Detailed information of KAJ8399429.1 in Aldrovandia affinis Gene info
Gene IDAnnotationScaffoldStartEndStrand
KAJ8399429.1E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBERAAFF_1.1_unplaced_8316485331695962+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF21324SHPRH_helical-2ndE3 ubiquitin-protein ligase SHPRH, second helical domainDomainInterproscan
PF21325SHPRH_helical-1stE3 ubiquitin-protein ligase SHPRH, first helical domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000330DomainSNF2, N-terminalInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR048686DomainE3 ubiquitin-protein ligase SHPRH, first helical domainInterproscan
IPR048695DomainE3 ubiquitin-protein ligase SHPRH, second helical domainInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR052583FamilyATP-dependent Helicase/E3 Ubiquitin LigaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45865E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0006974Biological ProcessDNA damage responseInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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