Gene detail

Detailed information of KAJ8398160.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8398160.1	STAC	AAFF_1.1_unplaced_92	1086028	1134814	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00430040

CATCACaggcgcacacacccacacgcacattAACAAAGTGACAGTCGCTGCCGTCTGACCGCTCAAATTCTTGCCTATTCTCTGCCACTACAGCTCATATCTCACTGTGCGCAACGAACCGACTGGCTTTTGTATGTAGGAAAGTACAGAGAAGTATAATATTTCTAGCGAAGACACTCGCTCCATCTTAACAATTTCAAGATTTGCGTTTCTTCGCGGTCTGTGATGTATATTCCGGAGGTAGGTACATGTTCATCGTTCTCGCTATCCTTGGAAAACTTAACTTTCTGAGATTATTTCTGAGATTATTTCTCGGTACCATTTCCCGTCCAACCGCTGCAACCGCCAACAGGCGTCTAAAGAAACAAGGGGCAACACCATAGCCAGGGACCCGTCCAATGAGTGGGATGCTCTTCGTCGCCGGACTTGGTAAATAGGCTACCGACGTGTTtttacacacacagcatgtaAGAGAACGTAGACACCTGAAGAGGACGGGAGGTACAGGAGAGAAGAGGCGAAACGTCCGGCGCcgctgccaaaaaaaaaacaaaaaaaaaaaacaaaacgaataaCAGATGAAATATGATTCCACCTGCAAACGTGACCCCGGACGACAACATGGGCAAAGAGAATGAACGGGAGCAGCACGAGCTGCCTCAGTCACCGTCGTCTAGCATCAGCCAGCAAGAATCAAAGCTGCAGAAGTTGAGGCGCTCACTGTCCTTTAAGACGAAGAGCCTGCGCAGCAAGAGTGCGGACAACTTCTTCCAGCGCACCAACAGCGATGCCAAGCTGCAGGTGGACCTGCTCCCTGAGGTCAGCACCAGCACGGGTCACCTGATCGGCTGTGACCCCCTCGCCGTTTCCGCCCCACTGTCCACCCCTGCACCCTCCGTCCGCTCGCCCACCAGGACCCCACTCCCGCCCGACCCCACTGCACACAGCTTCCTGGAGCACATCTTCAAGAAGCCCACCTTCTGTGACATCTGCAACCACATGATCGTGGGCACCACCGCCAAACACGGCCTCAGATGCAAAGCCTGCAAGATGAGCATCCACCATAAATGTGCTGATGGTGTGGGCCAGCAACGCTGCATGGGGAAACTGcCAAAGGGCTTTCGACGGTATTACAGCTCCCCTCTCCTGATCCAGGAGCAGTTTGGCTTCATTAAAGAGGTCATGCCCATCGCCTGTGGGAGTAAAGTAGACCCTGTGTACGAGGCCTTGAGGTTTGGGACGTCCCTGGCCCAGAAAACCAAGAGGGCCAGCACGGGCAGTGGCTCAGAATCTCCCCACCGGAACTCAACCAGCGACTTGGCAGGAGTTCCAGAGGAGGGCGTGGCCTACAGCAGCCGGGCACAACTCACCAGGAAACACAGTGACAACGTCTTCATGCCTCTGGAAAACGGGACTGAACATTTTCACCCGGGAGAGCGGAAATCTGAAGACTCTCCGGTGAGGAGACACCTGAGGAAGGAGCTGCTGCAGATGAACACCTACGTGGCTCTGTACAGCTTCATCCCCCAGGACAGCCAGGACCTGGAGATAAGACCCGGAGACAGGATCGTGCTGGCGGACGACTCCAATGAAGACTGGTGGAAGGGCGTGATCGAGGACAGGATTGGGTTCTTCCCCGCCACCTTCGCCCACCAGGTGTGTCCCGGGGACCAAGTGTTCAGGTGTCACCGCACCTTCATCGGCTGCAAGGAGCAGGGCCAGATCACCCTGAAGGAGGGACAGATCTGTGTGAGTGGTGAGGATGAGCACAGCGGCTTTATCAGGGTGGCGAGTGGGAAGAAGAGGGGCTTTGTTCCCTGTGACGTCCTGGAGAACATCTAACAACACAAGGACATGAACAAGCCCTCCTGCCCATCCAGGCTCCCCATTCACCCacagtatccagcactgcatcaatcctggactgagagagagagagggagagaaactgTAGTGGCTCTCTTCCAagatccccccccctctccaacCCATCCATCGTACGCTTCAAACAGCGCAGTTTCAAAGGCTGCCAGAGGTAGCGCTGTAACCAGACTGGTAAACGCGCTCGAGACAGTGGGGGGTCCTAACATCAACTGTGGCTGAACTCGCGTGCGATGGCCACAAAAGGGGCTTTTTTCAAAATTAGGACCAACTTCCTTGAGAAGTTAGGACGCGGGGCGTCTAGTGGGTAAAAAGTCAAGTAAGACCTGTTTTATAGACATATAcgctatatctatatatatatatatttatgtatatttagttttttaattatttatttaaggtGAGTGCTGTATGCTGCTGGTTCCTGCTAAAAACCAAGAGCAGGGAGTGAAAGAACCTTCCGGAATCAACTACACAGGCTGAGTAATCTTACTGGCTCACGGGGATTAAAACGaccaaaagagaaaaagaacaaaaagcaatgTTTGTTTACTCAATTTTTCAGCAAGTTTCTAAATTTAAAAAGGTCAGGCTTTACTTTATGTAGTCACGGTTCAGTGCATACTCCTCTCGAGGTTACcaccaaacattcaaaaagcGTTCATCCCCGTCCTTTATATCAATAAAGTAGCTCTTACTGTGAAAGGTGATCACTTCTTTTATTTAGAGCAGTAGTTCTTGACAATGCAGGTGACTATTACAGGTAAGAGTCACCGAGAACACAACAGGAAGAGGCGACAGGCACCCTCGCTCACGCTGAAGTCGTATTTTACAGCGTTCACAGGCTCGTTCCCTATTTCAGATTAACACTAATGTTCATATTATTTAAGTCGCTTGGAGATGAAGAAAAAGAAACGAGAATGTGGCAGAAATGTGTCAGGCGTCAGTGCGGAAcagaaaatggcaaaataataataataatctaatcAAAACATTTGAGGGGTTCCTTTATTCTTCgaagaaaacaaaacctttgtgcgcaaaaaatatataaatcttgTGACGATCGAAATCCCTCTGCAAGAACTTCAATTCCCAACccgctttttaaaaatatctgttTGTTGTTTCATATTCGaaataaaagaacaacaacaactatgccaaaaaaaatgaaagcatgATTCCACAGTgatgctctgtgctctgtataTTAACAACTGACCAGTGACCACCATTCAACTAAATACACTTTCACTTTCTATCAGAGAATTTACGTAGAATATCAAAGAGAATTTGAAGATATGAGGTCGAACTAGGAATTGACTGGATGCTTTCATTTTGATTAGATCAAATCAATTTTTTGTCATTAAAACCTTGTTTGATGTGTATACTTGCACCACATTACAGTATGCGTTAGCATCCTTTACAGTATTGTTTAAATGACCAAAATGGCCAGGGGATGCAAGGGACCCCATTGTCATTTGTCTCCTGTAAATGTTTGCTTTATCATTTCTAAGCTTTCTGAGTCAAGCTTGGataggtcaaaggtcaagagGTCAAAGACTACTGTATCTCTGCAAGCAAtgataatacaaataaagactGTGTTGATCAATgtg

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00130	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan
PF16664	STAC2_u1	Unstructured on SH3 and cysteine-rich domain-containing protein 2	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR002219	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR035508	Domain	STAC1, SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR039688	Family	STAC1/2/3	Interproscan
IPR046349	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15135	STAC	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003009	Biological Process	skeletal muscle contraction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031234	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:1901387	Biological Process	positive regulation of voltage-gated calcium channel activity	Interproscan
GO:1903078	Biological Process	positive regulation of protein localization to plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-