Gene detail

Detailed information of KAJ8399529.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8399529.1	RHO FAMILY GTPASE	AAFF_1.1_unplaced_82	409054	479712	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00409400

cactcccggccagagccgactctggtgcgacggggaatcgaaccctggacactgtggccagtgttgaacgttgtaaccactggaccacgcgggaaaCCCCAATATATTGTTATTCTAAAAGAAAATCTTTGTGCTAAGGTAATGTCTGTGATAAAGTGGAATATTGTACGATAGTGAAATACAATTGGGCCACATGACACAGAAATCAGTCTATtttatatatgctatttattaCACTTTACAATTAAGTTTTTTACCTCGTCACCTCTTCTCAATGCAAAGTGGGCAGTCATAGCATATCAAGATGCACATTGTCTGTTGGAAAATGCTAAATtgacttcagaccagcattCATGGGCAACTTCCCCCTACACCCTCCTCTGATCCCCAGCTAATGCTCTCTAAAAAGGTTAAAGTAGTCCTGTACCTATAAGAGTTGGATGCAGTAAGACTGTAAACCCTTCAGTTTTGCATCGTCAACATAAAAACTAGAATCTCAGAGTTTGAAATGTAGaccttaatttaatttaatatcacATCCATAACTTTTAATAACAAAATTTAGCAGGTTTTCAATTTTTTGTTGCTAAAAGCACAATTTCCATTCATTTATGTGACAGGAGCACTTTCTTAAATCAATGCAGTCAAAGATTAAAACAGGCAGCAAAGCTGAAGAACCTGAATCATGAGTCTGAGGCAATCAGTGTGTTGTGTTTCAGTAAATTTCCTGACATTTGAGAATGTGGACCCCTGGCTGTGATTCCAGTTTTTCCAGCTGTCATGCACAGGGAGCCTTAGACCTGTTTGTAAGCGGATGAGTGAGTGTTTGCATTTTTTCAGGATGGCACCGGGATCCCGCTCCAGTTCTGGGGCGTGTTTGATGGGCATGCAGGCTCGGGCTGTGCCATCATGGCCTCCAAGCTCCTGCACCGCCTCATCCGCGAACGGCTCTGCGACATCGCCCACCTTCTGGAGAACCCTGATATGACGCCCCCTATCTGCCTCACCAAGAACGGCAGCCCCTACCAGCTGGAGGTCAAAAGGGGGGCATCCGTGGAGGAGGACCCCAATTCGCCCGGGGATCCCACAGCACGTTTCCACATGGAGAAAGTGGTCAGTCTGGAGAGCCTGGTGATGGGTACCATTGAGAACGCATTCAAACAGATGGATGATCTCATAGAGAAGGAGAAGGTCTCCTATAGCATCTCAGGGGGGTGCTGTGCCCTGGCCGCAGTGCATTTAATGGGGAAACTCTACATGGCCAATGCAGGAGACAGCAGGGCCATCATCATCCGTAATGATGAGGTCGTCCCAATGTCCAATGAGTTCACgcctgagacagagagacgaCGACTGCAGTATCTTGGTTTCCTTAGGCCAGAGCTGCTGGGAAATGAGTTCACACACATTGAGTTCCCCCGCAGGATCCAACACAAGGAGCTGGGAAAGAAGATGCTCTTCAGGGACCACACCATGGATGGCTGGGCTTACAAAACAATTGTAGAAGATGACCTCAAGTTCCCCTTGATATATGGAGAAGGCAAAAAAGCTCGGGTGATGGCCACAATTGGAGTAACGCGTGGCCTGGGGGACCATGACCTGAAGGTGTACAACTCCAACATCCACATCAAGCCCTTCCTCTCTTGCTGCCCAGAGGTGAAAGTGTACAACATGGAAGATTACAAGCATGGCCCTGATGATGTAATAGTCATGGGCACAGATGGATTATGGGACGTCACCACTGATAGGGAGGTCGCTGATGCGGTGACAGGCTTCCTGTCAGGCTGTGAGCCCAACGACCCCATGAGGTACACCCTGGCTGCCCAGGACCTGCTAATGAGGTCACGGGGAGTCCTGAAGGAGCGTGGGTGGCGCCTGCCGAATGATCGGCTGGGTTCAGGGGATGACATCACTGTATTTGTGATCCCCCTGGCAGGACCGAAGCAATACGCGATTGTAACACACTGCAGTAAGGGTGACACGAGCGAGCACCGGGAGGGAAAGAGTCAGGTTAAAAGCACAACAGCGGTCAACGTGATGGCAGCTATCCGGAAGAAGCTGGTGATTGTTGGGGATGGAGCGTGTGGAAAGACATGCCTGCTCATTGTCTTCAGTAAAGACCAGTTCCCCGAGGTCTACGTACCTACGGTGTTCGAGAACTACATTGCTGACATTGAAGTTGATTGCAAACAGGTGGAGTTGGCGCTGTGGGATACTGCAGGTCAGGAGGACTACGATCGTCTGCGGCCACTGTCCTACCCGGACACGGACGTCATCCTCATGTGCTTCTCCATCGACAGCCCTGACAGTCTAGAGAACATTCCGGAGAAGTGGACTCCTGAGGTGAAGCACTTCTGCCCCAACGTCCCCATCATTCTGGTGGGAAACAAGAAAGACCTGCGGAATGATGAACACACACGGAGGGAGCTAGCCAAGATGAAGCAGGACCCTGTGAAGCCAGAGGAGGGCCGGGACATGGCCAACAGGATCAGCGCCTTTGGCTACCTGGAGTGCTCTGCCAAGACCAAGGATGGTGTACGGGAGGTATTCGAGATGGCCACCAGGGCGGCGCTGCAGGTCCGCAAACGCAAGAAGAGGGGCGGCTGTCTGCTCTTGTGAGAGGGGCGTGGAGGCAACGCTAGATGACAActgacgactacaacaaaaaagagGAGTTATTCTCACAAAACGCCATCTTCGTACTGTATCTTACATTTCACGCAAACAATAAGCGAggaatctgaaaaataaaaacaagaaaacaccaacacatTGATCAATGAAAGACTGGGCTGCAACACAGGTTCGAAACTGACATTTTTAACcggcctttttttcttttcccttttctGGCACTATGGgtctttttatgttgtttttcacCAGCATATCTTCCTATTTGTACAATTATGAAAAgataataaatgtatgtatgtatatgtatacacatatatCCCCCATCTGCAGTATCAGTAAGATTGGGTTGGCAATTGCCTGACTGGGAAAGAAGTGCGACCCTCCTTTAACATCACTATtaaaagagggggaaaatgaATCACCAAGAGTTGTTTCCATCACTCTGTTGCCAGAGCTTGTATGGTTTTGTGCAATGGTCCTTAAACCATTTCCCCCTATAAAGGTTTCATTACCCCCCCCAAACCTCAACCTCCCCCCAAACCTCAACCTCCCCTGCCAGTGCCTTGACTGGTAATGAGGAGAGAAAATGGGCTATTATCAGGGTACCGGTGTGGCCGCATCCCTCTCACTTCCTGAAGCCCAACAATGGTAGAGCTTCTATTTGTCTAGAGAGGAGTGCCTGCTGTGAGATGAGTGTTAACCTCCCTTGGGTTCTCAGGCCCCCCACCACTCCGCCCCATTTAATGGCAGTGCCCATTAACCCTGACATTTATTTCTGCCAAACGCATTTAAAACTTATTTCAAAGAGGAGAAAATGGCATATTGTGAACTGAAAGTTGAAGATCACAGCACACCAGAAGACCAACGTATTTTAAGCAAATGATCATTGAGATAAAATGGCTGGGAAAAGGGTGTGCCTTCTGTTATAGAGGGAACAGTTACAGCAAGTTTCCAGAGGAAGTGCACATGGCCAGGGGTCAATCAGAGAAGAGCATGATTAGGGAAAGCCCTGACCGCTCCTGCTCTCTCCAGGGAGGCGCAGAGCAATCAGTCTGTAGGCTGTTATTCAGCTTGACAGTCAATCTAACTTATGTAATCAAGATCCCACACCACGCTAACGAAGTGGCCGTGATCAGACACTGACCGCTGCTGGCAATCTCTGCTCACAACAGCTGATCCAGGACCAGTTTAATCATCCTATTAAAttatataaagaaaacaaaaagctgTTGAAAACAAGCATCCAGGGAAGGAAGAATGTAAGTAATTAAGCTGTGTCTCAAGCTGTGCAGAACCGCTTGAGACACCCCCAGTTAAAGCAGTACCTCAGCAAAAAGGAGGTCAATCTGGGAGCAGTAGAATGGGTTCTGGTGTCAGGTTCTGCTTGGGCTGTTTTTCCAGGCCTGTAGCTGGGCTCCGTGGGCTTTCTGTTCGCATGGGAGAGTGAAGCTTTGTGAACCCCATACTctaccctgtggatggagctATCATGTGCTGACTcaaatgaaccaatcaaaagatcaCTCTCTGTAGCAAAAACACTGTGATTAGTTGAAATTAGTGTCACAGACCACATAACCACTCCACCATTTGAGGCTGCTGAAACCTCACTTTCACCATGACTACTTTTGGTGTCTTCCCCGAGTGATTGAGGGGTGACCCACATGCCTTCAGTTTCCCTGTGGGGCAGAGTGCAGTAAACCCCAACACAGTGTCCGTGCGCTCAACATCCACAACCATGAATGCATTGAAGCTGTGTTGAATGACACCCATTAAAGTgttttggtcaggattaatatAACTGACAGCCAGGATAAGCTGCCATCATCAACATCAAGTACATATGTGCACTCCTCTTTAAGAACAAGGCTTTGGTTTAGAGAAAAGATCATTTTCAGGGAGTATCTTTGTTGCCCAGAAAAGAAAATTGGATGCAAAAGATAAAAGCTTAAAACCGCTTTGGTGACATTAATGCTGAGTGGAAATGCCCTGGCTGTTCAGCCTGTTGGAACCACTCATCTCCAGGGCTGCAGAAAAGAAAGGTTTATGCATAATGATCAGCCCACTGCTGGCCTCCCTCACTGAGCTGCTCTTGTTTCCCAAACATATTACCATTCAAATCCCCAGCTATGTATTCAGAAAAGGTAGGATTTAACATTTATATTAGTGCGTGGGGACTTTTTGGACAGTTAATCAAACAAGCGTTCCAGTAgtttgtatatacatatattttacaggtAAGCACATGCATTGTGCGTGTTTTCTTTAACTTTCTTCCCGCCATTCCAAACATATGGTAAATAAGGTCTCTTCATCCTAATCACAATGCACTTTGTTAActtatttgaaacatttttcatgtttcagTGACTACCAAACtcacaattttgaaaaaaagtaacacttgttAAAATTCTCAAGAGATTGAATCGAGGCCTAattgtttttccttttgtgGTGACATTACACTAATGAAGATTTACAGATCTGTTTATCATCTATCAGAATGTGTGGAATTATGGGTTATAGAGTATGGGAGGTATTCTGAACAGTCCAATGCTCTGTCTTGTTTCTCTGAAAACCTTGAGTTTTTCAGATTGTCTTCGGTCTCTCCTCTGTGATACTCAGTCACTCTTTAGACATGTGCATGCTCTGTGCAATGTATGCGGCTTGGTCCAAACCAGAACAGATATACTATTCACCAGGAAGCGCATTGAGGACTGCCTTTGTGGATTTTTGCGTGATAGAGACACACGTGAGAACAAATTCACGTTTACTCCTCAGATGTTCTCGAATGTTTAGAATTTCTCTaaacaaagccattgagacCCCTCTATTGACACTTCAAAGCATTCCAGTTTCTTTTGATTCTGTTGTCTACTAGTATCAACTCTGGCTGTGTCCACTCAGTAGTATAGGCAGATGCTGCACTTGTGCAGTTATGAACACGTATAGAATGATGTACGTGTATAGTAATAATGACAGATGTCTATGCGTGAACCAAAATTCACATTAACACCAGTAAGGGCCTGTATAAGACAGGTACATAAAAAGCAAATAACTGGACAATGCAATGCCCCAAACCAGTACTCCAAAAGACCACTAGGGGGAGTCAGAAGGGTAGGGTGGCATTTTGGGTTTGTATCCATTTGATTTAGTATATTTGATTTCTATGACTGCAGACATGGATTATGGCATCTGGTTACAGGCTACAGTTAAGAGTACTGCCTCTAAGAGCAGAGTGCTATGGCTACCAAAGtgggtattttattttcaggagacaagggtaaaaaaaaaaaaaaaaaaaaaaaatgtgtggtgTCATCTTTATCTTTTAAAAAGGGAATTGTCAGACCAGTAAAAGAACAAAGAACCATTTTACAGAATGACATGCATGATTTTGTTTTAGCCCCTCAAAATGAACTTCCTGAAAAAGTATTTGGCTTGTTGCCCAAGATGCTATGTCCATTCATCAACATCAGGCACATGCTTAAAGCACACAAAGATTGCAACAATAAACAATGGAAACCAATAGACATCCTAAAGGACAAAACTGGACACTATTCTTACAATGCCAAGGAATTCTGGGAAATGTATGGACTACAGAATGGACCACTATTGAGGAGGCTTTGTGACAAGCACACAGTATCACTACACAAGACCTACACAATGTTGCATTCAAGTGTCATGAAACATGTCACATGTCATGCCATGTAAGAGGCTGGTGAAGCAAGCCATCCTGGGTCACATTAAGCAGCGGTGCATGTATTACAGTTGACTGTGTTGTTTGTGAGAATCCCTTTGTCTGATGCACCAAATCTAtacttgtttgtgttgttttatatcTGTCGATCTGTCACTGTCTGCATGGATGAAACAATCTCTGCAATGCCACGCTCCCCACTGCCATTCTACTCCCGTGGGAAGAACTGCTCAGTGTCATGTGTTCATTTCCTTTTGTTCCCTTCTGAAACGATTTTACGAACTCACATAATCCAAGATTTATATGGAAGCCGACTAACAATGCTTTGTAAAACAGGAACAGTGTTGTTTGACTTACGTGACTTACGTGAACATGACCGCTGTTAATAAACTATTTTTGAAACAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0032154	Cellular Component	cleavage furrow	Interproscan
GO:0043149	Biological Process	stress fiber assembly	Interproscan
GO:0043197	Cellular Component	dendritic spine	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-