAGTGTTGACTGTGAATCCCGTCTGTCCATCTGTTACAGTTgcagtattaaaataaaaagttacagTGAACCTttgatttttttgatttttttttctgcttaaACACATTTCTGAGGCCTTTCTCCTTATTCTTTTCTGATGCATCATTTGAAAGAACTGCAATCATAGGGTAGAAGACTTTCAATCAGAAAtgtccttttttatatatagacTGGAAAACCTACTTCAAATCTTACGTCATCCTCCATGAGTCTAATAGCTATTTACTGTTGGGAGTAACTTGGGTTAGGTTATTATGTAAGGgtgcaaatgtatttaatatttcaGAAAGGCTATTtgacaaaatgtaaattatagtCCCATTTTGGCTCAAAATTCTACTCATTTGCCACCATACCAAAACTACAGACGGTTTAGATGTGCAACTCCATGTGAAGAGCAAGGGCCTAGCTTTTAAATCTGTATGGTTTTGATTGTGTGAGGTGCACAAGAACTGTATAATTTGTCCTTTGTGGATGGGTGAGTTAGACCCCAGAACTCTGTCTTCCCTCAGATTGTATTGTCTCATGGTGGGTGTTGGCACAGTTTATTCTCATTTAATAGGAGAAAGGCTGTTTCTAGTGTCGGATCCTAGGAAGCTTCAGAACATATGCATCAGTTTTAACTAATCAAGGGCTCACAGTCCATTTCCAGAGTTGAGTGGGAGCCCTTACAGATTTTGGTGAATTGCTGGTATGCTTGTTTAGTCACTCTGATTAGACTATAGCTTTGAAACAGGAAAGTTGTGATTCAACAAAACTCGCTAGCTAGATGAAAGCAAAGCCATTGCAAACAAGAGTTGGCTGCTATGAGGTATAGTTTTGTGAGCCTAGACATGCTGATATTCCACAGTAAATGATGCTCCTGTCGCTTTTGCCAAAGTCTTTCACTATGCATTTTCGCTAACTTAACACAGACTTCAGAGCtacttagctagcttgcttgttaTTAAAATCACAGTAAGCTATTTTAGCATTGATTAATGCCTGCTTAGCTACTTGGTGAGCTAGCTGTCAATCTACCTGGAAAGATAGTATTCAGTATCAAGGTAAGCAACTTTAGTTGGATAGCTAGTTGTATTCACCAGCTTACCACATTCACTAGGCAGCTAGCCAAGTTTGTCTCATCTAAAAGCTTCAGCCAAACTGGCTAGCCAGCTACATTAGATTAGAAAATGCTACTTTATGTTGGTTGAAACTGCCTAACCTCATGCAGTTATGCATTTCTCAAATGCATAACCTTTGAGAAATGGCATTTTACATTGGCACCTTAGTGTCTTTGTTGAGTGTTCCCCCAGTGGTGGGAAGTTTATTTGAGACAGATTTGTCTGAAGTGAAACTCCTCCTTTCCCAaagcttctcatttctttccCTCATTTAAAATATGTGCTTTATCTCAGGGCTTCCCAAAGTTAGTCCTGGGGtctccctgtgtatgctggtttcaaTTCCAACTGTAATTGCAATTCCCTATATGCAATGAGGTCATAATTGATCTGAAATATGCacttacaataataataattttcccCGTTGAAGCCACATTATGTCTGAAATGGATATACGTGCTGCCAAGAATTAATATCCCATATTCGTTGAAGGACTTGCTATCAATAAGATCAGCTCTCTGACAACTCATCAGCATTCCGTTTCTGTATTATGCCCTGTGGTAAATATTGCCTTCAGAGCAAAGTTCTGTTTGcttgattcattcattttgagtTACTGATGAAATCACACTGGGGTCCGAAGTGCTGAGAGTGTGGACCTATGGTTATGCCCTTAACCGCTTCCTGTGAAAGCTAACTAAAATGAACCAAACTTCTGTTAAAAATCCATTAAAGGACAAAAATCACAGTAGcacttaaaatgcatttgacattttaagcatttagcagatgctcttatccagagcgacttaaaagatgtgacaaaatgaatgttttcaATAACCTAATACTCTCCAGTAGACTGGCTTGCAATAAACACCAGCATACAGGGCCAAGATTGGGAAGCCTTGCTTTATTAATGCTGTCTCCTAGCTGTTTGGCCATTGCACATATTTTTCTATGTTTGTACCTCAATGTGTGGCTGTTCTGTTCATTTAGAAGGTAGGTGTCTCACAAGGATGAGCGTCTGCTGAAAAGTGTTTTAAACTAGTCCGTGGAAACAAAACCCCTGCCTTAAATCAGTTATTTGTCGTTGTTTTGCTCTCTACAGCCCATCCCCCATAAAACACTATTCCATTTCAGATTGACGCTTGGCTTAATTACTCCGCACAGGCACTCACGTTTTGCATTGTACAAGTTTGGAATCCAGACGACAGGATTATGAGAATTGAAATGAGATGTTCTGTGCAAGATTCCTATAATTTGTCGCAGTACTTATTTAAGTTGATTGGCCAGTCACCCACCTGACCCTCTCCAATCTTGGGTTTTCCAGAGACTTGAGTCAAATTTAATGCAAAGTTATGTTAATGGGATTCTTCCCAATAATCCATAATTGGATTATTAAAAAGtaagtgaagaagaaaaaaacaaagcgAGAGAATGAGAGCATGAAACAACTGATTACAACAGTGTTTATGTAACATTgctatttaaaatgcaatttaaCCAATAACTGCAACTGTTTCTTTGAGGAGTTATTGTATACTTTAGGttaatttgtaaatatattttattgtgaatttcagtttttattccTAGATTATTGTGATGATTGGGTTTGGGAATATTTTAAAAGACGTTTGTTCCATAGTTATGTAATAAATGTAGGTCTGTGTACACAATTGCCCCATAATTTCCTGTATAGTTTTTGAGTCCTCATTGTTTAAAATAACCATCTGACGTCTAGGCAGTTTTGGAAGTTCTATTCTGAAAAGGGTCATAATTGAACCTGTAGCAGTATTGTGGCTATAGAAGAAcagctatatattttttattatgtacaTTTGAATCCTTTCCGGTAATGTATATTACAGCCCTGTATACACTGTTTAAAACGCATATTTCCCCcctttaatacaaataaatgttggaTCAGGTGCCATTCACTTCCATCAATCCTGTCATAGATGTGGAAAAAATTAGTGTAGggctttgttttcatcattgaTAAATGATTacttctttttcattttgtctgtgtttgtgagttaTTATCCTGAGACTTGGCCTTATACAagtcaaaatattttaaaatcatattAGGATTTTCAGCATCCTTTGTCTTCAACCTAAGAATGGTCAAATGTCAGTGGTCTCACTAGAGAAAGTATGTGATAAATTTGGGTGCTTTTGTGATTGATCATGTATGGTGTTTGTATCCTTGCTGTAAAGCCAGCATACCTGTGGGCGTTGGTGTATTTCCCTGCATTTCCAGGCTGTCCTGATTCAGAGGTCGATTTGGGTTAATGGTGAATGTTCTGCAATCTAATGCTGAAAACAGAGAGCTGTGTCACCCTATTGACACCAAGTTGatatttaataatacattcagAATGGCTAGCTAATAAAGACAATCTTTGACAAtgatttttttcatctttttttcattgttgGC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564	U-box	U-box domain	Domain	Interproscan
PF12895	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan
PF18391	CHIP_TPR_N	CHIP N-terminal tetratricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003613	Domain	U-box domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR041312	Domain	CHIP, N-terminal tetratricopeptide repeat domain	Interproscan
IPR045202	Domain	CHIP , U-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46803	E3 UBIQUITIN-PROTEIN LIGASE CHIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006515	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0030018	Cellular Component	Z disc	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0045862	Biological Process	positive regulation of proteolysis	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071218	Biological Process	cellular response to misfolded protein	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-