Gene detail

Detailed information of KAJ8398587.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8398587.1	NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN	AAFF_1.1_unplaced_89	1483244	1534338	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00421150

ATGGATCCTTGTGCCTGCACTAAGAcTGGGTCTTGCAGCTGCGGAGATGCCTGCAAGTGCACGGATTGCAAATGCACTACGTGTAAGAAAAGCTGCTGTTCTTGCTGCCCTGCCAGCTGCAGCAAGTGCGCCTCCGGTTGCATCAGACGACTGAGCCAGGTGCACGCTATGGATGCGGAGGGTTTCGGGGAGCTGCTTCAGCAGGCAGAGCAACTCGCTGCAGAGACTGAGGCGATCTCCGAGCTGCCTCATGTGGAGAGGAACCTACAGGAGATCCAGCAAGCTGGCGAGAGGCTTCGCTCGCGCACGCTGACTCGCACGTCGCAGGATACAGCCGACGTCAAAGCGTCCATCCTGTTGGGTTCGAGAGGCCTGGACATCTTCCACATCTCCCAGCGTCTGGAGAGCTTGAGCGCGGCCACCACCTTCGAGCCACTGGAGCCAGTCAAGGACACGGACATTCAGGGCTTTCTGAAGAACGAGAGGGACAATGCGCTGCTGTCAACCATCGAGGAATCCCGACGCAGAacgTTCCTGCTGGCGGAGGAGTACCACAGGGAGTCGATGCTGGTGCAGTGggagcagctgaagcagagggTGCTGCACACGCTGCTGGGGGCGGGCGAGGACGCGCTCGACTTCACCCAGGACGTGGAGCCCAGCTTTGTGAGCGACGTCGGAGCGCCCGGACGCAGTGCACTGGACAGCGTCGAGGTGGCCTACGGACGGCAGATCTACATTTTCAATGAGAAGATCGTGAACGGACACATGCAGCCCAACCTGGGAGACCTGTGTGCCTCTGTAGCCGAAGGCCTGGATGACAAGAACGTGTCAGAGATGTGGCTGATGGTGAGGCAGATGAGCGATGTGCTGCTGGTCCCGGCCAAGGACTCCCTGAAGAGCCGCGTGGCCGTCGACATGCAGATGGCCTTCGTCCGGCAGGCCCTGCAGTTCCTGGAgaacagCTATAAGAACTACACCATGGTGACCGTGTGTGGGAATCTGCACCAGGCCCAGCTGGGCGGAGTCCCGGGGACCTACCAGCTGGTGCACAGCTTCCTCAACATTAAACTGCCAGGACCTCTGCCGGGCATGCAGgatggagaggtggagggcCACCCGGTCTGGGCTCTGATCTATTACTGCCTGCGCTGTGGAGATCTGTTGGCAGCGATGCAGGTGGTAAACCGGGCCCAGCATCAGCTCGGGGAGTTCAAGAACTGGTTCCAGGAGTACATGAACAGCCCTGACAGACGtttgGCGCCCGCCACCGAGAACAAGCTCCGCCTGCATTACCGCCGCGTGCTGCGCAACAGCGCCGACCCCTACAAGCGCGCCGTCTACTGCCTCATCGGGAAGTGCGACATCGCCGACAACCACGGCGAGGTCGCCGACAAGACCGAGGACTACCTGTGGCTCAAGctgaaccaggtgtgcttCGAGGACGACGGCAGCAGCGCGCCCCAGGACAGACTGACCCTGGCGCAGCTACAGAAGCAGCTGCTGGAGGACTACGGAGAGTCGCACTTCTCGGCCAGCCAGCAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTGACGGCGCAGTTCGAGGCGGCCGTGGCCTTCCTGTTCCGGGTGGAGCGTCTGCGCAGCCACGCCGTGCACGTGGCCCTGGTGCTGTACGAGCTGCGCCTGCTGCTCAAGTCATCGGGCCAGAGCGCccagctgtTGAGTCAGGAAGCGGGGGACACCCCCATGGTGCGGCGCCTCAACTTCATCCGGCTCCTCATGCTGTACACCCGCAAGTTTGAGTCCACCGACCCCCGCGAGGCGCTCCAGTACTTCTACTTCCTGCGGAATGAGAAGGATAGCCAGGGAGAGAACATGTTCATGCGCTGTGTCAGTGAACTGGTCATCGAGAGTCGAGAGTTTGAAATGCTCCTGGGCAGACTGGAAAAAGATGGAAGCAGAAAGCCCGGAGCCATTGACAAGTTTGCGGGTGACACGGGATCGATCATCAGTAAAGTGGCCCTGGAGGCGGAGAACAAGGGCCTGTTTGAGGAAGCGGTCAAGCTGTACGAACTGGCCAAGAACCCGGACAAGGTTCTGGAGCTCATGAACAGGCTGTTGAGTCCGGTCGTTACTCAAATCAGCGCCGCCCAGTCCAACAAGGAGCGGCTGAAGAACATGGGGCTGGCCATCGCTGAACGGTACCGGACGCACGGTGTCGCGGGGGAGAAGTCGGTGGACAGCACCTTCTACCTGCTGCTGGATCTCATGACATTCTTTGACGAGTATCACGCGGGCCACATCGACCGGGCGTACGACGTGATGGAGAGGCTGAAGCTGGTTCCTCTCAGTCAGGACGGCGTAGAGGAGAGGGTGGCGGCGTTCCGTAACTTCAGCGACGAGGTCCGGCATAACCTGTCCGAGGTCCTCCTGGCCACCATGAACATCCTGTTCACGCAGTACAAACGCCTGAAGGGGGCGACGGCGGGCACCCCGGGCAGGCCCCAGCGCTCCATGGAGGACCAGGATACGCAGCTGCGCAGTCAGGCCCGGGCGCTCATCACCTTCGCCGGGATGATCCCGTTCCGCATGGCGGGAGACACCAACGCCAGGCTGGTGCAGATGGAAGTGCTGATGAACTGA

Transcript

AAFF_T00421150

GTCACGAGAAGCACACGTAGCCAGTAATAACAACCTTGGTTGATGGAAAATTACTCCGGACATCACACGGTCACTATCGCCGGGCGCAAAGTGCTTTCACTCGCATGTTTGAGCTCCAGCTCGTACCGGGTGCATAAACTTGGACGTGTGCTGCGCGCCTTCTGCTGGTCATCCTGTGCCAAGAGCAAAACAATGAATATTTACACACGTCAACAATGCTGAGCACGCCGTGTGCAGTTTCTCAGTTGAGTGCCAGATTTTTTGTTGAAATTAAGTTCGCTTGGCTGACAATACATATATATCCAGGAGCCATCAATATGGAAATTGTGTGCGGTTCGGTTATGGTTTATTTGTTGAATAGCACTGTTTTAAGATTTTCACccagtactttttaaattagcACATTTACACTGTTTTTCTTAATTTACTTATAGATACGTTTACAAAAAAACTCGGAAAACTAGTTATTGCTTGATTCACAagctataatatatttttgaaacatCTGCCAATGAATCCCTtagtgtacacaaacacacatttaaccGTTAAATCGATTCCTAATAATATAAATACCATCATAGTCtgtttaaaacaacaacaaaaacaacacgtAATTAATCCATTCACAATTTGTCCCGGGCTTCAATCAATTACGCTATGATGTCCGTGAataggtttttttgtgtttgcccCCATAGGGCGGTGCGAAATAAAGGTTGACATGGAAATGCGGTTGTGTAATTCGATCAACAACAACACTCCTCTCTCAAACGGCTGAGACCCGTCTGTATTGTGGGAAATGGTTTGCACACTGTTGTTGCTGGCGTAATTTTGAGAAGGCCGTGTGCAGGCTTGCTTGCTTCCTctttgtgagtgagtggggaGTGTCGCTTTTGCACTCGGTCTGTCTGAGTTAGAAATGCTATAAAATCGACGTTCCGGCTAGCGGTTGGTATTCACGCTCACAACATTTCAATTGAGATTCGTCAAGAAAAAGAATTGAAGAGGAAAATATGGATCCTTGTGCCTGCACTAAGAcTGGGTCTTGCAGCTGCGGAGATGCCTGCAAGTGCACGGATTGCAAATGCACTACGTGTAAGAAAAGCTGCTGTTCTTGCTGCCCTGCCAGCTGCAGCAAGTGCGCCTCCGGTTGCATCAGACGACTGAGCCAGGTGCACGCTATGGATGCGGAGGGTTTCGGGGAGCTGCTTCAGCAGGCAGAGCAACTCGCTGCAGAGACTGAGGCGATCTCCGAGCTGCCTCATGTGGAGAGGAACCTACAGGAGATCCAGCAAGCTGGCGAGAGGCTTCGCTCGCGCACGCTGACTCGCACGTCGCAGGATACAGCCGACGTCAAAGCGTCCATCCTGTTGGGTTCGAGAGGCCTGGACATCTTCCACATCTCCCAGCGTCTGGAGAGCTTGAGCGCGGCCACCACCTTCGAGCCACTGGAGCCAGTCAAGGACACGGACATTCAGGGCTTTCTGAAGAACGAGAGGGACAATGCGCTGCTGTCAACCATCGAGGAATCCCGACGCAGAacgTTCCTGCTGGCGGAGGAGTACCACAGGGAGTCGATGCTGGTGCAGTGggagcagctgaagcagagggTGCTGCACACGCTGCTGGGGGCGGGCGAGGACGCGCTCGACTTCACCCAGGACGTGGAGCCCAGCTTTGTGAGCGACGTCGGAGCGCCCGGACGCAGTGCACTGGACAGCGTCGAGGTGGCCTACGGACGGCAGATCTACATTTTCAATGAGAAGATCGTGAACGGACACATGCAGCCCAACCTGGGAGACCTGTGTGCCTCTGTAGCCGAAGGCCTGGATGACAAGAACGTGTCAGAGATGTGGCTGATGGTGAGGCAGATGAGCGATGTGCTGCTGGTCCCGGCCAAGGACTCCCTGAAGAGCCGCGTGGCCGTCGACATGCAGATGGCCTTCGTCCGGCAGGCCCTGCAGTTCCTGGAgaacagCTATAAGAACTACACCATGGTGACCGTGTGTGGGAATCTGCACCAGGCCCAGCTGGGCGGAGTCCCGGGGACCTACCAGCTGGTGCACAGCTTCCTCAACATTAAACTGCCAGGACCTCTGCCGGGCATGCAGgatggagaggtggagggcCACCCGGTCTGGGCTCTGATCTATTACTGCCTGCGCTGTGGAGATCTGTTGGCAGCGATGCAGGTGGTAAACCGGGCCCAGCATCAGCTCGGGGAGTTCAAGAACTGGTTCCAGGAGTACATGAACAGCCCTGACAGACGtttgGCGCCCGCCACCGAGAACAAGCTCCGCCTGCATTACCGCCGCGTGCTGCGCAACAGCGCCGACCCCTACAAGCGCGCCGTCTACTGCCTCATCGGGAAGTGCGACATCGCCGACAACCACGGCGAGGTCGCCGACAAGACCGAGGACTACCTGTGGCTCAAGctgaaccaggtgtgcttCGAGGACGACGGCAGCAGCGCGCCCCAGGACAGACTGACCCTGGCGCAGCTACAGAAGCAGCTGCTGGAGGACTACGGAGAGTCGCACTTCTCGGCCAGCCAGCAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTGACGGCGCAGTTCGAGGCGGCCGTGGCCTTCCTGTTCCGGGTGGAGCGTCTGCGCAGCCACGCCGTGCACGTGGCCCTGGTGCTGTACGAGCTGCGCCTGCTGCTCAAGTCATCGGGCCAGAGCGCccagctgtTGAGTCAGGAAGCGGGGGACACCCCCATGGTGCGGCGCCTCAACTTCATCCGGCTCCTCATGCTGTACACCCGCAAGTTTGAGTCCACCGACCCCCGCGAGGCGCTCCAGTACTTCTACTTCCTGCGGAATGAGAAGGATAGCCAGGGAGAGAACATGTTCATGCGCTGTGTCAGTGAACTGGTCATCGAGAGTCGAGAGTTTGAAATGCTCCTGGGCAGACTGGAAAAAGATGGAAGCAGAAAGCCCGGAGCCATTGACAAGTTTGCGGGTGACACGGGATCGATCATCAGTAAAGTGGCCCTGGAGGCGGAGAACAAGGGCCTGTTTGAGGAAGCGGTCAAGCTGTACGAACTGGCCAAGAACCCGGACAAGGTTCTGGAGCTCATGAACAGGCTGTTGAGTCCGGTCGTTACTCAAATCAGCGCCGCCCAGTCCAACAAGGAGCGGCTGAAGAACATGGGGCTGGCCATCGCTGAACGGTACCGGACGCACGGTGTCGCGGGGGAGAAGTCGGTGGACAGCACCTTCTACCTGCTGCTGGATCTCATGACATTCTTTGACGAGTATCACGCGGGCCACATCGACCGGGCGTACGACGTGATGGAGAGGCTGAAGCTGGTTCCTCTCAGTCAGGACGGCGTAGAGGAGAGGGTGGCGGCGTTCCGTAACTTCAGCGACGAGGTCCGGCATAACCTGTCCGAGGTCCTCCTGGCCACCATGAACATCCTGTTCACGCAGTACAAACGCCTGAAGGGGGCGACGGCGGGCACCCCGGGCAGGCCCCAGCGCTCCATGGAGGACCAGGATACGCAGCTGCGCAGTCAGGCCCGGGCGCTCATCACCTTCGCCGGGATGATCCCGTTCCGCATGGCGGGAGACACCAACGCCAGGCTGGTGCAGATGGAAGTGCTGATGAACTGACCCGTCTACtgcgccccccccgccccccacccccaccctccctc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00131	Metallothio	Metallothionein	Domain	Interproscan
PF04097	Nic96	Nup93/Nic96	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000006	Family	Metallothionein, vertebrate	Interproscan
IPR007231	Family	Nucleoporin interacting component Nup93/Nic96	Interproscan
IPR017854	Homologous_superfamily	Metallothionein domain superfamily	Interproscan
IPR018064	Binding_site	Metallothionein, vertebrate, metal binding site	Interproscan
IPR023587	Homologous_superfamily	Metallothionein domain superfamily, vertebrate	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11225	NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-