Gene detail

Detailed information of KAJ8398199.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8398199.1	RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2	AAFF_1.1_unplaced_92	2683434	2688008	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00430430

ATTCTTTCGTTTTCCTTGCTTGAATACAAAAACGTAATGGTTATCTTTTAACCACGCCTCTAATAATACAAGTGAAGtcaatataaaaaggggtcatACAAACATATGTTAACTCTCGTTTGTAGGCAACAGTTGCATTGGAAGACCAATTTGAGTGCGAACCATGTTGCTTTCAACCCAAATCGTTTTTGGCAAAATGCTGCTGCAGGTGTGCATCACCAACCTCCATAGCATCTTCGTGAGCATCTTAGACTGGATAGGAATAAGCACTGGACGGGGTCGTGCTGTGCGCGTTGCCCACAAGGCAGCTGTACGGGAGGTACACAGAAAAACGGACAAGAGCGAGGCGGTCACCCCAAAAATTCCCACTCCTACCAGCGTCAACTATCATTTTACGCGACAGTGCAACTACAAGTGCGGGTTCTGCTTTCACACAGCGAAAACATCATTTGTGTTGCCGATTGAAGACGCCAAAAGGGGTTTGCGCTTGCTGAAGGAATCGGGAATGGAAAAAATCAACTTTTCTGGCGGAGAGCCGTTTTTGCAAGAAAAAGGTGATTTCTTGGGAAAACTTGTGCAGTTCTGCAAACAAGATCTTCAGCTCCCAAGTGTTAGTATAGTAAGCAACGGGAGCCTGATTCGAGAAATCTGGTTTCAGAAATACGGGGACTACTTGGACATTCTTGCAATTTCCTGTGACAGTTTCGATGAGGACACCAACAAGTTGATCGGTCGGACCCAGGGTAGAAAAAGCCACCTCGACAACCTGTACAGGGTGCAGAGCTGGTGCAAGGACTACAAGGTGGCCTTCAAGATCAACTCTGTGATAAATACCTTCAACGTGGAAGAGGATATGCGGGAGTACATCGCTGAGCTTTCTCCAGTGCGCTGGAAGGTGTTCCAGTGTCTGGTTATTGAGGGAGAGAATGCCGGGGAGAATGCTCTCCGGGAGGCAGAGAGGTTTGTGATCAGCGACCAGCAGTTCCAGGACTTCCTGGACCGCCACAGTGATGTCACATGCCTGGTCCCAGAGTCCAATCAGAagATGAGAGATTCCTATCTTATCCTTGACGAATACATGCGTTTTCTTGATTGCCGAGAGGGCAGGAAGGACCCCTCAAAGTCCATCCTGGATGTGGGGGTGGAGAACGCAATTCAGTTCAGCGGCTTTGATGAGAAGATGTTCctgaagagaggaggaaagtaCATGTGGAGCAAGGCCGACATGAGGCTAGAGTGGTGACCTTCGAGCACAGGCGCTCCGTGATGTTTCCTTGGAAACCAACTTcatatatatgacatttagcagacgcttttatccaaagcgacttacagtagtgacttTTGACCAAGTGACGTCATGTCTGTACTTTGCCACTTTTTGCCATTTAAGAAcaagttgtttgtgtgtgtatgtgtgtgttctcgtCATATGTGAGTATGCTTTACATAAACTGCATCTTCATAAAACATTACATAATAATGGCAAAACAGCTCAATTAAGTATTCAAATGCATGTTTGACAGCTCTGTACATTGTGTAAATACCAATCATTATTTATGATATGCTGTGTGTACACATTAACGAATGCTTAATATAGCTATTATGTCTATCTTATATATTTCTTATTGATGTGTTATATATGAAACTGAAGATTTAGTTACTGAAGGCGTAATTCTGAAGAAGAAAGGTGATGCTATTTCCACAAGCTTTTTTACTGGAAAGTTATGTATTGCATGtagcaaaaagtatatattttttaataatgaaaaaaaccaTGACAATATAATTAATGTGCAATTTAATTATAATAgattcaaaaaaatgtttactaaGTATGGGCACATAGGGATtggtatattatatttaatttgtattcattgtatttcatttgtaacaaaatatattgttattgtCTTAGTGTTATGCATGCAGGATTTTTTTAGATCCACCTGCATCCACTTTCAAAGAACGTAAAGTATGCTGTCTACAGTTTGacacatgtttgtttttatacttGAGTCACTGCATATCTGTGCATCTGATGAGTTGATTAATTTGTAATATGTAATTTTGTTGCAATATCCCTAGGTCATCTAAGTCAGATTTTTGTATGTGCCTGAAAGCCTGTCTACTCACCATATTAGCATGGAGGGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF13353	Fer4_12	4Fe-4S single cluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR026372	Family	S-adenosylmethionine-dependent nucleotide dehydratase RSAD2	Interproscan
IPR051196	Family	RSAD2 and Viperin antiviral	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21339	RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005811	Cellular Component	lipid droplet	Interproscan
GO:0050778	Biological Process	positive regulation of immune response	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0051607	Biological Process	defense response to virus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-